Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004376.1 Hibiscus syriacus cultivar Beakdansim tig00009585_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90784

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
735--811
31
2.5
31
91
0
118
32
9
10
48
1.69
1769--1848
30
2.6
31
90
5
128
57
7
5
30
1.48
2154--2187
2
18.0
2
88
11
54
50
0
0
50
1.00
5266--5308
20
2.0
22
86
8
63
41
0
4
53
1.21
5592--5630
12
3.5
11
83
13
53
69
0
0
30
0.89
13945--14087
5
28.4
5
79
6
119
41
20
9
27
1.83
13948--14087
25
5.6
25
93
0
208
42
20
9
28
1.82
28537--28579
22
2.0
22
100
0
86
30
27
9
32
1.88
30282--30344
23
2.7
23
95
5
108
36
0
6
57
1.24
31358--31395
2
19.0
2
94
0
67
47
0
2
50
1.15
33925--33968
22
2.0
23
86
4
63
43
13
11
31
1.80
39404--39441
20
1.9
20
88
0
58
21
26
10
42
1.85
43639--43692
25
2.2
25
77
9
58
44
0
3
51
1.19
44651--44722
33
2.2
33
82
9
85
56
1
2
38
1.22
55569--55616
16
2.9
16
81
6
60
39
0
14
45
1.45
67772--67803
15
2.1
15
94
0
55
53
18
21
6
1.67
72163--72237
29
2.5
30
82
4
89
22
10
17
49
1.77
72466--72501
2
18.0
2
94
0
63
52
0
0
47
1.00
73556--73656
30
3.3
29
81
13
116
37
10
9
41
1.74
74779--74803
3
8.3
3
100
0
50
32
32
0
36
1.58
76588--76613
12
2.2
12
100
0
52
15
7
0
76
0.99
81871--81919
22
2.2
22
85
7
64
6
4
28
61
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81885--81929
23
2.0
22
82
4
54
11
0
31
57
1.33
85938--86008
36
2.0
36
83
5
90
45
11
7
36
1.67
86431--86467
17
2.1
18
90
5
58
64
13
8
13
1.48
87433--87492
32
1.9
31
96
3
111
43
11
1
43
1.51
87849--87893
17
2.5
19
75
13
51
48
0
4
46
1.22

Tables:   1

The End!