Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004378.1 Hibiscus syriacus cultivar Beakdansim tig00009599_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60232

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5302--5362
31
1.9
32
86
3
88
29
18
3
49
1.63
5300--5374
31
2.4
30
80
6
87
28
16
2
53
1.56
15087--15124
2
19.0
2
100
0
76
50
0
0
50
1.00
20273--20299
2
13.5
2
100
0
54
48
0
0
51
1.00
30840--30892
24
2.3
22
78
18
54
35
1
0
62
1.06
30992--31070
38
2.1
37
86
6
106
56
6
8
27
1.54
40720--40812
30
3.1
30
93
0
159
32
12
12
41
1.81
50272--50311
16
2.6
16
88
4
55
47
2
0
50
1.14
50863--50915
21
2.5
21
84
0
70
20
22
18
37
1.94
50905--50998
20
4.7
20
85
2
134
38
21
21
19
1.94
50985--51031
20
2.3
20
92
0
76
31
27
19
21
1.97
52873--52961
20
4.5
19
77
18
92
37
24
20
17
1.94
52873--52961
40
2.2
40
88
4
126
37
24
20
17
1.94
52933--53031
33
2.9
34
89
3
155
43
20
23
13
1.86
53044--53138
33
2.8
33
90
3
136
12
22
20
45
1.84
54638--54745
42
2.6
42
75
8
96
22
16
37
24
1.94
55229--55297
20
3.5
20
87
0
102
34
24
18
21
1.96
55342--55409
20
3.3
20
89
2
91
20
17
22
39
1.92
57758--57833
22
3.5
22
75
0
71
21
15
36
26
1.93
58014--58125
20
5.7
20
90
2
181
21
18
20
39
1.93
58115--58167
22
2.5
22
78
6
56
35
18
24
20
1.95
58608--58644
13
2.8
13
100
0
74
48
8
8
35
1.62

Tables:   1

The End!