Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004379.1 Hibiscus syriacus cultivar Beakdansim tig00009605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86831

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2787--2856
20
3.5
20
82
5
88
32
12
25
28
1.93
2841--2971
54
2.4
54
82
6
158
30
17
22
29
1.97
3526--3605
21
3.8
21
71
22
60
23
20
26
30
1.98
3526--3611
44
2.0
44
90
0
136
25
19
25
29
1.99
9565--9604
2
20.0
2
100
0
80
50
0
0
50
1.00
10992--11024
17
1.9
17
88
11
50
72
0
21
6
1.05
12775--12804
2
15.0
2
100
0
60
50
0
0
50
1.00
12929--12953
2
12.5
2
100
0
50
52
0
0
48
1.00
14365--14390
6
4.3
6
100
0
52
84
0
0
15
0.62
14731--15186
123
3.7
123
95
0
804
25
21
16
37
1.93
15186--15439
73
3.5
73
93
2
438
40
13
15
29
1.86
16152--16204
22
2.4
22
96
0
97
33
15
15
35
1.88
19788--19829
8
5.2
8
80
11
50
0
16
0
83
0.65
19788--19823
7
4.9
7
90
10
54
0
13
0
86
0.58
19788--19823
15
2.4
15
95
0
63
0
13
0
86
0.58
19787--19829
16
2.6
17
89
10
72
0
16
0
83
0.64
22395--22463
36
1.9
36
90
0
111
28
13
17
40
1.87
23846--23900
2
27.5
2
100
0
110
49
0
0
50
1.00
24050--24110
2
30.5
2
100
0
122
49
0
0
50
1.00
24810--24869
26
2.3
26
100
0
120
30
23
13
33
1.93
25613--25655
22
2.0
21
86
13
61
74
0
2
23
0.93
25612--25660
25
1.9
26
91
4
82
71
2
2
24
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31634--31663
15
1.9
15
93
6
51
6
30
20
43
1.77
32083--32182
50
2.0
50
86
3
139
28
24
15
33
1.95
42470--42502
15
2.3
15
89
5
50
54
0
3
42
1.15
44067--44135
3
22.7
3
88
2
102
62
0
0
37
0.96
53152--53376
96
2.4
95
82
4
265
27
14
27
30
1.95
53209--53281
19
3.5
21
76
10
62
28
12
27
31
1.93
53322--53376
22
2.7
20
78
10
65
29
12
29
29
1.93
53791--54090
45
6.7
45
89
0
447
41
10
19
29
1.84
53791--54090
135
2.2
135
92
0
510
41
10
19
29
1.84
58544--58619
40
1.9
40
86
0
107
32
15
18
32
1.93
60348--60408
21
2.9
21
80
7
61
26
9
22
40
1.85
69451--69477
13
2.1
13
100
0
54
37
14
25
22
1.93
74276--74359
30
2.8
30
85
0
114
35
30
16
16
1.92
77651--77693
12
3.5
12
78
6
50
39
39
2
18
1.64
77712--77757
21
2.1
22
84
11
60
10
17
0
71
1.13
78349--78403
22
2.4
22
81
6
65
49
10
0
40
1.38
81379--81434
2
28.0
2
88
0
76
50
7
0
42
1.30
82018--82082
31
2.1
31
82
2
76
36
7
21
33
1.82
83760--83815
28
2.0
29
82
3
69
28
14
19
37
1.91
83925--83963
20
2.0
19
95
5
69
28
20
20
30
1.98
83928--84021
41
2.3
41
77
0
98
25
20
21
32
1.97
83927--83980
20
2.7
20
85
8
65
27
18
20
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83945--84044
41
2.4
41
84
0
128
25
23
20
32
1.98

Tables:   1

The End!