genome.fa.s4380.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004380.1 Hibiscus syriacus cultivar Beakdansim tig00009606_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132417

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295--323	14	2.0	15	93	6	51	58	20	13	6	1.58
398--452	16	3.4	16	94	0	101	56	21	12	9	1.64
1524--1609	24	3.6	24	95	0	145	51	24	15	9	1.72
1533--1610	14	6.1	14	75	22	91	50	25	15	8	1.73
2650--2690	16	2.6	16	84	3	57	36	17	7	39	1.77
5031--5942	154	6.0	155	89	4	1397	39	23	17	20	1.92
5491--5936	144	3.0	145	87	6	619	39	22	17	20	1.92
9660--9712	20	2.7	20	93	0	88	30	24	28	16	1.97
9732--9789	20	2.8	20	82	12	64	22	20	32	24	1.98
9869--9929	31	2.0	31	87	3	88	44	9	6	39	1.64
11673--11697	11	2.3	11	100	0	50	44	0	8	48	1.32
11836--11902	20	3.3	20	95	0	116	26	20	4	47	1.69
23300--23335	10	3.7	10	85	7	56	19	0	5	75	1.00
23308--23342	14	2.6	13	86	8	52	17	0	2	80	0.84
24082--24135	15	3.2	18	77	20	62	48	0	0	51	1.00
24073--24135	32	2.0	32	81	6	76	50	0	0	49	1.00
27933--27962	15	1.9	16	93	6	53	60	0	0	40	0.97
27930--27969	20	1.9	22	90	10	66	57	0	0	42	0.98
28348--28384	18	2.1	18	90	5	58	51	0	0	48	1.00
28706--28804	49	2.0	49	92	0	162	31	30	15	23	1.95
31627--31667	19	2.2	18	87	12	57	48	0	0	51	1.00
33004--33045	15	2.8	15	88	0	66	66	2	9	21	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38171--38235	33	2.0	33	87	3	96	47	13	13	24	1.80
44971--45088	35	3.4	35	93	0	209	33	16	23	26	1.96
45022--45088	20	3.6	20	68	25	65	32	17	20	28	1.96
45552--45651	31	3.3	29	70	15	94	38	4	20	38	1.71
45593--45624	15	2.3	15	89	10	50	43	3	18	34	1.66
45539--45681	62	2.4	59	90	5	223	37	4	20	36	1.75
45586--45683	30	3.3	30	72	15	94	38	4	20	36	1.72
45638--45710	30	2.4	30	79	0	74	34	8	20	36	1.83
45786--45908	23	5.3	23	76	6	106	19	24	21	34	1.97
45790--45880	46	2.0	46	86	4	130	18	25	24	31	1.97
47163--47233	36	2.0	36	100	0	142	45	25	16	12	1.83
48450--48515	30	2.3	29	84	5	80	34	3	7	54	1.44
48577--48679	33	3.2	32	78	8	102	50	4	4	39	1.45
48601--48688	31	2.8	31	81	5	97	47	6	4	40	1.50
49157--49210	20	2.7	20	85	0	72	50	16	18	14	1.79
50545--50719	59	2.9	60	75	11	171	34	22	5	37	1.77
50862--51012	60	2.6	57	82	5	160	42	4	21	31	1.73
52250--52361	29	3.7	28	83	9	125	41	13	12	33	1.82
52250--52354	30	3.4	29	83	9	113	40	14	13	32	1.84
53101--53212	60	1.9	59	83	9	147	41	4	15	39	1.67
54072--54154	29	2.8	29	92	1	139	43	9	14	32	1.78
57515--57544	15	2.0	15	93	0	51	23	0	20	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58828--58910	29	2.8	29	92	1	139	43	9	14	32	1.78
62331--62383	9	5.4	9	76	12	52	43	1	3	50	1.30
67137--67166	2	15.0	2	92	0	51	46	0	0	53	1.00
80858--80886	2	14.5	2	100	0	58	48	0	0	51	1.00
100808--100892	30	2.8	30	75	8	82	27	11	8	52	1.66
104396--104426	7	4.4	7	100	0	62	45	12	12	29	1.80
108754--108866	55	2.1	55	91	3	183	32	5	23	38	1.78
110640--110700	21	3.0	21	81	11	83	19	39	27	13	1.89
111529--111650	59	2.1	59	81	6	140	45	4	19	31	1.69
111953--111993	19	2.2	19	86	4	57	7	7	2	82	0.91
112198--112265	2	34.0	2	100	0	136	50	0	0	50	1.00
112848--112921	29	2.6	29	93	0	121	27	16	10	45	1.80
113661--113789	70	1.9	67	83	4	168	29	21	14	34	1.93
115257--115281	2	12.5	2	100	0	50	52	0	0	48	1.00
115553--115642	29	3.3	29	65	29	70	47	4	2	45	1.35
115547--115651	54	1.9	54	90	3	167	49	3	2	43	1.35
115553--115635	24	3.2	24	67	18	58	46	4	2	45	1.37
116402--116440	19	2.1	19	95	0	69	43	20	15	20	1.88
122813--122870	31	1.9	30	86	10	82	34	13	3	48	1.60
123568--123718	37	4.0	37	76	13	135	23	11	25	39	1.88
123580--123700	41	3.0	40	76	15	126	24	11	25	38	1.89
123738--123894	37	4.2	37	84	3	181	24	11	26	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123738--123928	37	5.2	37	81	5	174	24	12	25	38	1.90
124779--124868	25	3.5	25	66	24	69	46	22	8	22	1.79
130675--130707	2	16.5	2	93	0	57	45	3	0	51	1.16

Tables:   1

The End!