genome.fa.s4382.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004382.1 Hibiscus syriacus cultivar Beakdansim tig00009608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71503

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103--175	20	3.7	20	78	10	69	28	26	13	31	1.94
6129--6178	21	2.4	21	86	0	64	42	28	8	22	1.81
6736--6855	54	2.2	54	85	5	154	29	20	19	31	1.96
6868--6922	21	2.6	21	100	0	110	32	23	16	27	1.96
8137--8181	20	2.2	20	84	0	54	44	22	15	17	1.86
9266--9305	21	2.0	20	85	5	53	25	12	20	42	1.86
12971--13408	77	5.8	76	79	9	398	36	9	16	37	1.81
12975--13366	154	2.6	152	83	5	465	36	9	17	35	1.83
12971--13408	228	1.9	228	81	8	534	36	9	16	37	1.81
15280--15462	82	2.2	83	81	6	212	36	9	8	45	1.67
15435--15486	19	2.7	19	93	0	86	28	17	13	40	1.87
15647--16043	101	4.0	101	82	3	419	35	12	16	35	1.87
16346--16478	62	2.1	62	81	9	164	34	6	9	48	1.63
19649--19704	22	2.7	21	74	17	55	32	14	28	25	1.94
19559--19760	94	2.2	93	85	4	264	36	14	23	25	1.93
26202--26346	45	3.5	45	77	19	195	31	12	26	28	1.93
26169--26558	79	4.9	79	82	12	478	34	11	25	27	1.91
26361--26481	45	2.7	45	92	0	197	32	11	28	27	1.92
26282--26515	124	1.9	124	94	0	414	34	11	26	26	1.92
26451--26549	34	2.9	34	92	0	162	37	11	22	29	1.88
26567--26605	20	1.9	21	89	5	62	38	12	25	23	1.90
29253--29438	95	2.0	95	88	2	275	36	14	23	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29860--30181	79	4.1	79	91	2	495	37	11	22	28	1.90
29942--30158	34	5.7	34	72	21	164	35	11	23	28	1.91
29976--30173	45	4.9	43	70	22	162	34	11	25	28	1.91
30579--30620	21	2.0	22	85	4	59	47	4	9	38	1.57
34114--34163	20	2.5	20	100	0	100	36	14	24	26	1.93
34134--34316	95	1.9	95	86	4	262	36	14	24	25	1.93
34115--34329	95	2.3	93	80	8	256	35	13	24	26	1.93
46906--47083	34	4.9	34	79	14	194	36	11	24	28	1.89
51226--51255	14	2.1	14	93	0	51	40	23	16	20	1.91
51646--51760	35	3.4	35	72	13	132	37	0	15	46	1.46
51810--52234	34	10.9	34	72	20	175	36	11	24	27	1.90
51809--52000	78	2.4	79	92	0	314	36	11	25	26	1.90
51922--52189	45	6.5	44	72	21	238	35	11	24	28	1.90
51967--52239	79	3.5	79	93	0	465	36	11	23	28	1.90
51844--52124	124	2.3	124	91	0	438	35	11	24	28	1.90
51809--52203	203	2.0	202	91	0	637	36	11	23	27	1.90
55299--55324	11	2.4	11	100	0	52	57	7	0	34	1.27
56516--56570	25	2.2	25	96	0	101	32	14	18	34	1.91
62324--62428	46	2.3	46	91	3	169	30	22	7	39	1.82
62533--62654	40	3.0	40	93	0	217	35	25	15	23	1.94
67872--68073	26	8.5	26	69	20	156	22	22	9	45	1.81
67943--68191	46	5.6	46	80	10	311	23	22	9	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67943--68147	91	2.2	88	87	4	248	23	21	9	44	1.81
68107--68186	38	2.1	38	97	0	151	23	25	7	43	1.79

Tables:   1

The End!