genome.fa.s4383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004383.1 Hibiscus syriacus cultivar Beakdansim tig00009609_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135631

Tables:   1   

This is table  1  of  1  ( 109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4934--5043	32	3.5	32	77	2	105	36	16	9	38	1.80
4946--5020	31	2.4	32	79	4	98	33	20	9	37	1.84
4974--5079	32	3.3	32	69	3	81	33	16	10	38	1.83
5024--5142	32	3.7	31	76	4	96	36	15	8	39	1.77
7901--7950	20	2.5	20	87	3	75	26	26	20	28	1.99
15371--15411	21	2.0	21	85	0	55	48	12	2	36	1.54
16508--16595	29	3.0	30	77	12	85	35	14	6	43	1.73
16534--16595	29	2.1	30	87	3	90	35	14	6	43	1.71
18026--18078	20	2.6	20	78	3	61	39	22	11	26	1.88
20148--20189	2	21.0	2	100	0	84	50	0	0	50	1.00
20284--20360	40	1.9	40	84	5	102	45	2	9	42	1.49
21979--22017	17	2.2	18	86	4	53	41	2	5	51	1.38
21979--22025	18	2.6	17	83	6	58	40	2	4	53	1.32
26979--27198	5	43.2	5	69	22	54	70	0	6	21	1.15
27106--27283	53	3.4	51	80	11	193	66	1	2	29	1.14
26979--27194	13	16.8	13	65	21	75	70	0	6	21	1.15
28414--28504	39	2.4	36	89	5	128	27	8	23	40	1.84
28490--28723	36	6.6	36	79	12	236	41	13	19	26	1.88
28524--28709	102	1.8	102	85	6	261	41	12	18	27	1.86
28759--28854	37	2.6	36	79	8	104	39	11	18	30	1.86
28759--28971	102	2.1	102	89	1	320	37	12	18	31	1.88
28880--29064	87	2.1	87	91	0	307	37	12	17	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28776--29163	189	2.1	188	84	5	507	38	12	18	30	1.87
29363--29637	106	2.6	106	87	2	383	23	17	23	35	1.95
30214--30301	32	2.8	32	78	3	97	35	21	14	28	1.93
31228--31365	69	2.0	69	86	0	195	28	13	20	37	1.90
31438--31489	21	2.5	21	77	0	59	7	11	5	75	1.19
31451--31477	13	2.1	13	100	0	54	14	7	0	77	0.97
31852--31989	69	2.0	69	87	2	197	26	13	21	38	1.91
35125--35202	9	8.3	9	78	5	66	76	1	5	16	1.02
35129--35226	47	2.1	48	84	5	128	74	1	6	18	1.08
35199--35347	42	3.5	40	77	14	131	63	1	2	32	1.16
36155--36207	21	2.5	21	81	6	72	20	26	18	33	1.96
36197--36244	20	2.3	20	85	3	60	39	16	20	22	1.92
36237--36304	20	3.4	20	89	4	75	33	25	13	27	1.93
36254--36308	20	2.8	20	97	0	101	32	25	14	27	1.95
36518--36570	27	1.9	27	84	3	70	39	32	7	20	1.81
36824--36897	19	4.1	19	72	24	79	47	20	21	10	1.80
36864--36905	19	2.2	19	91	0	66	47	26	16	9	1.77
36907--37005	33	3.0	33	93	1	162	12	24	20	43	1.85
36909--37030	20	6.8	19	71	20	84	12	22	18	45	1.83
39175--39241	21	3.2	21	66	6	55	25	35	19	19	1.95
39123--39241	42	2.8	42	78	12	111	24	36	16	22	1.94
40592--40627	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40734--40780	19	2.5	19	96	0	85	44	21	21	12	1.85
40796--40916	19	7.2	19	65	25	92	15	23	18	42	1.88
40796--40916	33	3.7	32	88	8	181	15	23	18	42	1.88
43209--43245	12	3.1	12	100	0	74	0	27	0	72	0.84
44559--44626	20	3.4	20	68	8	66	41	23	19	16	1.90
44543--44646	40	2.9	34	76	15	109	41	22	21	15	1.90
44653--44720	19	3.8	19	87	12	101	13	22	17	47	1.82
44634--44741	52	2.1	53	82	1	128	20	20	18	40	1.91
46305--46395	42	2.2	42	84	3	123	21	14	40	23	1.90
46770--46834	20	3.3	20	86	2	96	38	21	23	16	1.93
46818--46897	33	2.4	33	93	0	133	48	21	17	12	1.80
46818--46872	19	3.2	19	65	24	57	47	18	18	16	1.83
46904--46997	19	5.5	19	68	23	82	11	20	20	47	1.80
46926--46984	14	3.9	14	74	20	55	10	16	22	50	1.75
46909--46997	33	2.7	33	96	0	160	11	19	20	49	1.78
46985--47039	20	2.8	19	81	8	56	18	23	21	36	1.95
47580--47627	18	2.7	18	90	0	78	16	12	43	27	1.84
48938--48996	20	3.0	20	87	0	73	44	22	18	15	1.87
49259--49302	22	2.0	22	90	0	70	20	15	43	20	1.88
49495--49622	20	6.3	20	82	5	105	23	16	28	31	1.96
49475--49603	41	3.2	41	78	2	143	23	14	26	35	1.93
49617--49684	21	3.3	21	91	2	102	22	22	16	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49674--49726	21	2.5	22	81	6	74	33	18	26	20	1.96
51568--51611	19	2.3	19	88	7	63	45	2	6	45	1.42
51845--51893	3	16.3	3	84	16	66	34	0	2	63	1.06
51845--51893	16	3.1	16	83	16	66	34	0	2	63	1.06
51845--51893	19	2.6	19	84	12	73	34	0	2	63	1.06
53973--54047	36	2.1	36	85	5	98	54	5	2	37	1.37
53984--54412	36	10.8	37	74	18	271	45	5	3	44	1.45
53999--54416	40	10.3	41	72	19	217	45	5	3	45	1.44
54238--54414	77	2.3	75	81	7	196	46	5	3	44	1.43
54395--54431	2	18.0	2	94	5	65	48	2	0	48	1.15
60104--60167	32	2.0	32	93	0	110	25	15	29	29	1.96
60563--60926	134	2.8	131	80	5	344	25	32	16	25	1.96
61092--61173	3	27.0	3	97	2	155	32	0	1	65	1.00
63536--63568	17	1.9	17	88	11	50	63	0	3	33	1.10
63634--63676	16	2.7	16	79	10	52	44	2	0	53	1.13
63641--63676	17	2.2	16	90	5	54	41	2	0	55	1.14
66738--66780	18	2.4	18	92	0	68	32	20	18	27	1.96
67959--68299	57	6.2	55	83	6	288	34	18	12	34	1.88
68719--68767	20	2.5	20	83	6	55	28	24	10	36	1.88
71259--71291	2	17.0	2	93	6	59	48	0	0	51	1.00
74920--75000	15	5.5	15	67	19	55	48	3	1	46	1.27
86791--86849	3	19.7	3	96	0	109	33	1	0	64	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88296--88342	14	3.5	13	80	13	51	40	2	2	55	1.24
88976--89019	17	2.6	17	85	3	54	31	6	0	61	1.22
99681--99722	1	42.0	1	85	0	57	92	0	7	0	0.37
99669--99723	17	3.2	17	89	5	83	87	0	12	0	0.55
99669--99720	8	6.2	8	87	12	70	88	0	11	0	0.52
99681--99722	10	4.5	10	85	14	63	92	0	7	0	0.37
99672--99723	18	2.9	18	94	2	88	88	0	11	0	0.52
100052--100098	16	2.7	18	90	9	71	31	6	8	53	1.57
100867--101777	83	11.0	83	98	0	1736	27	14	22	34	1.93
102569--103147	228	2.6	223	89	4	858	37	13	20	29	1.91
102576--103146	113	5.0	113	86	5	803	37	13	20	28	1.91
103079--103211	65	2.0	65	95	0	239	37	11	18	32	1.87
102966--103310	178	1.9	178	95	0	627	37	11	20	30	1.89
102853--103410	291	1.9	293	90	2	892	37	11	20	30	1.88
103144--103410	115	2.3	115	90	5	409	38	10	19	30	1.86
103662--103700	3	13.0	3	94	0	69	33	2	0	64	1.08
106523--106569	3	15.7	3	100	0	94	34	0	0	65	0.93
108027--108073	14	3.5	13	80	13	51	40	2	2	55	1.24
112421--112469	25	2.0	25	87	0	71	26	20	26	26	1.99
112738--112808	34	2.1	34	86	0	97	32	9	18	39	1.83
126221--126318	34	2.8	34	92	4	151	29	51	18	1	1.53

Tables:   1

The End!