Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004385.1 Hibiscus syriacus cultivar Beakdansim tig00009616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59550

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4548--5123
133
4.3
133
85
4
714
31
22
15
30
1.95
5284--5315
13
2.6
12
95
5
55
25
0
0
75
0.81
5281--5321
19
2.3
17
87
8
55
21
0
0
78
0.76
7393--7889
131
3.8
129
80
4
523
35
11
13
39
1.81
24619--24664
10
4.7
10
82
15
60
0
4
10
84
0.75
24612--24664
19
2.8
19
86
8
65
0
5
13
81
0.86
26629--26702
23
3.3
22
74
14
71
28
24
18
28
1.98
27296--27345
25
2.0
25
100
0
100
12
8
28
52
1.66
29119--29274
65
2.4
64
86
1
213
28
21
19
30
1.98
30858--31204
45
7.7
45
86
2
473
27
24
11
37
1.89
31397--31788
68
5.8
68
90
1
603
30
26
14
29
1.94
32911--33088
46
3.8
46
78
0
167
32
22
16
29
1.96
40443--40476
12
2.8
12
90
4
50
55
17
8
17
1.66
52645--53016
108
3.4
108
83
1
442
30
15
19
34
1.93
52668--52989
162
2.0
161
87
3
459
29
16
20
33
1.95
52668--53012
54
6.4
54
79
3
363
28
16
21
33
1.95
59372--59550
54
3.4
53
81
11
206
30
15
18
35
1.92

Tables:   1

The End!