genome.fa.s4388.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004388.1 Hibiscus syriacus cultivar Beakdansim tig00009620_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75460

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6195--6298	31	3.4	30	85	5	127	32	11	28	26	1.91
7603--7651	24	2.0	24	96	0	89	42	10	12	34	1.76
8194--8257	31	2.1	29	85	5	83	35	17	9	37	1.82
9324--9408	30	3.0	27	75	18	75	32	16	8	42	1.78
15599--15659	33	1.9	30	83	9	77	29	0	6	63	1.19
16010--16053	2	22.5	2	95	4	81	47	0	0	52	1.00
17890--17951	31	2.0	31	81	12	74	16	14	33	35	1.89
17960--18097	46	3.0	46	83	1	152	22	14	21	42	1.89
18403--18433	5	6.2	5	100	0	62	38	0	0	61	0.96
19657--19889	126	1.8	126	85	7	330	24	18	24	32	1.97
21454--21486	2	16.5	2	100	0	66	48	0	0	51	1.00
21505--21541	19	2.0	19	89	5	58	51	5	5	37	1.48
22667--22739	19	3.8	19	94	3	128	42	17	10	28	1.83
24480--24519	21	1.9	22	90	10	66	15	5	37	42	1.68
25027--25084	18	3.0	19	83	14	82	50	8	10	31	1.67
27741--27811	34	2.1	33	86	2	97	22	29	15	32	1.95
28165--28203	20	2.0	20	89	0	60	23	20	35	20	1.96
32690--32848	64	2.5	65	84	9	177	30	25	19	23	1.98
32711--32848	64	2.2	64	87	8	194	30	25	20	23	1.98
32711--32868	64	2.5	63	82	12	173	29	25	20	24	1.99
40249--40292	21	2.1	21	86	0	61	6	43	15	34	1.74
40983--41020	19	2.0	19	100	0	76	42	0	21	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41442--41474	17	1.9	17	93	0	57	27	39	18	15	1.90
41444--41604	64	2.5	64	82	8	186	29	24	19	26	1.99
43947--44016	2	35.0	2	100	0	140	50	0	0	50	1.00
47455--47487	17	1.9	17	93	0	57	39	12	12	36	1.80
54924--54954	6	5.2	6	92	0	53	35	0	16	48	1.46
55902--55936	12	2.9	12	82	0	52	71	0	22	5	1.07
56030--56072	21	2.0	21	82	8	52	34	2	2	60	1.22
58354--58391	14	2.7	14	100	0	76	23	18	5	52	1.65
58354--58404	14	3.6	14	91	0	66	21	17	5	54	1.63
60169--60228	12	4.8	12	76	13	59	80	1	11	6	0.98
60155--60229	19	4.1	18	77	14	66	80	1	13	5	0.95
62186--62394	101	2.1	101	84	8	275	30	18	12	39	1.87
62745--62858	44	2.6	45	77	4	106	29	19	16	34	1.94
68120--68164	20	2.3	19	88	3	63	53	8	4	33	1.52
68391--68450	30	2.0	30	87	3	86	43	25	5	26	1.75
68999--69062	29	2.2	29	94	0	110	46	12	7	32	1.70
69135--69191	29	1.9	30	92	3	98	50	10	3	35	1.54
69217--69243	14	1.9	14	100	0	54	14	7	25	51	1.68
69319--69785	246	1.9	245	91	2	767	41	11	5	40	1.66
71026--71117	18	5.0	18	72	17	57	75	0	7	17	1.03
71055--71113	10	5.6	10	77	18	66	76	0	5	18	0.97
71037--71117	16	5.1	16	72	15	53	75	0	7	17	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71091--71124	4	8.2	4	93	6	59	73	0	2	23	0.97
71427--71525	2	52.5	2	81	11	102	55	1	1	42	1.13
71421--71535	16	7.5	15	80	12	83	57	0	2	39	1.19
71998--72090	37	2.5	37	87	0	123	31	11	16	40	1.84
72824--73872	105	10.0	106	85	4	1312	24	18	23	33	1.96
72824--73858	313	3.3	314	86	5	1357	24	18	23	33	1.97
74682--74756	22	3.5	22	89	5	118	21	14	28	36	1.93
75338--75396	17	3.2	18	78	17	59	0	16	5	77	0.93
75337--75400	9	6.9	9	77	13	58	0	15	4	79	0.89
75347--75405	29	2.1	28	87	3	82	0	16	3	79	0.86
75344--75384	20	2.0	20	86	9	57	0	19	2	78	0.87

Tables:   1

The End!