genome.fa.s4389.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004389.1 Hibiscus syriacus cultivar Beakdansim tig00009623_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57270

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3952--4011	31	1.9	31	100	0	120	35	13	25	26	1.93
4097--4172	3	24.3	3	92	7	125	67	0	0	32	0.91
9287--9319	15	2.2	15	94	0	57	6	24	15	54	1.63
10518--10589	36	2.0	36	94	0	126	47	15	6	30	1.72
10528--10588	21	3.2	21	63	26	53	47	14	4	32	1.66
13752--13875	42	3.3	36	69	20	92	43	3	1	51	1.27
14232--14288	18	3.2	17	78	11	62	43	14	22	19	1.86
18024--18076	15	3.5	15	94	0	97	50	13	9	26	1.71
21837--21929	21	4.3	21	89	4	114	20	33	25	20	1.97
27291--27501	105	2.0	105	100	0	422	40	8	15	36	1.77
33155--33193	17	2.3	17	95	0	69	48	0	7	43	1.31
33251--33295	23	1.9	24	95	4	83	24	31	17	26	1.97
35373--35414	20	2.0	21	86	13	61	80	2	16	0	0.81
35368--35414	15	3.2	15	88	8	62	80	2	17	0	0.80
38191--38250	29	2.1	29	100	0	120	30	3	36	30	1.74
38872--38947	22	3.8	19	77	19	75	21	18	32	27	1.96
38872--38946	18	3.8	19	80	15	80	21	18	33	26	1.96
41668--41792	44	2.8	44	80	8	148	28	15	28	28	1.96
41670--41796	21	5.8	21	81	13	132	28	15	26	29	1.96
41670--41796	65	1.9	66	83	10	163	28	15	26	29	1.96
47458--47513	18	2.8	20	81	15	71	21	17	32	28	1.96
47861--48990	565	2.0	565	91	0	1850	28	22	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53741--53780	19	2.1	19	100	0	80	42	27	0	30	1.56

Tables:   1

The End!