genome.fa.s439.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000439.1 Hibiscus syriacus cultivar Beakdansim tig00000803_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75042

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11689--11776	45	1.9	46	90	2	142	27	23	19	29	1.98
12761--12835	37	2.0	37	97	0	141	18	17	28	36	1.94
12888--13016	42	3.1	41	83	7	154	34	20	17	27	1.95
13006--13030	13	1.9	13	100	0	50	24	20	24	32	1.98
16331--16431	40	2.6	39	84	6	134	14	27	34	22	1.94
16331--16411	20	4.2	20	88	4	121	14	28	35	20	1.93
20234--20273	21	1.9	21	85	10	55	35	10	2	52	1.48
22587--22611	13	1.9	13	100	0	50	24	20	24	32	1.98
22654--22734	42	1.9	42	89	0	126	32	23	19	24	1.98
22722--22746	13	1.9	13	100	0	50	24	20	24	32	1.98
22551--22869	135	2.4	135	90	1	496	29	22	18	28	1.98
22789--22871	42	2.0	42	87	0	121	33	19	18	28	1.95
27043--27208	44	3.6	47	80	5	196	34	20	13	31	1.91
27645--27669	13	1.9	13	100	0	50	72	24	0	4	1.02
30340--30371	3	11.3	3	87	12	50	62	0	0	37	0.95
30340--30369	11	2.7	11	100	0	60	63	0	0	36	0.95
32241--32336	28	3.4	28	87	4	140	13	6	32	47	1.68
32241--32336	29	3.4	29	88	2	135	13	6	32	47	1.68
35259--35348	45	2.0	45	91	0	144	27	12	27	32	1.92
35871--35937	23	3.0	23	70	12	66	31	16	22	29	1.96
35852--35937	45	1.9	45	95	0	154	31	13	23	31	1.94
35854--35924	22	3.2	22	71	11	72	32	12	22	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35131--36311	589	2.0	589	95	0	2121	34	14	22	28	1.93
36922--37008	45	1.9	45	85	0	120	34	8	22	34	1.84
44412--44445	3	11.0	3	93	6	59	32	0	0	67	0.91
45935--46038	30	3.5	30	87	0	136	50	24	23	2	1.63
45941--46063	30	4.1	30	85	4	115	49	21	24	4	1.67
45935--46050	60	1.9	60	81	6	137	49	24	23	3	1.66
46857--46886	2	15.0	2	100	0	60	50	0	0	50	1.00
54600--54664	27	2.4	27	92	0	112	38	29	6	26	1.80
54888--54968	33	2.4	33	78	17	87	65	1	1	32	1.08
54893--54956	24	2.6	24	80	14	69	67	1	1	29	1.09
65031--65061	16	1.9	16	93	0	53	54	22	9	12	1.67
65067--65110	11	3.8	11	77	11	52	36	22	18	22	1.95
65068--65134	24	2.8	24	93	0	107	34	23	19	22	1.97
68294--68359	2	34.0	2	93	6	118	51	0	0	48	1.00
73915--74145	113	2.0	114	84	6	299	42	4	12	39	1.63

Tables:   1

The End!