Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004393.1 Hibiscus syriacus cultivar Beakdansim tig00009637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 153965
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:6138 original size:2 final size:2
Alignment explanation
Indices: 6131--6167 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
6121 TGGCAGGTTG
6131 CT CT CT CT CT CT CT CT CT C- CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
6168 GCGTAAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:6155 original size:17 final size:17
Alignment explanation
Indices: 6133--6166 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6123 GCAGGTTGCT
6133 CTCTCTCTCTCTCTCTC
1 CTCTCTCTCTCTCTCTC
6150 CTCTCTCTCTCTCTCTC
1 CTCTCTCTCTCTCTCTC
6167 TGCGTAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (17 bp):
CTCTCTCTCTCTCTCTC
Found at i:12023 original size:3 final size:3
Alignment explanation
Indices: 12015--12067 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
12005 AATTATTTTT
* * *
12015 TAA TAA TAA TAA TTA TAA TAA TAA T-A TTA TTA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
12062 TAA TAA
1 TAA TAA
12068 AATGAGTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
2 2 0.04
3 44 0.96
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:12554 original size:113 final size:114
Alignment explanation
Indices: 12412--13087 Score: 943
Period size: 113 Copynumber: 6.0 Consensus size: 114
12402 ATAGGGTTAT
* ** *
12412 GCAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * ** * * *
12477 ATTATGAACTCTCTTCT-GAAAAGTTGATATATCGAGTGATGAATTCGA
66 ATTATGAACTTTCTTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGA
* * *
12525 GCGAAAA-ATTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 GC-AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * *
12589 TATTATGAA-TTTTTTCTGGAGAAGCTGATCCATCAAATGATGGATTTGA
65 CATTATGAACTTTCTTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGA
* * * *
12638 GCAAAAGATTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTTATTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
12703 ATTATGAACTTTC-TCTGGCAAAGCTAATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGA
*
12751 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* *
12816 ATTATGAACTTT-TTCTGGCAAAGATAATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGA
*
12864 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * **
12929 ATTATGAACTTT-TTCTGGCAAAGCTAATCCATCAAATGATGAATTCAA
66 ATTATGAACTTTCTTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGA
* * * *
12977 ACAAAAGGTTAAACAAAGTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
13042 ATTATGAACTTTC-TCTGGAAAAGCTGATCCATCAAGTGATGGATTT
66 ATTATGAACTTTCTTCTGGAAAAGCTAATCCATCAAGTGATGGATTT
13088 AAATCTTTGC
Statistics
Matches: 511, Mismatches: 46, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
112 10 0.02
113 494 0.97
114 7 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (114 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTCTTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGA
Found at i:13031 original size:24 final size:23
Alignment explanation
Indices: 12996--13040 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
12986 TAAACAAAGT
12996 CTTCTCATTATGAACTTCTTCTTC
1 CTTCTCATTATG-ACTTCTTCTTC
*
13020 CTTCTTCA-TATGAGTTCTTCT
1 CTTC-TCATTATGACTTCTTCT
13041 CATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.16, C:0.27, G:0.07, T:0.51
Consensus pattern (23 bp):
CTTCTCATTATGACTTCTTCTTC
Found at i:13948 original size:115 final size:114
Alignment explanation
Indices: 13775--14089 Score: 560
Period size: 115 Copynumber: 2.7 Consensus size: 114
13765 GATCATGCAG
* * *
13775 TTCATCTTTTAATTCCAATGATTGGTTCTGTAG-TTCCTACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGT-GTTTCATACCAAACCAGATCAGATAACTCAAAG
13839 AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGACCAAA
65 AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGACCAAA
13889 TTCATCTTTCAAATCCAATGATTGGTTCTGTGTTTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGTG-TTTCATACCAAACCAGATCAGATAACTCAAAG
*
13954 AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
65 AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGACCAAA
14004 TTCATCTTTCAAATCCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGT-GTTTCATACCAAACCAGATCAGATAACTCAAAG
14069 AACACTTCCAGAAGATGCTAT
65 AACACTTCCAGAAGATGCTAT
14090 GAGCACATTC
Statistics
Matches: 194, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
113 1 0.01
114 29 0.15
115 163 0.84
116 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.32
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGTGTTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGACCAAA
Found at i:15264 original size:8 final size:8
Alignment explanation
Indices: 15243--15306 Score: 64
Period size: 8 Copynumber: 8.2 Consensus size: 8
15233 TGACCCCCCT
15243 TTTTTCTTC
1 TTTTTC-TC
15252 TTTTTTCTC
1 -TTTTTCTC
*
15261 TTTTTTTC
1 TTTTTCTC
15269 TTTTT-TC
1 TTTTTCTC
15276 TTTTTCTC
1 TTTTTCTC
15284 TTTTT-T-
1 TTTTTCTC
*
15290 TCTTT-TC
1 TTTTTCTC
15297 TTTTTCTC
1 TTTTTCTC
15305 TT
1 TT
15307 CAAGCATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
6 5 0.10
7 12 0.25
8 23 0.48
9 2 0.04
10 6 0.12
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTCTC
Found at i:15283 original size:23 final size:23
Alignment explanation
Indices: 15244--15306 Score: 94
Period size: 23 Copynumber: 2.7 Consensus size: 23
15234 GACCCCCCTT
15244 TTTTCTTCTTTTTTCTCTTTTTTTC
1 TTTT-TTC-TTTTTCTCTTTTTTTC
15269 TTTTTTCTTTTTCTCTTTTTTTC
1 TTTTTTCTTTTTCTCTTTTTTTC
15292 --TTTTCTTTTTCTCTT
1 TTTTTTCTTTTTCTCTT
15307 CAAGCATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.39
23 16 0.42
24 3 0.08
25 4 0.11
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTCTTTTTCTCTTTTTTTC
Found at i:15287 original size:21 final size:21
Alignment explanation
Indices: 15243--15306 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
15233 TGACCCCCCT
* * *
15243 TTTTTCTTCTTT-TTTCTCTT
1 TTTTTCTTTTTTCTTTTTCTC
15263 TTTTTCTTTTTTCTTTTTCTC
1 TTTTTCTTTTTTCTTTTTCTC
15284 TTTTT-TTCTTTTCTTTTTCTC
1 TTTTTCTT-TTTTCTTTTTCTC
15305 TT
1 TT
15307 CAAGCATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
20 13 0.33
21 26 0.67
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTCTTTTTTCTTTTTCTC
Found at i:22656 original size:15 final size:15
Alignment explanation
Indices: 22633--22664 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22623 TGAAATGAAT
22633 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
22648 AATGCATGTATGCAA
1 AATGAATGTATGCAA
22663 AA
1 AA
22665 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:28051 original size:3 final size:3
Alignment explanation
Indices: 28043--28117 Score: 123
Period size: 3 Copynumber: 25.0 Consensus size: 3
28033 AATTATTTTT
*
28043 TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
28091 TAA TAA TAA TAA TTA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
28118 AATGAGTAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:29403 original size:6 final size:6
Alignment explanation
Indices: 29385--29480 Score: 88
Period size: 6 Copynumber: 16.2 Consensus size: 6
29375 TGTATCTGTT
* * * *
29385 ATAA-A ATAATA ATATTA ATAAAA ATAATA TTAAAA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
29432 ATAGTA ATAAAA ATAAAA ATAAAA ATAAAA ATAATA A-ATATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATA-ATA ATAATA
29480 A
1 A
29481 AAAAACCAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
5 5 0.07
6 70 0.92
7 1 0.01
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (6 bp):
ATAATA
Found at i:29410 original size:12 final size:12
Alignment explanation
Indices: 29385--29483 Score: 101
Period size: 12 Copynumber: 8.1 Consensus size: 12
29375 TGTATCTGTT
*
29385 ATAA-AATAATA
1 ATAATAATAAAA
*
29396 ATATTAATAAAA
1 ATAATAATAAAA
*
29408 ATAATATTAAAA
1 ATAATAATAAAA
*
29420 ATAATAATAATA
1 ATAATAATAAAA
*
29432 ATAGTAATAAAA
1 ATAATAATAAAA
*
29444 ATAAAAATAAAA
1 ATAATAATAAAA
*
29456 ATAAAAATAATAAAT
1 AT---AATAATAAAA
29471 ATAATAATAAAA
1 ATAATAATAAAA
29483 A
1 A
29484 AACCAAATAT
Statistics
Matches: 71, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
11 3 0.04
12 58 0.82
15 10 0.14
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (12 bp):
ATAATAATAAAA
Found at i:29410 original size:18 final size:18
Alignment explanation
Indices: 29387--29483 Score: 104
Period size: 18 Copynumber: 5.2 Consensus size: 18
29377 TATCTGTTAT
*
29387 AAAATAATAATATTAATA
1 AAAATAATAATAATAATA
* *
29405 AAAATAATATTAAAAATA
1 AAAATAATAATAATAATA
* *
29423 ATAATAATAATAGTAATA
1 AAAATAATAATAATAATA
* *
29441 AAAATAAAAATAAAAATA
1 AAAATAATAATAATAATA
29459 AAAATAATAAATATAATAATA
1 AAAATAAT--A-ATAATAATA
29480 AAAA
1 AAAA
29484 AACCAAATAT
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
18 50 0.79
20 1 0.02
21 12 0.19
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (18 bp):
AAAATAATAATAATAATA
Found at i:29424 original size:21 final size:21
Alignment explanation
Indices: 29389--29483 Score: 111
Period size: 21 Copynumber: 4.5 Consensus size: 21
29379 TCTGTTATAA
* *
29389 AATAATAATATTAATAAAAAT
1 AATAATAAAAATAATAAAAAT
* *
29410 AATATTAAAAATAATAATAAT
1 AATAATAAAAATAATAAAAAT
*
29431 AATAGTAATAAA-AATAAAAAT
1 AATAATAA-AAATAATAAAAAT
* *
29452 AAAAATAAAAATAATAAATAT
1 AATAATAAAAATAATAAAAAT
29473 AATAATAAAAA
1 AATAATAAAAA
29484 AACCAAATAT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
20 3 0.05
21 56 0.90
22 3 0.05
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (21 bp):
AATAATAAAAATAATAAAAAT
Found at i:29491 original size:21 final size:20
Alignment explanation
Indices: 29436--29503 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
29426 ATAATAATAG
29436 TAATAAAAATAA-AAATA-AA
1 TAATAAAAA-AACAAATATAA
*
29455 -AATAAAAATAATAAATATAA
1 TAATAAAAA-AACAAATATAA
29475 TAATAAAAAAACCAAATAT-A
1 TAATAAAAAAA-CAAATATAA
29495 TAA-AAAAAA
1 TAATAAAAAA
29504 CTAATGTCTT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
18 11 0.25
19 11 0.25
20 8 0.18
21 14 0.32
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (20 bp):
TAATAAAAAAACAAATATAA
Found at i:31200 original size:72 final size:72
Alignment explanation
Indices: 31111--31246 Score: 236
Period size: 72 Copynumber: 1.9 Consensus size: 72
31101 ATACAATAAA
* *
31111 GCTTGAGTTATCTCCCTAAAGCAATTAGTTAATAGCCCCGGCTTTATGGATAATATTCAACTAAT
1 GCTTGAGTTATCCCCCTAAAGCAATTAGTTAATAGCCCCGGCTTTATGAATAATATTCAACTAAT
31176 CTGTTAT
66 CTGTTAT
* *
31183 GCTTGAGTTATCCCCCTAAAGCAATTAGTTAATCGCCCTGGCTTTATGAATAATATTCAACTAA
1 GCTTGAGTTATCCCCCTAAAGCAATTAGTTAATAGCCCCGGCTTTATGAATAATATTCAACTAA
31247 CTTATTATAC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35
Consensus pattern (72 bp):
GCTTGAGTTATCCCCCTAAAGCAATTAGTTAATAGCCCCGGCTTTATGAATAATATTCAACTAAT
CTGTTAT
Found at i:34556 original size:22 final size:22
Alignment explanation
Indices: 34528--34606 Score: 122
Period size: 22 Copynumber: 3.6 Consensus size: 22
34518 ACATCTACAT
34528 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
* *
34550 TCTTCAAATATGGTAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
34572 TCTTTAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
34594 TTTTCAAAGATGA
1 TCTTCAAAGATGA
34607 AATCCTTATT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:35345 original size:45 final size:45
Alignment explanation
Indices: 35276--36048 Score: 992
Period size: 47 Copynumber: 16.8 Consensus size: 45
35266 ATATTTCCCA
*
35276 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
35321 CATCTGTAAGCCCTTCAGTACATGATGTTTTCAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
35366 CATATGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTC-GGGT
* *
35412 CTTCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCAGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
35457 CATCTATAAGCCCTTCAGTGCATGATG-TTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
35501 CATCTGTAAGCCCTTCACTGCATGATGTTTTCAAAACATTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
35546 CATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTTGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
35591 CATCTGTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCAGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
**
35636 CATCTGTAATTCCTTCAGTGCATGATGTTTTCAAAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC--AAAACCTTCGGGT
*
35683 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAACCTTTGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC--AAAACCTTCGGGT
* *
35730 CATCTATAAGCCCTTCAGTGCATGATGTATTCAAAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC--AAAACCTTCGGGT
* * * *
35777 CATCTATAAGACCTTCAGTGTAGGATGTTTTCAAAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCGGGT
* * *
35824 CATCCGTAAGACCTTCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCGGGT
* * * *
35871 CATCCGTAAGACCTTCAGTGCAGGATGTTTTCAAAAAAGCCTTTGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC--AAAA-CCTTCGGGT
* * * *
35919 CATCCGTAAGACCTTTAGTGCAGGATGTTTTCAAAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCGGGT
* *** *
35966 CATCCGTAAGAAATTCAGTGCAGGAT-TCTTTCAAAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGT-TTTC-AAAA-CCTTCGGGT
* * *
36013 CATCTGTAAGACTTTCAGTGCAAGATGTTTTCAAAA
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAA
36049 GAGATTTTAA
Statistics
Matches: 672, Mismatches: 48, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
44 41 0.06
45 237 0.35
46 53 0.08
47 295 0.44
48 46 0.07
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (45 bp):
CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
Found at i:36785 original size:11 final size:11
Alignment explanation
Indices: 36765--36795 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
36755 ATAAATTTCA
36765 AATAAT-AAAT
1 AATAATAAAAT
36775 AATAATAAAAT
1 AATAATAAAAT
36786 AATAATAAAA
1 AATAATAAAA
36796 GACAAAATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:37044 original size:3 final size:3
Alignment explanation
Indices: 37029--37090 Score: 85
Period size: 3 Copynumber: 21.7 Consensus size: 3
37019 TCCTTTTTAT
* *
37029 TTA TTA TTT TTA TTA -TA TTA TTA -TA TTA TTA TTA TTA TTA -GA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37074 TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
37091 TTCTTGAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
2 5 0.10
3 47 0.90
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:37051 original size:17 final size:18
Alignment explanation
Indices: 37029--37092 Score: 78
Period size: 17 Copynumber: 3.6 Consensus size: 18
37019 TCCTTTTTAT
37029 TTATTATTTTTATTA-TA
1 TTATTATTTTTATTATTA
37046 TTATTATATTATTATTATTA
1 TTATTAT-TT-TTATTATTA
* *
37066 TTA-GATTATTATTATTA
1 TTATTATTTTTATTATTA
37083 TTATTATTTT
1 TTATTATTTT
37093 CTTGAAATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 19 0.49
18 7 0.18
19 8 0.21
20 5 0.13
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TTATTATTTTTATTATTA
Found at i:38551 original size:46 final size:46
Alignment explanation
Indices: 38485--38572 Score: 160
Period size: 46 Copynumber: 1.9 Consensus size: 46
38475 GATTTCATTT
38485 TTTTTCTAAACAAAGCATGGAACTAGAAATCATGCA-GTTAGGTTAA
1 TTTTTCTAAACAAAGCATGGAACTAGAAATCATG-AGGTTAGGTTAA
38531 TTTTTCTAAACAAAGCATGGAACTAGAAATCATGAGGTTAGG
1 TTTTTCTAAACAAAGCATGGAACTAGAAATCATGAGGTTAGG
38573 ATTTATACCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
45 1 0.02
46 40 0.98
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (46 bp):
TTTTTCTAAACAAAGCATGGAACTAGAAATCATGAGGTTAGGTTAA
Found at i:40360 original size:21 final size:20
Alignment explanation
Indices: 40328--40372 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
40318 GAGTAACACC
40328 TTTTCATATTTGCATTTGCA
1 TTTTCATATTTGCATTTGCA
* *
40348 TTTTACATCTTTGCATTTTCA
1 TTTT-CATATTTGCATTTGCA
40369 TTTT
1 TTTT
40373 GTATTCATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.18, C:0.16, G:0.07, T:0.60
Consensus pattern (20 bp):
TTTTCATATTTGCATTTGCA
Found at i:42555 original size:72 final size:72
Alignment explanation
Indices: 42465--42600 Score: 263
Period size: 72 Copynumber: 1.9 Consensus size: 72
42455 ATACAATAAA
42465 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCTGGCTTTATGGATAATATTCAGCTAAT
1 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCTGGCTTTATGGATAATATTCAGCTAAT
42530 CCGTTAT
66 CCGTTAT
*
42537 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATCGCCCTGGCTTTATGGATAATATTCAGCTAA
1 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCTGGCTTTATGGATAATATTCAGCTAA
42601 CTTATTATAC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (72 bp):
GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCTGGCTTTATGGATAATATTCAGCTAAT
CCGTTAT
Found at i:44310 original size:20 final size:20
Alignment explanation
Indices: 44285--44325 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
44275 CGGCACTCAT
44285 CAAGAACATACTTCTGGACA
1 CAAGAACATACTTCTGGACA
*
44305 CAAGAACATACTTTTGGACA
1 CAAGAACATACTTCTGGACA
44325 C
1 C
44326 TCGAAGATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (20 bp):
CAAGAACATACTTCTGGACA
Found at i:45952 original size:22 final size:22
Alignment explanation
Indices: 45924--46002 Score: 104
Period size: 22 Copynumber: 3.6 Consensus size: 22
45914 ACATCTACAT
45924 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
* * *
45946 TCTTCAAATATGGTTGATTCTC
1 TCTTCAAAGATGATAGATTCTC
* *
45968 TCTTCAAAGATGATAAATTCTA
1 TCTTCAAAGATGATAGATTCTC
*
45990 TTTTCAAAGATGA
1 TCTTCAAAGATGA
46003 AAGCCTTATT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:46256 original size:45 final size:45
Alignment explanation
Indices: 46192--46865 Score: 990
Period size: 45 Copynumber: 14.8 Consensus size: 45
46182 CTATTTCCCA
*
46192 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
46237 CATCTGTAAG-CCTTCCAGTGCATGATGTTTTCAAAGCCTTCAGGT
1 CATCTGTAAGCCCTT-CAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
46282 CATATGTAAGCCCTTCAGTGCATTATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
46327 TATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
46372 CAACTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
46417 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTTGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
46462 CATCTGTGAGCCCTTCCGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
46507 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
46552 CATCTGTAAGCCTTTTAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
46597 CATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC--AAAACCTTCGGGT
46644 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCATAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCA-AAACCTTCGGGT
*
46690 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAATAAACCTTTGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-A-AAACCTTCGGGT
** * *
46737 CATCTGTAATACCTTCAATGCAGGATGTTTTCAAAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCGGGT
* * * * * *
46784 CATCCGTAAGACCTTCAGTGAAGGATATTTTCAAAAAGCCTTTGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCGGGT
* * * *
46831 CATCCGTAAGACCTTCAATGCAGGATGTTTTCAAA
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
46866 TAAGATTTTA
Statistics
Matches: 582, Mismatches: 40, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
44 4 0.01
45 359 0.62
46 54 0.09
47 165 0.28
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (45 bp):
CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
Found at i:47098 original size:132 final size:132
Alignment explanation
Indices: 46831--47192 Score: 559
Period size: 132 Copynumber: 2.8 Consensus size: 132
46821 GCCTTTGGGT
* * * *
46831 CATCCGTAAGACCTTCAATGCAGGATGTTTTCAAATAAGATTTTAAGAAACTGATTTTCAAA-TT
1 CATCCATAAGACCTTCAGTCCAGGATGTTTTCAAATGAGATTTTAAGAAACTGATTTTCAAAGTT
* *
46895 TTTTTTTATCTTAAATCCTCCAGGTCATCTGTAAGACCTACAGTGCAAGATAATAAGACCTCATG
66 TTTTTTTATCTTAAATCCTCCGGGTCATCTGTAAGACCTACAGTGCAAGATAATAAGACCTCAAG
*
46960 GT
131 GC
* *
46962 CATCCATAAGACC-TCCGTTCCAGGATGTTTTCAAATGAGATTTTAATAAACTGATTTTCAAAGT
1 CATCCATAAGACCTTCAG-TCCAGGATGTTTTCAAATGAGATTTTAAGAAACTGATTTTCAAAGT
* *
47026 TTTTTTTTATCTTAAATCCTCTGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAA
65 TTTTTTTTATCTTAAATCCTCCGGGTCATCTGTAAGACCTACAGTGCAAGATAATAAGACCTCAA
47091 GGC
130 GGC
* * * *
47094 CATCCATAAGACCTTCAGTGCATGATGTTTTCAAATGAGATTTTAAGAAAATGATTTTCAAAG-G
1 CATCCATAAGACCTTCAGTCCAGGATGTTTTCAAATGAGATTTTAAGAAACTGATTTTCAAAGTT
47158 TTTTTTTATCTTAAATCCTCCGGGTCATCTGTAAG
66 TTTTTTTATCTTAAATCCTCCGGGTCATCTGTAAG
47193 CCTTCCGAGC
Statistics
Matches: 210, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
130 2 0.01
131 87 0.41
132 118 0.56
133 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (132 bp):
CATCCATAAGACCTTCAGTCCAGGATGTTTTCAAATGAGATTTTAAGAAACTGATTTTCAAAGTT
TTTTTTTATCTTAAATCCTCCGGGTCATCTGTAAGACCTACAGTGCAAGATAATAAGACCTCAAG
GC
Found at i:47397 original size:3 final size:3
Alignment explanation
Indices: 47389--47447 Score: 82
Period size: 3 Copynumber: 19.3 Consensus size: 3
47379 CATTTTTAAA
* * *
47389 ATT ATT ATT ATT ATT ATT ATA AAT ATT ATT ATT ATT ATT ATT AAAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
47435 ATT ATT ATT ATT A
1 ATT ATT ATT ATT A
47448 CAGGCCCAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
3 47 0.96
4 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:47698 original size:23 final size:23
Alignment explanation
Indices: 47666--47726 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
47656 CCATGTCTCT
* *
47666 CCAACTACTCTGCCGCTTCTACG
1 CCAACCACTCCGCCGCTTCTACG
*
47689 CCAACCACTCCGTCGCTTCTACG
1 CCAACCACTCCGCCGCTTCTACG
*
47712 CCAACCACTACGCCG
1 CCAACCACTCCGCCG
47727 TTATGTTCCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.20, C:0.48, G:0.13, T:0.20
Consensus pattern (23 bp):
CCAACCACTCCGCCGCTTCTACG
Found at i:48833 original size:17 final size:17
Alignment explanation
Indices: 48801--48834 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
48791 TAATATATAT
**
48801 TAATAATAAATTACAAA
1 TAATAATAAAAGACAAA
48818 TAATAATAAAAGACAAA
1 TAATAATAAAAGACAAA
48835 ATGCTTAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (17 bp):
TAATAATAAAAGACAAA
Found at i:49078 original size:3 final size:3
Alignment explanation
Indices: 49063--49119 Score: 75
Period size: 3 Copynumber: 20.0 Consensus size: 3
49053 TCCTTTTTAT
*
49063 TTA TTA TTT TTA TTA -TA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
49109 -GA TTA TTA TTA
1 TTA TTA TTA TTA
49120 ATAATTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 5 0.11
3 42 0.89
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:49081 original size:14 final size:14
Alignment explanation
Indices: 49059--49119 Score: 81
Period size: 14 Copynumber: 4.4 Consensus size: 14
49049 TTTGTCCTTT
*
49059 TTATT-TATTATTT
1 TTATTATATTATTA
49072 TTATTATATTATTA
1 TTATTATATTATTA
49086 TTATTATATTATTA
1 TTATTATATTATTA
*
49100 TTATTAT-TAGATTA
1 TTATTATAT-TATTA
49114 TTATTA
1 TTATTA
49120 ATAATTTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
13 6 0.14
14 38 0.86
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (14 bp):
TTATTATATTATTA
Found at i:49085 original size:17 final size:16
Alignment explanation
Indices: 49059--49118 Score: 72
Period size: 17 Copynumber: 3.8 Consensus size: 16
49049 TTTGTCCTTT
49059 TTAT-TTATTATTTTTA
1 TTATATTATTA-TTTTA
49075 TTATATTATTA--TTA
1 TTATATTATTATTTTA
49089 TTATATTATTATTATTA
1 TTATATTATTATT-TTA
*
49106 TTAGATTATTATT
1 TTATATTATTATT
49119 AATAATTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
14 14 0.36
16 4 0.10
17 21 0.54
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (16 bp):
TTATATTATTATTTTA
Found at i:49119 original size:17 final size:17
Alignment explanation
Indices: 49078--49119 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
49068 ATTTTTATTA
*
49078 TATTATTATTATTATAT
1 TATTATTATTATTAGAT
49095 TATTATTATTATTAGAT
1 TATTATTATTATTAGAT
49112 TATTATTA
1 TATTATTA
49120 ATAATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (17 bp):
TATTATTATTATTAGAT
Found at i:49333 original size:2 final size:2
Alignment explanation
Indices: 49326--49354 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
49316 ATAATGTTTA
49326 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
49355 CTTTATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57917 original size:25 final size:24
Alignment explanation
Indices: 57871--57917 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
57861 ATCATAATAT
* **
57871 ATAGTCAAATTTTTTATTTTTCGA
1 ATAGTCAAAATTTTTAAATTTCGA
57895 ATAGTTCAAAATTTTTAAATTTC
1 ATAG-TCAAAATTTTTAAATTTC
57918 AATTCGGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (24 bp):
ATAGTCAAAATTTTTAAATTTCGA
Found at i:58204 original size:17 final size:17
Alignment explanation
Indices: 58182--58229 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
58172 ACTATGTGAA
58182 ATGAGTAGGGAGACGAT
1 ATGAGTAGGGAGACGAT
58199 ATGAGTAGGGAGACGAT
1 ATGAGTAGGGAGACGAT
*
58216 ATGAGTCGGGAGAC
1 ATGAGTAGGGAGAC
58230 AAATTGGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.33, C:0.08, G:0.42, T:0.17
Consensus pattern (17 bp):
ATGAGTAGGGAGACGAT
Found at i:58814 original size:13 final size:14
Alignment explanation
Indices: 58796--58829 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
58786 TATGATGGTT
*
58796 ATATTTTTTTAA-A
1 ATATTTTTTAAATA
58809 ATATTTTTTAAATA
1 ATATTTTTTAAATA
58823 ATATTTT
1 ATATTTT
58830 ATTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATATTTTTTAAATA
Found at i:64970 original size:66 final size:67
Alignment explanation
Indices: 64846--65027 Score: 201
Period size: 66 Copynumber: 2.7 Consensus size: 67
64836 GGATGATGAT
* * *
64846 TCTTTTGAATATCTCAAATTTAAAGGTATTCATTATCTATTTAACTTTGAAAATTAAAAGAAAAT
1 TCTTTTGAATATCTCAAA-TTAAA-ATAATCATTATATATTTAACTTTGAAAATTAAAAGAAAAT
64911 TATA
64 TATA
* ** *
64915 TCATTTTGAATATCTCAAATTAAAATAAT-A-TATATATTTAAGTTTGAATAA-TAAAAGCTACT
1 TC-TTTTGAATATCTCAAATTAAAATAATCATTATATATTTAACTTTGAA-AATTAAAAGAAAAT
64977 TATA
64 TATA
* *
64981 TCTTTTGAATAT-TACAAATTAAAATATATTATTATCTATTTAACTTT
1 TCTTTTGAATATCT-CAAATTAAAATA-ATCATTATATATTTAACTTT
65028 CAGTATTAAA
Statistics
Matches: 98, Mismatches: 9, Indels: 13
0.82 0.08 0.11
Matches are distributed among these distances:
64 1 0.01
65 22 0.22
66 32 0.33
67 4 0.04
68 16 0.16
69 7 0.07
70 16 0.16
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.44
Consensus pattern (67 bp):
TCTTTTGAATATCTCAAATTAAAATAATCATTATATATTTAACTTTGAAAATTAAAAGAAAATTA
TA
Found at i:69490 original size:64 final size:63
Alignment explanation
Indices: 69236--69478 Score: 205
Period size: 64 Copynumber: 3.8 Consensus size: 63
69226 TTCATATTCC
* *
69236 TTTTGAATATTACAAATTAAAAGATATTTATTTCTTT-AATTTGAATATTAATAGGATAATTAT-
1 TTTTGAATATTTCAAATTAAAAGACATTTATTTCTTTAAATTTGAATATTAA-A-GATAATTATA
* * * *
69299 TGTTTGAATATATCAAATTAAAAGGCATTTATTATCTACTTAACTTTGAATATTAAATATAATTA
1 T-TTTGAATATTTCAAATTAAAAGACATTTATT-TCT--TTAAATTTGAATATTAAAGATAATTA
69364 TA
62 TA
* * * * * * * *
69366 TTATTGAATATCTCAAATTAGAATA-A--AATTTATTTAAGTTTGAATAGTAAAAGCT-ATCTAT
1 TT-TTGAATATTTCAAATTAAAAGACATTTATTTCTTTAAATTTGAATA-TTAAAGATAAT-TAT
69427 A
63 A
69428 TCTTTGAATATTTCAAATTAAAAGACA-TTATCTT-TTTAAATTTGAATATTA
1 T-TTTGAATATTTCAAATTAAAAGACATTTAT-TTCTTTAAATTTGAATATTA
69479 GAATATATCT
Statistics
Matches: 145, Mismatches: 22, Indels: 26
0.75 0.11 0.13
Matches are distributed among these distances:
61 14 0.10
62 29 0.20
63 7 0.05
64 45 0.31
65 5 0.03
66 10 0.07
67 22 0.15
68 13 0.09
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (63 bp):
TTTTGAATATTTCAAATTAAAAGACATTTATTTCTTTAAATTTGAATATTAAAGATAATTATA
Found at i:71016 original size:31 final size:31
Alignment explanation
Indices: 70978--71039 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
70968 AAGTGTTCTA
*
70978 TACGAGCTGTGGCGAGAGGATGAAGTTTTGC
1 TACGAGCTGTGGCGAGAGGATGAAGCTTTGC
*
71009 TACGAGCTGTGGTGAGAGGATGAAGCTTTGC
1 TACGAGCTGTGGCGAGAGGATGAAGCTTTGC
71040 ATGTGCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.13, G:0.39, T:0.26
Consensus pattern (31 bp):
TACGAGCTGTGGCGAGAGGATGAAGCTTTGC
Found at i:71072 original size:22 final size:22
Alignment explanation
Indices: 71044--71094 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
71034 CTTTGCATGT
71044 GCCATGCACGTC-AGAAGAGGTC
1 GCCATGCACGTCGA-AAGAGGTC
71066 GCCATGCACGTCGAAAGAGGTC
1 GCCATGCACGTCGAAAGAGGTC
71088 GCC-TGCA
1 GCCATGCA
71095 TGCAGTGGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.14
22 23 0.82
23 1 0.04
ACGTcount: A:0.25, C:0.29, G:0.31, T:0.14
Consensus pattern (22 bp):
GCCATGCACGTCGAAAGAGGTC
Found at i:71178 original size:29 final size:29
Alignment explanation
Indices: 71140--71227 Score: 115
Period size: 29 Copynumber: 3.0 Consensus size: 29
71130 AGCGGGCAGG
*
71140 ACAAGGTCGCCCAGCGTGCATGGCGACCT
1 ACAAGGTCGCCCGGCGTGCATGGCGACCT
* * *
71169 ACCATGTCGCCTGGCGTGCATGGCGACCT
1 ACAAGGTCGCCCGGCGTGCATGGCGACCT
*
71198 ACAAGGTCGCCCGGAG-GACATGGCGACCT
1 ACAAGGTCGCCCGGCGTG-CATGGCGACCT
71227 A
1 A
71228 TACTGAGAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
28 1 0.02
29 49 0.98
ACGTcount: A:0.20, C:0.33, G:0.32, T:0.15
Consensus pattern (29 bp):
ACAAGGTCGCCCGGCGTGCATGGCGACCT
Found at i:79076 original size:2 final size:2
Alignment explanation
Indices: 79069--79103 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
79059 CAGTAAATTA
79069 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79104 CTTTTCTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:79436 original size:17 final size:17
Alignment explanation
Indices: 79416--79451 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
79406 AATTAAATTA
79416 CTTGATAATCTAAAACC
1 CTTGATAATCTAAAACC
79433 CTTGATAATCTAAAACC
1 CTTGATAATCTAAAACC
79450 CT
1 CT
79452 AGAAGTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.31
Consensus pattern (17 bp):
CTTGATAATCTAAAACC
Found at i:83170 original size:2 final size:2
Alignment explanation
Indices: 83165--83208 Score: 72
Period size: 2 Copynumber: 22.0 Consensus size: 2
83155 TTTTTTTAAA
83165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AGT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
83207 AT
1 AT
83209 TAATAATTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.03
2 37 0.93
3 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85391 original size:7 final size:7
Alignment explanation
Indices: 85379--85405 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
85369 TATGTGAAAA
85379 ATATATG
1 ATATATG
85386 ATATATG
1 ATATATG
85393 ATATATG
1 ATATATG
85400 ATATAT
1 ATATAT
85406 ATGTGTGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (7 bp):
ATATATG
Found at i:85412 original size:2 final size:2
Alignment explanation
Indices: 85407--85431 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
85397 ATGATATATA
85407 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
85432 TTATGTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:88419 original size:34 final size:34
Alignment explanation
Indices: 88381--88553 Score: 176
Period size: 34 Copynumber: 4.9 Consensus size: 34
88371 AATATATATA
88381 ATATATAATTTTTAAAATCATTTTGAAAA-ATTAT
1 ATATATAATTTTTAAAA-CATTTTGAAAACATTAT
*
88415 ATATATAATTTTTGAAAACATTTTTGAAAACA-CAT
1 ATATATAATTTTT-AAAACA-TTTTGAAAACATTAT
* *
88450 ATATTATAGTTTTGAAAACATTTTGAAAACATTTAT
1 ATA-TATAATTTTTAAAACATTTTGAAAACA-TTAT
*
88486 ATATTATATAGTTTTTAAAACGTTTTTGAAAAC-TTAT
1 ATA-TATA-A-TTTTTAAAAC-ATTTTGAAAACATTAT
*
88523 ATA-AT-ATTTTTGAAAACATGTTGAAAACATT
1 ATATATAATTTTT-AAAACATTTTGAAAACATT
88554 CGTATATTAT
Statistics
Matches: 119, Mismatches: 9, Indels: 23
0.79 0.06 0.15
Matches are distributed among these distances:
32 14 0.12
33 8 0.07
34 26 0.22
35 26 0.22
36 19 0.16
37 7 0.06
38 9 0.08
39 10 0.08
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (34 bp):
ATATATAATTTTTAAAACATTTTGAAAACATTAT
Found at i:88437 original size:12 final size:12
Alignment explanation
Indices: 88422--88446 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
88412 TATATATATA
88422 ATTTTTGAAAAC
1 ATTTTTGAAAAC
88434 ATTTTTGAAAAC
1 ATTTTTGAAAAC
88446 A
1 A
88447 CATATATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
ATTTTTGAAAAC
Found at i:88475 original size:11 final size:11
Alignment explanation
Indices: 88459--88483 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
88449 TATATTATAG
88459 TTTTGAAAACA
1 TTTTGAAAACA
88470 TTTTGAAAACA
1 TTTTGAAAACA
88481 TTT
1 TTT
88484 ATATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:88487 original size:108 final size:104
Alignment explanation
Indices: 88357--88551 Score: 266
Period size: 108 Copynumber: 1.8 Consensus size: 104
88347 TTTTATAAAA
*
88357 AAAACGTTTTAAAAAATATATATAATATATAATTTTTAAAATC-ATTTTGAAAAATTATATATAT
1 AAAACATTTTAAAAAATATATATAATATATAATTTTTAAAA-CGATTTTGAAAAATTATATA-AT
*
88421 AATTTTTGAAAACATTTTTGAAAACACATATATTATAGTTTTG
64 -ATTTTTGAAAACA-TGTTGAAAACACATATATTATAGTTTTG
* * * * * *
88464 AAAACATTTTGAAAACATTTATATATTATATAGTTTTTAAAACGTTTTTGAAAACTTATATAATA
1 AAAACATTTT-AAAAAATATATATAATATATAATTTTTAAAACGATTTTGAAAAATTATATAATA
88529 TTTTTGAAAACATGTTGAAAACA
65 TTTTTGAAAACATGTTGAAAACA
88552 TTCGTATATT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
105 10 0.13
106 13 0.17
107 12 0.15
108 43 0.55
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.42
Consensus pattern (104 bp):
AAAACATTTTAAAAAATATATATAATATATAATTTTTAAAACGATTTTGAAAAATTATATAATAT
TTTTGAAAACATGTTGAAAACACATATATTATAGTTTTG
Found at i:88540 original size:71 final size:74
Alignment explanation
Indices: 88381--88570 Score: 231
Period size: 71 Copynumber: 2.7 Consensus size: 74
88371 AATATATATA
88381 ATATAT-A-ATTTTT-AAAATCATTTTGAAAA-A-TTATATA-TATA-A-TTTTTGAAAACATTT
1 ATATATAATATTTTTGAAAA-CATTTTGAAAACATTTATATATTATATAGTTTTTGAAAACATTT
88438 TTGAAAACAC
65 TTGAAAACAC
* * *
88448 ATATATTATAGTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTT-AAAACGTTTT
1 ATATATAATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTTGAAAACATTTT
88512 TG-AAA-AC
66 TGAAAACAC
* * **
88519 TTATATAATATTTTTGAAAACATGTTGAAAACATTCGTATATTATATAGTTT
1 ATATATAATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTT
88571 AAGAAAAAAA
Statistics
Matches: 107, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
67 6 0.06
68 1 0.01
69 16 0.15
70 5 0.05
71 55 0.51
72 7 0.07
73 12 0.11
74 5 0.05
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (74 bp):
ATATATAATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTTGAAAACATTTT
TGAAAACAC
Found at i:88601 original size:71 final size:70
Alignment explanation
Indices: 88381--88600 Score: 175
Period size: 71 Copynumber: 3.1 Consensus size: 70
88371 AATATATATA
* * **
88381 ATATATAATTTTT-AAAATCATTTTGAAAA-ATT-ATATA-TATA-ATTTTTGAAAAC-ATTTTT
1 ATATAT-ATTTTTGAAAA-CATGTTGAAAACATTCATATATTATATAGTTTAAAAAACGA-TTTT
*
88440 GAAAACACAT
63 G-AAA-ACTT
* * * ** *
88450 ATATTATAGTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTTAAAACGTTTTTGA
1 ATA-TATATTTTTGAAAACATGTTGAAAACATTCATATATTATATAGTTTAAAAAACGATTTTGA
88515 AAACTT
65 AAACTT
*
88521 ATATAATATTTTTGAAAACATGTTGAAAACATTCGTATATTATATAGTTTAAGAAAAAAAC-ATT
1 ATAT-ATATTTTTGAAAACATGTTGAAAACATTCATATATTATATAGTTT----AAAAAACGATT
*
88585 TTGAAAATTT
61 TTGAAAACTT
88595 ATATAT
1 ATATAT
88601 TATATGTTTT
Statistics
Matches: 126, Mismatches: 13, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
69 19 0.15
70 11 0.09
71 52 0.41
72 7 0.06
73 17 0.13
74 15 0.12
75 5 0.04
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.43
Consensus pattern (70 bp):
ATATATATTTTTGAAAACATGTTGAAAACATTCATATATTATATAGTTTAAAAAACGATTTTGAA
AACTT
Found at i:88615 original size:25 final size:27
Alignment explanation
Indices: 88583--88632 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
88573 GAAAAAAACA
88583 TTTTGAAAAT-TTATATAT-TATATGT
1 TTTTGAAAATATTATATATATATATGT
*
88608 TTTTGAAAATATTATGTATATATAT
1 TTTTGAAAATATTATATATATATAT
88633 TATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 7 0.32
27 5 0.23
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (27 bp):
TTTTGAAAATATTATATATATATATGT
Found at i:88638 original size:3 final size:3
Alignment explanation
Indices: 88617--88670 Score: 74
Period size: 3 Copynumber: 17.3 Consensus size: 3
88607 TTTTTGAAAA
88617 TAT TAT GTA- TAT ATAT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT -TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
88664 TAT TAT T
1 TAT TAT T
88671 CATTTTTTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
2 2 0.04
3 37 0.79
4 8 0.17
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:89895 original size:20 final size:20
Alignment explanation
Indices: 89855--89914 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 20
89845 CTTTAAAATA
89855 ATTTTTTT-TTTCGTTTATT-T
1 ATTTTTTTATTT-GTTT-TTAT
89875 AATTTTTCTTCATTT-TTTTTAT
1 -ATTTTT-TT-ATTTGTTTTTAT
89897 ATTTTTTTATTTGTTTTT
1 ATTTTTTTATTTGTTTTT
89915 CTATCTAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
19 4 0.12
20 7 0.21
21 14 0.41
22 6 0.18
24 3 0.09
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.78
Consensus pattern (20 bp):
ATTTTTTTATTTGTTTTTAT
Found at i:89913 original size:19 final size:20
Alignment explanation
Indices: 89872--89913 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
89862 TTTTCGTTTA
*
89872 TTTAATTTTTCTTCATTTTT
1 TTTAATTTTTCTTCATTTGT
89892 TTTATATTTTT-TT-ATTTGT
1 TTTA-ATTTTTCTTCATTTGT
89911 TTT
1 TTT
89914 TCTATCTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 6 0.30
21 6 0.30
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTAATTTTTCTTCATTTGT
Found at i:95260 original size:164 final size:164
Alignment explanation
Indices: 95018--95661 Score: 941
Period size: 164 Copynumber: 3.9 Consensus size: 164
95008 ACCTGCCACC
95018 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
*
95083 AAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
66 AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
*
95148 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGAA
131 CATAACTCAAGGCAAGAAGGGTTATCTGTTAGAA
* *
95182 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* *
95247 AAGAGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
66 AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
* *
95312 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
131 CATAACTCAAGGCAAGAAGGGTTATCTGTTAGAA
*
95346 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * * * ** * *
95411 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGGTTACGCTCAGCTTCGAGGGCGCATCATTTGCAG
66 AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
* * **
95476 CATAACTTAAGTCAAGAAGGGTTATCTGCCA-ATCA
131 CATAACTCAAGGCAAGAAGGGTTATCTGTTAGA--A
* * *
95511 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * * * *
95576 AAGGGCCATCTGCCAAAGACTCC-CGAGTTCGATTACACTCAACTTCGAGGTCATATCATTTACA
66 AAGGGCTATCTGCCAAAGAC-CCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACA
* * *
95640 ACATAGCTCATGGCAAGAAGGG
130 GCATAACTCAAGGCAAGAAGGG
95662 CTATTTGTCA
Statistics
Matches: 438, Mismatches: 39, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
164 304 0.69
165 132 0.30
166 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (164 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
CATAACTCAAGGCAAGAAGGGTTATCTGTTAGAA
Found at i:95576 original size:84 final size:81
Alignment explanation
Indices: 94977--95595 Score: 611
Period size: 81 Copynumber: 7.6 Consensus size: 81
94967 TAAACAAACT
* * * * * *
94977 ATTTGCAGCTTAGCTCAAGGCCAGAAGGGCTACCTGCCACCAAGACCTTCGAGTTCGACTACGCT
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-CACAAAGACCTTCGAGTTCGACTACGCT
95042 CAGCTCCAAGGCACATC
65 CAGCTCCAAGGCACATC
* * * *
95059 ATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGC-CAAAGACCCTT-AAGTTCGATTACACT
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCACAAAGA-CCTTCGAGTTCGACTACGCT
* * *
95122 CAGCTTCAAGGGCATAAC
65 CAGCTCCAA-GGCACATC
* * * * * * * * *
95140 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGAAAAGACCTTTGAGTTCGACTACGC
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-CA-CAAAGACCTTCGAGTTCGACTACGC
95205 TCAGCTCCAAGGCACATC
64 TCAGCTCCAAGGCACATC
* * * * *
95223 ATTTGCAGTATAGCTTAAGTCGAGAAGAGCTATCTGC-CAAAGACCCTT-AAGTTCGATTACACT
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCACAAAGA-CCTTCGAGTTCGACTACGCT
* * *
95286 CAGCTTCAAGGGCATAAC
65 CAGCTCCAA-GGCACATC
* * * * * * * *
95304 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGC
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-CA-CAAAGACCTTCGAGTTCGACTACGC
95369 TCAGCTCCAAGGCACATC
64 TCAGCTCCAAGGCACATC
* ** **
95387 ATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGC-CAAAGACCCCCGAGTTCGGTTACGCTC
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCACAAAGACCTTCGAGTTCGACTACGCTC
* * *
95451 AGCTTCGAGGGCGCATC
66 AGC-TCCAAGGCACATC
* * *
95468 ATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAATCAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-C-A-CAAAGACCTTCGAGTTCGACTACG
*
95533 CTCAGCTCCAAGGCATATC
63 CTCAGCTCCAAGGCACATC
* *
95552 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCCATCTGC-CAAAGAC
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCACAAAGAC
95596 TCCCGAGTTC
Statistics
Matches: 430, Mismatches: 90, Indels: 36
0.77 0.16 0.06
Matches are distributed among these distances:
80 82 0.19
81 120 0.28
82 31 0.07
83 78 0.18
84 93 0.22
85 26 0.06
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (81 bp):
ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCACAAAGACCTTCGAGTTCGACTACGCTC
AGCTCCAAGGCACATC
Found at i:95660 original size:81 final size:79
Alignment explanation
Indices: 94977--95665 Score: 523
Period size: 81 Copynumber: 8.4 Consensus size: 79
94967 TAAACAAACT
* * * * * * *
94977 ATTTGCAGCTTAGCTCAAGGCCAGAAGGGCTACCTGCCACCAAGACCTTCGAGTTCGACTACGCT
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCA--AAGACC-CCGAGTTCGATTACGCT
* * *
95042 CAGCTCCAAGGCACATC
63 CAGCTTCGAGGCATATC
* * ** *
95059 ATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCC-CGAGTTCGATTACGCTCA
* *
95124 GCTTCAAGGGCATAAC
65 GCTTCGA-GGCATATC
* * * * * * ** ** *
95140 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGAAAAGACCTTTGAGTTCGACTACGC
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTG---CCAAAGACC-CCGAGTTCGATTACGC
* * *
95205 TCAGCTCCAAGGCACATC
62 TCAGCTTCGAGGCATATC
* * * ** *
95223 ATTTGCAGTATAGCTTAAGTCGAGAAGAGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCC-CGAGTTCGATTACGCTCA
* *
95288 GCTTCAAGGGCATAAC
65 GCTTCGA-GGCATATC
* * * * * * * ** *
95304 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGC
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTG---CCAAAGACC-CCGAGTTCGATTACGC
* * *
95369 TCAGCTCCAAGGCACATC
62 TCAGCTTCGAGGCATATC
* * *
95387 ATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGGTTACGCTCA
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGA-CCCCGAGTTCGATTACGCTCA
**
95452 GCTTCGAGGGCGCATC
65 GCTTCGA-GGCATATC
* * * *
95468 ATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAATCAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTG-C---CAAAGACC-CCGAGTTCGATTACG
* *
95533 CTCAGCTCCAAGGCATATC
61 CTCAGCTTCGAGGCATATC
* *
95552 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCCATCTGCCAAAGACTCCCGAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGAC-CCCGAGTTCGATTACGCTCA
*
95617 ACTTCGAGGTCATATC
65 GCTTCGAGG-CATATC
* * * * *
95633 ATTTACAACATAGCTCATGGCAAGAAGGGCTAT
1 ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTAT
95666 TTGTCAATAA
Statistics
Matches: 482, Mismatches: 104, Indels: 43
0.77 0.17 0.07
Matches are distributed among these distances:
80 109 0.23
81 144 0.30
82 34 0.07
83 70 0.15
84 98 0.20
85 27 0.06
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (79 bp):
ATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCCGAGTTCGATTACGCTCAG
CTTCGAGGCATATC
Found at i:96392 original size:34 final size:34
Alignment explanation
Indices: 96352--96524 Score: 176
Period size: 34 Copynumber: 4.9 Consensus size: 34
96342 AATATATATA
96352 ATATATAATTTTTAAAATCATTTTGAAAA-ATTAT
1 ATATATAATTTTTAAAA-CATTTTGAAAACATTAT
*
96386 ATATATAATTTTTGAAAACATTTTTGAAAACA-CAT
1 ATATATAATTTTT-AAAACA-TTTTGAAAACATTAT
* *
96421 ATATTATAGTTTTGAAAACATTTTGAAAACATTTAT
1 ATA-TATAATTTTTAAAACATTTTGAAAACA-TTAT
*
96457 ATATTATATAGTTTTTAAAACGTTTTTGAAAAC-TTAT
1 ATA-TATA-A-TTTTTAAAAC-ATTTTGAAAACATTAT
*
96494 ATA-AT-ATTTTTGAAAACATGTTGAAAACATT
1 ATATATAATTTTT-AAAACATTTTGAAAACATT
96525 CGTATATTAT
Statistics
Matches: 119, Mismatches: 9, Indels: 23
0.79 0.06 0.15
Matches are distributed among these distances:
32 14 0.12
33 8 0.07
34 26 0.22
35 26 0.22
36 19 0.16
37 7 0.06
38 9 0.08
39 10 0.08
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (34 bp):
ATATATAATTTTTAAAACATTTTGAAAACATTAT
Found at i:96408 original size:12 final size:12
Alignment explanation
Indices: 96393--96417 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96383 TATATATATA
96393 ATTTTTGAAAAC
1 ATTTTTGAAAAC
96405 ATTTTTGAAAAC
1 ATTTTTGAAAAC
96417 A
1 A
96418 CATATATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
ATTTTTGAAAAC
Found at i:96446 original size:11 final size:11
Alignment explanation
Indices: 96430--96454 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96420 TATATTATAG
96430 TTTTGAAAACA
1 TTTTGAAAACA
96441 TTTTGAAAACA
1 TTTTGAAAACA
96452 TTT
1 TTT
96455 ATATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:96458 original size:108 final size:109
Alignment explanation
Indices: 96321--96591 Score: 308
Period size: 108 Copynumber: 2.5 Consensus size: 109
96311 TAGTTTTTTT
* * * * * *
96321 TTTAAAAAAAACGTTTTAAAAAATATATATAATATATAATTTTTAAAATCATTTTGAAAAATTAT
1 TTTAAGAAAAACATTTTGAAAAATTTATATATTATATAGTTTTTAAAATCATTTTGAAAAATTAT
*
96386 ATATATAATTTTTGAAAACATTTTTGAAAACA-CATATA-T-TATAG
66 ATA-AT-ATTTTTGAAAACA-TGTTGAAAACATCATATATTATATAG
* * *
96430 TTT-TG-AAAACATTTTGAAAACATTTATATATTATATAGTTTTTAAAA-CGTTTTTGAAAACTT
1 TTTAAGAAAAACATTTTGAAAA-ATTTATATATTATATAGTTTTTAAAATC-ATTTTGAAAAATT
*
96492 ATATAATATTTTTGAAAACATGTTGAAAACATTCGTATATTATATAG
64 ATATAATATTTTTGAAAACATGTTGAAAACA-TCATATATTATATAG
96539 TTTAAGAAAAAACATTTTG-AAAATTTATATATTATAT-GTTTTTGAAAAT-ATTT
1 TTTAAG-AAAAACATTTTGAAAAATTTATATATTATATAGTTTTT-AAAATCATTT
96592 ATGTATATAT
Statistics
Matches: 138, Mismatches: 13, Indels: 22
0.80 0.08 0.13
Matches are distributed among these distances:
105 10 0.07
106 13 0.09
107 21 0.15
108 40 0.29
109 20 0.14
110 20 0.14
111 3 0.02
112 11 0.08
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.44
Consensus pattern (109 bp):
TTTAAGAAAAACATTTTGAAAAATTTATATATTATATAGTTTTTAAAATCATTTTGAAAAATTAT
ATAATATTTTTGAAAACATGTTGAAAACATCATATATTATATAG
Found at i:96511 original size:71 final size:74
Alignment explanation
Indices: 96352--96541 Score: 231
Period size: 71 Copynumber: 2.7 Consensus size: 74
96342 AATATATATA
96352 ATATAT-A-ATTTTT-AAAATCATTTTGAAAA-A-TTATATA-TATA-A-TTTTTGAAAACATTT
1 ATATATAATATTTTTGAAAA-CATTTTGAAAACATTTATATATTATATAGTTTTTGAAAACATTT
96409 TTGAAAACAC
65 TTGAAAACAC
* * *
96419 ATATATTATAGTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTT-AAAACGTTTT
1 ATATATAATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTTGAAAACATTTT
96483 TG-AAA-AC
66 TGAAAACAC
* * **
96490 TTATATAATATTTTTGAAAACATGTTGAAAACATTCGTATATTATATAGTTT
1 ATATATAATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTT
96542 AAGAAAAAAC
Statistics
Matches: 107, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
67 6 0.06
68 1 0.01
69 16 0.15
70 5 0.05
71 55 0.51
72 7 0.07
73 12 0.11
74 5 0.05
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (74 bp):
ATATATAATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTTGAAAACATTTT
TGAAAACAC
Found at i:96557 original size:73 final size:70
Alignment explanation
Indices: 96400--96569 Score: 187
Period size: 71 Copynumber: 2.3 Consensus size: 70
96390 ATAATTTTTG
* * * *
96400 AAAACATTTTTGAAAACACATATATTATAGTTTTGAAAACATTTTGAAAACATTTATATATTATA
1 AAAACA-TTTTG-AAA-ACTTATATAATAGTTTTGAAAACATGTTGAAAACATTCATATATTATA
**
96465 TAGTTTTT
63 TAGTTTAA
* * *
96473 AAAACGTTTTTGAAAACTTATATAATATTTTTGAAAACATGTTGAAAACATTCGTATATTATATA
1 AAAAC-ATTTTGAAAACTTATATAATAGTTTTGAAAACATGTTGAAAACATTCATATATTATATA
96538 GTTTAAGAA
65 GTTT---AA
*
96547 AAAACATTTTGAAAATTTATATA
1 AAAACATTTTGAAAACTTATATA
96570 TTATATGTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
71 48 0.59
72 3 0.04
73 26 0.32
74 5 0.06
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.41
Consensus pattern (70 bp):
AAAACATTTTGAAAACTTATATAATAGTTTTGAAAACATGTTGAAAACATTCATATATTATATAG
TTTAA
Found at i:96611 original size:3 final size:3
Alignment explanation
Indices: 96603--96649 Score: 85
Period size: 3 Copynumber: 15.3 Consensus size: 3
96593 TGTATATATA
96603 TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
96649 T
1 T
96650 CATTTTTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:96617 original size:25 final size:22
Alignment explanation
Indices: 96587--96649 Score: 92
Period size: 21 Copynumber: 2.8 Consensus size: 22
96577 TTTTTGAAAA
96587 TATTTATGTATATATATATTATTAT
1 TATTTAT-TAT-TAT-TATTATTAT
96612 TATTTATTATTATTATTATTAT
1 TATTTATTATTATTATTATTAT
96634 TA-TTATTATTATTATT
1 TATTTATTATTATTATT
96650 CATTTTTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.37
22 11 0.29
23 3 0.08
24 3 0.08
25 7 0.18
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TATTTATTATTATTATTATTAT
Found at i:97877 original size:20 final size:20
Alignment explanation
Indices: 97854--97896 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
97844 TTTTCGTTTA
97854 TTTA-ATTTTTCTTCATTT-TT
1 TTTATATTTTT-TT-ATTTGTT
97874 TTTATATTTTTTTATTTGTT
1 TTTATATTTTTTTATTTGTT
97894 TTT
1 TTT
97897 CTATCTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.19
20 11 0.52
21 6 0.29
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTATATTTTTTTATTTGTT
Found at i:97895 original size:19 final size:20
Alignment explanation
Indices: 97854--97895 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
97844 TTTTCGTTTA
*
97854 TTTAATTTTTCTTCATTTTT
1 TTTAATTTTTCTTCATTTGT
97874 TTTATATTTTT-TT-ATTTGT
1 TTTA-ATTTTTCTTCATTTGT
97893 TTT
1 TTT
97896 TCTATCTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 6 0.30
21 6 0.30
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTAATTTTTCTTCATTTGT
Found at i:101686 original size:22 final size:22
Alignment explanation
Indices: 101658--101708 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
101648 TTATATAACG
* *
101658 AAAGTGCTTTAGCACTAATACT
1 AAAGTGCCTTAGCACTAATACA
* *
101680 AAAGTGCCTTAGCATTGATACA
1 AAAGTGCCTTAGCACTAATACA
101702 AAAGTGC
1 AAAGTGC
101709 ATTCACACTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (22 bp):
AAAGTGCCTTAGCACTAATACA
Found at i:101760 original size:22 final size:21
Alignment explanation
Indices: 101658--101762 Score: 61
Period size: 22 Copynumber: 4.8 Consensus size: 21
101648 TTATATAACG
* * *
101658 AAAGTGCTTTAGCACTAATACT
1 AAAGTGC-ATAGCACTGATACA
* *
101680 AAAGTGCCTTAGCATTGATACA
1 AAAGTG-CATAGCACTGATACA
101702 AAAGTGCATTCA-CACTGAGT-CA
1 AAAGTGCA-T-AGCACTGA-TACA
* * *
101724 AAAGTACTTCTGCACTGATACA
1 AAAGTGCAT-AGCACTGATACA
101746 AAAGTGGCATAGCACTG
1 AAAGT-GCATAGCACTG
101763 GGAAAGAGAA
Statistics
Matches: 65, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
21 4 0.06
22 56 0.86
23 5 0.08
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (21 bp):
AAAGTGCATAGCACTGATACA
Found at i:102087 original size:18 final size:19
Alignment explanation
Indices: 102045--102091 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
102035 AGACTGTCAA
* *
102045 TATCAATACTGGCTTTAGGG
1 TATCGATACTGGCCTTA-GG
102065 TATCGATACTGGCCTTA-G
1 TATCGATACTGGCCTTAGG
102083 TATCGATAC
1 TATCGATAC
102092 CAATTTTAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 10 0.40
20 15 0.60
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (19 bp):
TATCGATACTGGCCTTAGG
Found at i:102188 original size:18 final size:20
Alignment explanation
Indices: 102145--102190 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
102135 CCCTAATATA
102145 GAGTATCGATACTCCCCCAAT
1 GAGTATCGATACT-CCCCAAT
102166 G-GTATCGATACT-CCC-AT
1 GAGTATCGATACTCCCCAAT
102183 GAGTATCG
1 GAGTATCG
102191 GTACCAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 3 0.12
18 9 0.38
20 11 0.46
21 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (20 bp):
GAGTATCGATACTCCCCAAT
Found at i:105217 original size:18 final size:18
Alignment explanation
Indices: 105191--105225 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
105181 GGTCATAGTT
*
105191 TCTAGATCCACTTGGAGA
1 TCTAAATCCACTTGGAGA
105209 TCTAAATCCACTTGGAG
1 TCTAAATCCACTTGGAG
105226 CATTCTCCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (18 bp):
TCTAAATCCACTTGGAGA
Found at i:106063 original size:22 final size:22
Alignment explanation
Indices: 106019--106080 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
106009 AATTTAAGAG
* *
106019 CTCGATTAAAACTCTTAACTCAAA
1 CTCGATTCAAACTC--AATTCAAA
* * *
106043 CTTGATTGAAGCTCAATTCAAA
1 CTCGATTCAAACTCAATTCAAA
106065 CTCGATTCAAACTCAA
1 CTCGATTCAAACTCAA
106081 AACTTAAGAG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
22 20 0.65
24 11 0.35
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (22 bp):
CTCGATTCAAACTCAATTCAAA
Found at i:107875 original size:11 final size:10
Alignment explanation
Indices: 107862--107901 Score: 53
Period size: 11 Copynumber: 3.7 Consensus size: 10
107852 CGTTAAGAAC
107862 TCGAGTCGAG
1 TCGAGTCGAG
107872 CTCGAGTCGAG
1 -TCGAGTCGAG
107883 TCCGAGCTCGAG
1 T-CGAG-TCGAG
107895 TCGAGTC
1 TCGAGTC
107902 CATTCGATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 3 0.11
11 18 0.67
12 6 0.22
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (10 bp):
TCGAGTCGAG
Found at i:107881 original size:5 final size:5
Alignment explanation
Indices: 107862--107901 Score: 53
Period size: 5 Copynumber: 7.4 Consensus size: 5
107852 CGTTAAGAAC
107862 TCGAG TCGAG CTCGAG TCGAG TCCGAG CTCGAG TCGAG TC
1 TCGAG TCGAG -TCGAG TCGAG T-CGAG -TCGAG TCGAG TC
107902 CATTCGATCC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 18 0.56
6 13 0.41
7 1 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (5 bp):
TCGAG
Found at i:107890 original size:17 final size:17
Alignment explanation
Indices: 107862--107902 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
107852 CGTTAAGAAC
107862 TCGAGT-CGAGCTCGAG
1 TCGAGTCCGAGCTCGAG
107878 TCGAGTCCGAGCTCGAG
1 TCGAGTCCGAGCTCGAG
107895 TCGAGTCC
1 TCGAGTCC
107903 ATTCGATCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (17 bp):
TCGAGTCCGAGCTCGAG
Found at i:109163 original size:16 final size:16
Alignment explanation
Indices: 109144--109176 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
109134 TAATTATATG
109144 TTTTA-AAAATTTTAAA
1 TTTTATAAAA-TTTAAA
109160 TTTTATAAAATTTAAA
1 TTTTATAAAATTTAAA
109176 T
1 T
109177 ACGTTTATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTATAAAATTTAAA
Found at i:121436 original size:153 final size:153
Alignment explanation
Indices: 121223--121529 Score: 605
Period size: 153 Copynumber: 2.0 Consensus size: 153
121213 TCAAGAGTTC
121223 TAAATAATCTAAAATTATTTTTATCTAAAATGTAGGCCGCTAGAGTTAGCGTTAGGGTGAAAAAC
1 TAAATAATCTAAAATTATTTTTATCTAAAATGTAGGCCGCTAGAGTTAGCGTTAGGGTGAAAAAC
121288 TAATATTTACAAAGAAATAATCGTTATATAACTCACACTCCCCCTCAAACTGGGGAGTAAATATT
66 TAATATTTACAAAGAAATAATCGTTATATAACTCACACTCCCCCTCAAACTGGGGAGTAAATATT
121353 ACAAAAACCCAGCTTGGATGTGA
131 ACAAAAACCCAGCTTGGATGTGA
*
121376 TAAATAATCTAAAATTATTTTTATCTAAAATGTAGGCCGCTAGAGTTAGCGTTAGGGTGAAACAC
1 TAAATAATCTAAAATTATTTTTATCTAAAATGTAGGCCGCTAGAGTTAGCGTTAGGGTGAAAAAC
121441 TAATATTTACAAAGAAATAATCGTTATATAACTCACACTCCCCCTCAAACTGGGGAGTAAATATT
66 TAATATTTACAAAGAAATAATCGTTATATAACTCACACTCCCCCTCAAACTGGGGAGTAAATATT
121506 ACAAAAACCCAGCTTGGATGTGA
131 ACAAAAACCCAGCTTGGATGTGA
121529 T
1 T
121530 TTCGTCGAAA
Statistics
Matches: 153, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 153 1.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.29
Consensus pattern (153 bp):
TAAATAATCTAAAATTATTTTTATCTAAAATGTAGGCCGCTAGAGTTAGCGTTAGGGTGAAAAAC
TAATATTTACAAAGAAATAATCGTTATATAACTCACACTCCCCCTCAAACTGGGGAGTAAATATT
ACAAAAACCCAGCTTGGATGTGA
Found at i:124112 original size:404 final size:405
Alignment explanation
Indices: 123331--124126 Score: 1335
Period size: 404 Copynumber: 2.0 Consensus size: 405
123321 AGCTTGTGTT
*
123331 TGAGGAGAATTCAACGAGTTTATGGTTTTTGAAGGTCTATATGGCCTTCAGGATCAGAAGTGGCA
1 TGAGGAGAATTCAACAAGTTTATGG--TTTGAAGGTCTATATGGCCTTCAGGATCAGAAGTGGCA
*
123396 GTGGTGTTAAGTATTCGTTGAGTTTCGGTAGTTCCAGAAGGAAATAAGGTGACTAGTAGTTTAAT
64 GTGATGTTAAGTATTCGTTGAGTTTCGGTAGTTCCAGAAGGAAATAAGGTGACTAGTAGTTTAAT
* * * *
123461 ATTAACCGGAAAAACCTGAAATTCATACTTACTGTCCCCCAGAATTTCAGACTTAGAGAAAAAAG
129 ATTAACCGAAAAAACCTGAAATTCACACTTACTCTCCCCAAGAATTTCAGACTTAGAGAAAAAAG
* * *
123526 GTTTATGTTCAAGGAAGGTAACATTCATTGAATAAAAAACTTTCTTAGTAGAAGGAGAGTAACAC
194 GTTTATGTTCAAGGAAGGTAACATCCATTGAATAAAAAACTTTATTAGTAAAAGGAGAGTAACAC
* * *
123591 TTATAACCCTTTTGAAGATAACAGTATCCAACGAAGACACATCGGATTGTCTTTGGATCAAGCTT
259 CTATAACCCTTTTGAAGAGAACAGTACCCAACGAAGACACATCGGATTGTCTTTGGATCAAGCTT
123656 AGACCTAGAGTTGGTATGATCATGAAAAAAAGCAGTACAACCAAAGATACGAAGAGGAACACTAG
324 AGACCTAGAGTTGGTATGATCATGAAAAAAAGCAGTACAACCAAAGATACGAAGAGGAACACTAG
123721 GAAATAATGGTTGAAAA
389 GAAATAATGGTTGAAAA
* *
123738 TGAGGAGAATTCAACAAGTTTATGG-TTGTAGGTCTATTTGGCCTTCAGGATCAGAAGTGGCAGT
1 TGAGGAGAATTCAACAAGTTTATGGTTTGAAGGTCTATATGGCCTTCAGGATCAGAAGTGGCAGT
* * *
123802 GATGTTAAGTGGTT-GTTGAGTTTCGGTAGTTTCAGAAGTAAATAAGGTGACTAGTAGTTTAATA
66 GATGTTAAGT-ATTCGTTGAGTTTCGGTAGTTCCAGAAGGAAATAAGGTGACTAGTAGTTTAATA
*
123866 TTAACCGAAAAAACTTGAAATTCACACTTACTCTCCCCAAGAATTTCAGACTTAGAGAAAAAAGG
130 TTAACCGAAAAAACCTGAAATTCACACTTACTCTCCCCAAGAATTTCAGACTTAGAGAAAAAAGG
* * *
123931 TTTTTGTTCAAGGAAGGTAACGTCCATTGAATAGAAAACTTTATTAGTAAAAGGAGAGTAACACC
195 TTTATGTTCAAGGAAGGTAACATCCATTGAATAAAAAACTTTATTAGTAAAAGGAGAGTAACACC
*
123996 TATAACCCTTTTGAAGAGAAGAGTACCCAACGAAGACACATCGGATTGTCTTTGGATCAAGCTTA
260 TATAACCCTTTTGAAGAGAACAGTACCCAACGAAGACACATCGGATTGTCTTTGGATCAAGCTTA
* *
124061 GACCTAGAGTTGGTATGATCATGAACAAAAGCAGTACAACCAAAGATACGAAGAGGAACATTAGG
325 GACCTAGAGTTGGTATGATCATGAAAAAAAGCAGTACAACCAAAGATACGAAGAGGAACACTAGG
124126 A
390 A
124127 GTTTTTTTTT
Statistics
Matches: 364, Mismatches: 24, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
404 338 0.93
405 2 0.01
407 24 0.07
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (405 bp):
TGAGGAGAATTCAACAAGTTTATGGTTTGAAGGTCTATATGGCCTTCAGGATCAGAAGTGGCAGT
GATGTTAAGTATTCGTTGAGTTTCGGTAGTTCCAGAAGGAAATAAGGTGACTAGTAGTTTAATAT
TAACCGAAAAAACCTGAAATTCACACTTACTCTCCCCAAGAATTTCAGACTTAGAGAAAAAAGGT
TTATGTTCAAGGAAGGTAACATCCATTGAATAAAAAACTTTATTAGTAAAAGGAGAGTAACACCT
ATAACCCTTTTGAAGAGAACAGTACCCAACGAAGACACATCGGATTGTCTTTGGATCAAGCTTAG
ACCTAGAGTTGGTATGATCATGAAAAAAAGCAGTACAACCAAAGATACGAAGAGGAACACTAGGA
AATAATGGTTGAAAA
Found at i:130593 original size:39 final size:39
Alignment explanation
Indices: 130548--130623 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 39
130538 AGTTAAAAGA
130548 AATAATTTAA-ATTGTTGGGGTGAAATAAACTAAGAAATT
1 AATAATTTAATA-TGTTGGGGTGAAATAAACTAAGAAATT
* * **
130587 AATAATTTAGTATGTTGTGGTGAAATAATTTAAGAAA
1 AATAATTTAATATGTTGGGGTGAAATAAACTAAGAAA
130624 ACAAAAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 31 0.97
40 1 0.03
ACGTcount: A:0.45, C:0.01, G:0.18, T:0.36
Consensus pattern (39 bp):
AATAATTTAATATGTTGGGGTGAAATAAACTAAGAAATT
Found at i:130641 original size:39 final size:39
Alignment explanation
Indices: 130560--130655 Score: 95
Period size: 39 Copynumber: 2.5 Consensus size: 39
130550 TAATTTAAAT
** * * *
130560 TGTTGGGGTGAAATAAACTAAGAAATTAATAATTTAGTA
1 TGTTGGGGTGAAATAAACTAAGAAAACAAAAACTTAGAA
* **
130599 TGTTGTGGTGAAATAATTTAAGAAAACAAAAACTTAGAA
1 TGTTGGGGTGAAATAAACTAAGAAAACAAAAACTTAGAA
* *
130638 TGTTAGAGTGAAA-AAACT
1 TGTTGGGGTGAAATAAACT
130656 TTAGAATTAG
Statistics
Matches: 44, Mismatches: 13, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
38 3 0.07
39 41 0.93
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (39 bp):
TGTTGGGGTGAAATAAACTAAGAAAACAAAAACTTAGAA
Found at i:130665 original size:22 final size:24
Alignment explanation
Indices: 130626--130675 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
130616 TTAAGAAAAC
130626 AAAAACTTAGAATGTTA-GAGT-GA
1 AAAAACTTAGAA-GTTAGGAGTAGA
130649 AAAAACTTTAGAA-TTAGGAGTAGA
1 AAAAAC-TTAGAAGTTAGGAGTAGA
130673 AAA
1 AAA
130676 TCTGATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.12
23 10 0.42
24 11 0.46
ACGTcount: A:0.52, C:0.04, G:0.20, T:0.24
Consensus pattern (24 bp):
AAAAACTTAGAAGTTAGGAGTAGA
Found at i:134507 original size:12 final size:12
Alignment explanation
Indices: 134490--134514 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
134480 CATTTCATCG
134490 AACAATTTCCCT
1 AACAATTTCCCT
134502 AACAATTTCCCT
1 AACAATTTCCCT
134514 A
1 A
134515 CATTGGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (12 bp):
AACAATTTCCCT
Found at i:134609 original size:15 final size:15
Alignment explanation
Indices: 134589--134618 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
134579 GTTCAACCGT
134589 TTTTTTTATTATGCG
1 TTTTTTTATTATGCG
134604 TTTTTTTATTATGCG
1 TTTTTTTATTATGCG
134619 CGAATGGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67
Consensus pattern (15 bp):
TTTTTTTATTATGCG
Found at i:134909 original size:2 final size:2
Alignment explanation
Indices: 134902--134940 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
134892 GCGATGCTTT
134902 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
134941 TATTTACATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:144639 original size:84 final size:84
Alignment explanation
Indices: 144547--144968 Score: 664
Period size: 84 Copynumber: 5.0 Consensus size: 84
144537 AATTGTGCCC
* * *
144547 ACCAAAGACCTTCGAGTTCAACTACGCTCAGCTCAAAGGCACAACATTTGCAGCATAGCTTAAGT
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGT
*
144612 CGAGAAGGCCTATCTACCA
66 CGAGAAGGGCTATCTACCA
* *
144631 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGT
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGT
* * **
144696 CGATAAGGGTTATCTGTCA
66 CGAGAAGGGCTATCTACCA
*
144715 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTTGCAGCATAGCTTAAGT
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGT
*
144780 CGAGAATGGCTATCTACCA
66 CGAGAAGGGCTATCTACCA
* * *
144799 ACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAACATAACTTAAG
1 ACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAG
* *
144864 TCGAGAAGGGTTATCTTCCA
65 TCGAGAAGGGCTATCTACCA
144884 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGT
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGT
* *
144949 CAAGAAGGGCTATCTGCCA
66 CGAGAAGGGCTATCTACCA
144968 A
1 A
144969 AGATCATCGA
Statistics
Matches: 306, Mismatches: 31, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
84 229 0.75
85 77 0.25
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (84 bp):
ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGT
CGAGAAGGGCTATCTACCA
Found at i:144889 original size:169 final size:167
Alignment explanation
Indices: 144547--145066 Score: 727
Period size: 169 Copynumber: 3.1 Consensus size: 167
144537 AATTGTGCCC
* *
144547 ACCAAAGACCTTCGAGTTCAACTACGCTCAGC-TCAAAGGCACAACATTTGCAGCATAGCTTAAG
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTC-AAGGCACATCATTTGCAGCATAGCTTAAG
144611 TCGAGAAGGCCTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
65 TCGAGAAGG-CTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
* *
144676 ATTTGCAGCATAACTTAAGTCGATAAGGGTTATCTGTCA
129 ATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGTCA
144715 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTTGCAGCATAGCTTAAGT
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTTGCAGCATAGCTTAAGT
144780 CGAGAATGGCTATCTACCAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
66 CGAGAA-GGCTATCTACCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
144845 ATTTGCAACATAACTTAAGTCGAGAAGGGTTATCT-TCCA
129 ATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGT-CA
*
144884 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGT
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTTGCAGCATAGCTTAAGT
* * * * * * * * * *
144949 CAAGAAGGGCTATCT----GCCAAAGATCATCGAGTTCGATTACCCCCAGCTTCGAGGGCACAT-
66 CGAGAA-GGCTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATC
* * * *
145009 AATT--AACAATAACTCAAGGCTAGAAGGGTTATCTGTC-
129 ATTTGCAAC-ATAACTTAAGTCGAGAAGGGTTATCTGTCA
145046 ACCAAAGACCTTCGAGTTCGA
1 ACCAAAGACCTTCGAGTTCGA
145067 TTCCATTCAG
Statistics
Matches: 325, Mismatches: 20, Indels: 20
0.89 0.05 0.05
Matches are distributed among these distances:
162 24 0.07
163 24 0.07
164 28 0.09
165 11 0.03
168 80 0.25
169 158 0.49
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (167 bp):
ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTTGCAGCATAGCTTAAGT
CGAGAAGGCTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCAT
TTGCAACATAACTTAAGTCGAGAAGGGTTATCTGTCA
Found at i:145534 original size:33 final size:33
Alignment explanation
Indices: 145497--145572 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
145487 TAAATCAACA
*
145497 TATTTGAGTCCTATTGAAATACTAAAACCAAAG
1 TATTTGAGTCCTATTGAAACACTAAAACCAAAG
*
145530 TATTTGAGTCCTATTGAAACACTAAAACCGAAG
1 TATTTGAGTCCTATTGAAACACTAAAACCAAAG
*
145563 CATTTTGAGT
1 TA-TTTGAGT
145573 TCAAGTAGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 32 0.82
34 7 0.18
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (33 bp):
TATTTGAGTCCTATTGAAACACTAAAACCAAAG
Found at i:146360 original size:2 final size:2
Alignment explanation
Indices: 146353--146435 Score: 57
Period size: 2 Copynumber: 41.5 Consensus size: 2
146343 GGTTCTGATA
* * * *
146353 AT AT AT AT AT AT AT AT AT AT AT A- AT ACC AT AC AC GT ACT AT GAT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A-T AT -AT
*
146397 AT -T AG A- AT AT AT AT AT AT AT AT AT AT AT AT -T AT AGT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A
146436 AAAATGACAA
Statistics
Matches: 66, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
1 4 0.06
2 55 0.83
3 7 0.11
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (2 bp):
AT
Found at i:148790 original size:3 final size:3
Alignment explanation
Indices: 148773--148813 Score: 66
Period size: 3 Copynumber: 13.7 Consensus size: 3
148763 TGGACCTGCA
148773 AAT AA- AAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
148814 AACCCATATG
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:149286 original size:21 final size:22
Alignment explanation
Indices: 149244--149286 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
149234 TCCGCCATGT
**
149244 TATCAACCACTGTGAATTGTCA
1 TATCAACCACTGTGAACCGTCA
*
149266 TATCAA-CACTGTGGACCGTCA
1 TATCAACCACTGTGAACCGTCA
149287 CGTTAGCACC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (22 bp):
TATCAACCACTGTGAACCGTCA
Found at i:150476 original size:17 final size:17
Alignment explanation
Indices: 150444--150477 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
150434 TTACCCTATT
*
150444 TTTTATAACTACTTTTA
1 TTTTATAACTAATTTTA
*
150461 TTTTATAATTAATTTTA
1 TTTTATAACTAATTTTA
150478 AACTTATAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTATAACTAATTTTA
Done.