genome.fa.s4395.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004395.1 Hibiscus syriacus cultivar Beakdansim tig00009639_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126817

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411--1442	16	2.0	16	93	0	55	40	0	18	40	1.51
4053--4101	23	2.1	23	84	0	62	44	6	14	34	1.70
6751--6791	19	2.2	19	86	0	55	48	0	31	19	1.49
9811--9859	23	2.1	23	84	0	62	44	6	14	34	1.70
10284--10310	2	13.5	2	100	0	54	48	0	0	51	1.00
11021--11089	23	3.0	23	93	0	120	14	24	26	34	1.94
12687--12749	11	5.9	11	69	14	51	58	1	1	38	1.17
12859--12918	7	8.9	7	76	5	52	48	31	1	18	1.58
15297--15405	11	9.5	11	73	13	85	31	20	22	25	1.98
15297--15381	23	3.7	23	92	4	136	34	17	22	25	1.96
15304--15381	12	6.8	12	77	12	83	35	17	20	25	1.95
15506--15568	26	2.4	27	94	2	110	22	23	28	25	1.99
17345--17640	109	2.7	110	88	4	452	42	13	11	32	1.80
17593--17669	29	2.7	29	87	0	100	42	11	11	33	1.78
17484--17815	139	2.4	136	83	4	413	40	11	11	36	1.77
18421--18479	29	2.0	30	83	9	77	27	5	27	40	1.77
19193--19284	32	2.9	32	81	3	105	27	16	17	39	1.91
23037--23090	27	2.0	28	85	10	76	51	0	7	40	1.30
24856--24894	20	2.0	20	84	0	51	56	2	5	35	1.35
26140--26565	106	4.0	106	92	0	708	21	18	24	35	1.95
27412--27488	36	2.1	38	90	4	122	36	15	24	23	1.94
27974--28010	18	2.0	19	89	5	58	40	35	8	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29062--29099	11	3.7	10	83	16	51	5	13	2	78	1.02
29037--29104	22	3.2	21	83	10	77	4	16	4	75	1.13
29050--29112	18	3.5	17	76	18	65	3	14	4	77	1.05
32570--32616	10	4.7	10	82	17	62	78	0	2	19	0.85
32576--32615	21	1.9	22	90	10	66	77	0	2	20	0.88
33665--33715	27	1.9	27	88	4	77	68	0	11	19	1.20
33661--33720	26	2.3	25	80	8	75	68	0	10	21	1.19
33781--33814	9	3.8	9	92	0	50	70	0	26	2	1.01
35227--35303	3	25.7	3	76	5	75	40	0	0	59	0.97
35233--35301	27	2.5	28	88	4	97	43	0	0	56	0.99
35310--35364	26	2.1	26	89	0	83	40	32	18	9	1.82
36557--36594	12	3.2	12	81	3	51	28	2	2	65	1.19
36602--36633	2	16.0	2	93	0	55	53	0	0	46	1.00
36730--36788	31	1.9	31	85	0	82	42	0	1	55	1.09
37464--37515	20	2.6	21	76	11	56	26	7	0	65	1.20
39553--39593	21	2.0	21	95	0	73	17	9	12	60	1.57
39555--39602	21	2.3	21	85	0	60	16	10	8	64	1.48
46027--46181	54	2.9	54	93	0	256	37	16	23	23	1.93
47252--48117	76	11.4	76	97	0	1516	22	21	21	35	1.96
48271--48344	3	24.7	3	75	5	69	40	0	0	59	0.97
48277--48339	24	2.6	25	87	5	85	44	0	0	55	0.99
48351--48405	26	2.1	26	89	0	83	40	32	18	9	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49597--49634	12	3.2	12	81	3	51	28	2	2	65	1.19
49642--49686	2	22.5	2	100	0	90	51	0	0	48	1.00
49919--49953	17	2.0	18	88	5	54	40	5	8	45	1.58
51170--51220	3	17.0	3	84	8	59	41	0	0	58	0.98
53420--53467	24	2.0	23	88	4	69	35	2	2	60	1.20
56763--56794	15	2.1	15	94	0	55	25	18	9	46	1.79
64127--64161	9	4.0	9	85	7	54	80	0	20	0	0.72
64118--64161	18	2.4	18	88	11	63	77	0	22	0	0.77
65578--65800	92	2.4	92	97	0	419	30	14	21	33	1.94
65704--66133	115	3.7	115	98	0	817	32	14	21	31	1.93
66960--67492	124	4.3	123	86	3	725	39	15	19	24	1.91
66858--67492	247	2.6	245	89	5	929	39	14	19	25	1.90
67641--67695	3	18.3	3	85	7	76	40	0	0	60	0.97
67637--67707	21	3.4	21	82	0	79	46	0	0	53	1.00
68769--68816	21	2.4	19	79	6	51	37	2	4	56	1.30
69154--69328	89	2.0	88	88	1	260	41	9	11	37	1.74
73757--73838	37	2.2	37	86	0	110	31	18	21	28	1.97
75440--75484	20	2.2	20	100	0	90	42	35	8	13	1.75
77170--77475	150	2.0	150	98	0	585	26	17	21	34	1.95
84224--84540	150	2.1	150	96	1	582	26	17	21	34	1.96
84508--84552	23	2.0	23	86	0	63	20	26	26	26	1.99
86434--89001	4	644.8	4	98	1	4890	24	0	25	49	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90738--90766	15	1.9	15	100	0	58	10	20	62	6	1.50
99414--99458	22	2.0	24	91	8	76	33	13	15	37	1.86
101077--101208	51	2.6	50	84	1	147	16	28	32	21	1.96
101320--101358	20	2.0	19	90	5	60	33	23	0	43	1.54
101483--101703	110	2.0	111	91	0	363	36	8	8	46	1.65
107354--107467	49	2.4	47	82	5	140	28	21	21	28	1.99
107479--107597	50	2.4	50	84	2	150	20	31	31	15	1.94
108945--108986	3	14.0	3	89	0	66	66	0	28	4	1.12
108946--108986	15	2.7	15	100	0	82	68	0	26	4	1.10
112522--112573	21	2.5	21	81	3	61	38	19	25	17	1.93
112562--112675	20	5.7	20	81	6	104	31	24	18	25	1.97
112559--112675	61	1.9	61	83	0	153	33	23	17	24	1.97
113218--113399	19	9.9	19	74	14	150	13	21	20	43	1.86
113218--113399	33	5.0	38	77	13	150	13	21	20	43	1.86
113387--113413	14	1.9	14	100	0	54	18	14	14	51	1.76
115417--115539	42	2.9	42	80	2	122	22	36	17	22	1.95
115473--115539	21	3.2	21	66	6	55	23	35	20	19	1.95
116895--116930	14	2.6	14	95	0	63	30	0	25	44	1.54
117109--117193	19	4.7	19	69	15	63	14	23	21	41	1.89
119649--119702	24	2.2	24	86	0	72	40	20	16	22	1.91
120761--120818	20	2.9	20	94	0	98	37	22	22	17	1.93
120824--120894	33	2.2	33	81	0	79	21	19	19	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120845--120895	14	3.3	14	76	23	57	11	21	19	47	1.81
120837--120915	33	2.4	34	86	2	106	15	22	18	43	1.88
121003--121039	14	2.6	14	86	0	56	48	21	0	29	1.50
122904--122970	19	3.5	19	83	4	89	37	23	23	14	1.93
122959--123016	14	3.9	14	79	16	71	48	25	17	8	1.75
122943--123021	32	2.4	33	95	2	142	46	24	18	10	1.80
123050--123108	14	3.9	14	79	16	73	10	16	22	50	1.75
123033--123123	32	2.8	33	91	3	148	12	17	20	49	1.78
123109--123151	20	2.2	20	87	4	61	18	23	20	37	1.94
123117--123162	20	2.3	20	88	0	65	15	21	26	36	1.93
123640--123684	18	2.5	18	88	0	72	13	15	44	26	1.83
124998--125035	20	1.9	20	88	0	58	50	21	15	13	1.78
125302--125343	22	1.9	22	95	0	75	16	16	45	21	1.86
125530--125622	20	4.7	20	79	0	87	23	17	24	34	1.96
125510--125623	20	5.7	20	77	3	86	23	16	23	35	1.95
125550--125626	40	1.9	40	83	0	100	22	15	22	40	1.91
125612--125704	20	4.5	21	75	4	91	17	23	18	40	1.90
125612--125704	41	2.3	41	98	0	177	17	23	18	40	1.90

Tables:   1

The End!