Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004396.1 Hibiscus syriacus cultivar Beakdansim tig00009640_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127284

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1911--2228
55
5.9
55
90
4
506
37
16
10
35
1.83
1911--2228
109
2.9
110
90
5
506
37
16
10
35
1.83
2570--2639
22
3.3
22
68
22
58
28
21
12
37
1.90
9051--9086
18
2.0
18
89
10
56
36
0
0
63
0.94
15915--15940
2
13.0
2
100
0
52
50
0
0
50
1.00
16359--16399
21
1.9
22
85
5
57
63
0
0
36
0.95
20195--20239
23
2.0
23
86
0
63
26
26
26
20
1.99
20347--20422
25
3.0
25
96
1
134
31
23
25
19
1.98
20961--21003
21
2.0
21
86
0
59
16
25
27
30
1.97
27027--27071
23
2.0
23
81
0
54
28
26
24
20
1.99
27181--27256
25
3.0
25
94
1
134
31
23
25
19
1.98
27793--27835
21
2.0
21
86
0
59
16
25
27
30
1.97
28095--28134
17
2.4
17
100
0
80
50
27
0
22
1.50
28646--28687
21
2.0
22
85
4
59
61
0
0
38
0.96
31974--32014
21
1.9
22
85
5
57
63
0
0
36
0.95
35305--35345
21
1.9
22
85
5
57
63
0
0
36
0.95
38610--38650
21
1.9
22
85
5
57
63
0
0
36
0.95
39189--39251
28
2.2
29
80
11
76
52
11
6
30
1.61
42659--42715
22
2.7
22
78
5
55
22
26
26
24
2.00
45493--45543
22
2.3
22
96
0
93
25
17
23
33
1.96
46775--46813
14
2.9
14
81
18
55
64
0
0
35
0.94
48076--48167
45
2.0
45
100
0
184
34
19
20
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49034--49066
16
1.9
17
88
11
50
36
0
3
60
1.12
61904--61946
21
2.0
21
86
0
59
30
27
25
16
1.97
61926--62078
68
2.2
68
87
4
211
30
28
27
14
1.95
62381--62452
29
2.5
29
90
0
108
38
11
12
37
1.79
62746--62812
22
3.0
22
95
0
125
19
26
25
28
1.99
68847--68889
21
2.0
21
86
0
59
30
27
25
16
1.97
68869--69017
67
2.2
66
87
5
203
30
27
26
14
1.95
69321--69391
28
2.5
29
90
2
108
38
11
12
38
1.79
69405--69482
30
2.6
29
80
8
84
34
8
20
35
1.84
69684--69728
22
2.0
22
100
0
90
20
26
26
26
1.99
69684--69736
22
2.4
22
93
0
79
20
24
24
30
1.99
75769--75820
27
1.9
27
84
0
68
25
13
23
38
1.91
84678--84719
2
21.0
2
100
0
84
50
0
0
50
1.00
88231--88256
6
4.3
6
100
0
52
0
34
15
50
1.45
88723--88798
3
25.7
3
91
2
127
67
0
1
31
0.99
88953--89600
118
5.5
118
95
2
1096
28
20
15
35
1.93
90316--90517
50
4.0
50
98
0
368
38
24
13
23
1.91
91650--91722
12
6.1
12
76
19
73
2
17
0
79
0.85
91650--91717
5
13.6
5
71
22
54
2
17
0
79
0.86
91650--91722
21
3.6
21
83
10
91
2
17
0
79
0.85
91649--91718
26
2.5
28
76
21
76
2
18
0
78
0.87
104000--104025
6
4.3
6
100
0
52
0
34
15
50
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104490--104568
3
26.7
3
92
2
133
67
0
1
31
0.99
105564--105594
14
2.2
14
94
0
53
61
0
38
0
0.96
111389--111423
13
2.7
13
90
0
61
37
28
5
28
1.80
116374--116409
14
2.6
14
100
0
72
36
36
8
19
1.82
123872--124149
30
9.4
30
91
3
440
33
24
18
24
1.97
125294--125415
64
1.9
63
81
8
149
25
21
18
35
1.95

Tables:   1

The End!