genome.fa.s4398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004398.1 Hibiscus syriacus cultivar Beakdansim tig00009644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93313

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667--719	21	2.5	20	82	8	61	22	26	16	33	1.96
1236--1308	34	2.1	34	94	0	128	53	6	5	34	1.51
1683--2720	138	7.7	138	83	6	1271	32	22	21	23	1.98
1683--2814	264	4.3	264	84	6	1343	33	21	21	23	1.97
7462--7491	3	10.0	3	100	0	60	33	0	0	66	0.92
12307--12545	6	39.8	6	97	0	388	20	16	12	50	1.77
16403--16490	30	2.9	30	81	5	88	45	4	15	34	1.67
23524--23593	31	2.3	31	87	0	104	17	8	15	58	1.61
26114--26160	25	1.9	24	82	4	58	44	10	2	42	1.51
26152--26353	105	1.9	105	93	0	350	43	13	2	40	1.60
26253--26862	149	4.1	148	90	2	952	43	12	3	39	1.61
26253--26862	297	2.0	299	91	2	985	43	12	3	39	1.61
26763--26964	101	2.0	102	95	0	361	41	13	3	42	1.61
26021--27349	547	2.4	547	89	3	1932	43	13	3	39	1.62
26615--27113	250	2.0	250	93	0	856	42	13	4	40	1.62
26864--27349	149	3.3	149	94	0	846	42	13	4	40	1.64
26466--27262	399	2.0	399	93	0	1362	43	12	4	40	1.62
27216--27473	129	2.0	129	92	1	428	42	13	3	40	1.60
26952--27405	149	3.0	144	76	14	411	42	13	3	39	1.62
27380--27581	101	2.0	103	88	3	300	44	11	2	41	1.56
27481--27839	149	2.4	150	91	1	569	44	11	5	39	1.62
28146--28222	38	2.0	38	94	0	136	29	22	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28527--28819	102	2.9	101	79	9	324	30	2	16	50	1.58
31144--31388	27	8.7	27	80	9	213	37	14	3	43	1.63
31282--31348	9	7.3	10	75	16	56	37	11	2	47	1.56
31282--31389	18	6.0	18	72	13	71	36	12	3	47	1.60
31157--31373	117	1.9	117	92	0	362	38	14	3	43	1.63
33057--33167	38	2.9	38	86	2	143	38	20	9	30	1.85
33353--33400	13	3.8	13	72	5	53	25	6	6	62	1.42
33358--33416	25	2.4	25	97	0	109	32	3	3	61	1.29
33572--33940	203	1.8	204	88	1	562	37	16	6	39	1.75
38434--38467	14	2.2	16	90	10	54	76	0	5	17	0.98
48461--48503	20	2.0	20	86	8	59	25	32	2	39	1.69
54652--54830	68	2.6	68	87	1	261	32	25	13	29	1.93
55058--55175	58	2.0	58	83	6	150	33	17	14	34	1.90
55154--55814	54	12.3	54	90	0	957	31	19	20	28	1.97
56144--56349	95	2.2	96	84	4	265	26	25	15	33	1.95
62179--62238	20	2.8	22	78	9	70	16	25	33	25	1.96
69562--69990	149	2.9	144	82	7	504	44	12	3	39	1.59
69361--69838	239	2.0	238	93	1	823	42	13	4	39	1.64
75065--75104	20	2.0	20	100	0	80	45	15	10	30	1.78
77413--77529	42	2.8	41	89	2	171	19	16	17	47	1.83
77884--77928	23	2.0	23	86	0	63	53	2	2	42	1.25
77995--78056	30	2.1	30	82	11	74	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78018--78116	49	2.0	50	80	9	114	50	0	2	47	1.12
78241--78272	14	2.3	14	94	0	55	46	15	9	28	1.77
78284--78351	36	1.9	35	85	8	93	35	11	2	50	1.54
79915--79986	31	2.3	31	79	15	78	55	1	1	41	1.17
85288--85341	6	9.0	6	100	0	108	33	0	0	66	0.92
90627--90805	3	60.7	3	73	19	112	27	2	2	67	1.14
90749--90839	32	2.9	31	77	19	82	26	6	0	67	1.15
90784--90839	23	2.2	24	79	20	62	25	8	0	66	1.21
90967--91064	37	2.8	36	71	22	91	10	7	5	77	1.11
91023--91063	17	2.4	18	80	12	59	9	4	4	80	1.00
91014--91074	27	2.2	28	82	8	72	14	3	3	78	1.00

Tables:   1

The End!