Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004399.1 Hibiscus syriacus cultivar Beakdansim tig00009647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100870

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4513--4550
19
2.0
19
85
10
51
0
18
5
76
0.97
18718--18757
17
2.3
18
86
8
64
22
25
25
27
2.00
18741--18774
12
2.8
12
95
0
59
32
17
14
35
1.91
18898--18983
41
2.1
41
88
0
127
24
16
25
33
1.95
20217--20708
133
3.7
133
87
2
684
31
18
20
30
1.96
20280--20708
44
9.7
44
68
6
181
30
18
20
31
1.96
20677--21053
33
11.3
33
84
4
470
23
20
18
37
1.94
20676--21053
67
5.6
67
86
4
494
23
20
18
37
1.94
26672--26712
21
2.0
21
85
0
55
29
29
24
17
1.97
28191--28494
149
2.0
149
98
0
590
27
16
21
34
1.95
28473--28517
23
2.0
23
86
0
63
20
24
28
26
1.99
40660--40741
15
5.0
15
73
16
74
37
6
15
40
1.73
40660--40765
52
2.0
52
100
0
212
36
5
16
40
1.73
43337--43361
2
12.5
2
100
0
50
48
0
0
52
1.00
47660--47737
39
2.0
39
82
5
95
29
28
25
16
1.97
47814--47870
21
2.8
21
76
10
55
63
3
17
15
1.45
54439--54466
1
28.0
1
100
0
56
100
0
0
0
0.00
55264--55877
105
5.8
105
96
0
1095
33
25
18
22
1.97
59265--59299
13
2.7
13
90
0
52
31
20
17
31
1.95
59311--59561
85
3.0
85
91
3
384
30
21
16
31
1.96
61042--61072
12
2.6
12
94
0
53
70
9
6
12
1.31
61565--61681
39
3.0
38
73
13
103
3
32
9
54
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65329--65372
15
2.9
15
93
0
70
11
20
13
54
1.69
83605--83686
41
2.0
41
100
0
164
36
19
12
31
1.89
84179--84223
19
2.4
19
96
0
81
24
15
20
40
1.91
85601--85820
117
1.9
120
86
2
320
36
5
26
30
1.79
88943--88984
17
2.5
17
92
7
68
11
28
30
28
1.92
90114--90149
18
2.0
18
88
0
54
44
5
19
30
1.73
90212--90273
26
2.4
26
88
0
97
38
11
17
32
1.85
93771--93803
17
1.9
17
93
0
57
39
6
12
42
1.67

Tables:   1

The End!