genome.fa.s44.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000044.1 Hibiscus syriacus cultivar Beakdansim tig00000070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68478

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11640--11677	5	7.6	5	100	0	76	81	0	18	0	0.69
16008--16047	14	2.8	14	84	3	53	75	0	0	25	0.81
16019--16056	13	2.8	14	84	8	51	73	0	0	26	0.83
17049--17082	17	1.9	18	88	5	52	35	0	0	64	0.94
18309--18371	11	5.9	11	69	14	51	57	3	1	38	1.24
18493--18538	14	3.3	14	93	0	74	50	28	2	19	1.60
19150--19181	16	2.0	16	93	0	55	53	18	0	28	1.45
22648--22716	24	2.8	26	83	12	85	31	24	5	37	1.79
22681--22716	12	3.0	12	91	0	63	36	25	5	33	1.79
23021--23241	64	3.5	63	84	3	246	27	18	19	33	1.96
29573--29608	12	3.0	12	91	0	63	36	25	5	33	1.79
29918--30134	64	3.4	64	83	3	224	27	17	20	34	1.95
31254--31291	19	2.0	19	89	0	58	23	18	10	47	1.79
31902--31966	33	1.9	34	87	3	96	41	21	6	30	1.77
35388--35422	18	1.9	18	88	11	54	68	2	2	25	1.17
35597--35635	20	2.0	20	89	0	60	20	28	17	33	1.96
41677--41717	8	5.2	8	82	5	57	34	0	29	36	1.58
41788--42543	128	5.9	128	95	1	1304	22	24	21	32	1.98
42903--43000	31	3.0	34	82	8	130	39	4	4	52	1.40
43522--43612	21	4.3	20	87	4	101	20	27	32	18	1.96
43519--43612	42	2.2	42	86	3	127	22	27	31	18	1.97
45198--45256	28	2.1	28	81	6	66	59	5	0	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49799--49837	18	2.2	18	100	0	78	23	5	23	48	1.70
51772--51912	22	6.4	22	86	4	180	17	23	30	29	1.97
51769--51931	44	3.8	44	89	4	237	17	23	31	28	1.97
51781--51911	66	2.0	66	93	0	226	16	22	31	29	1.96
51786--51932	22	6.9	20	87	6	138	17	22	31	27	1.97
52768--52831	23	2.8	23	95	0	110	32	26	26	14	1.94
54625--54658	17	2.1	17	88	5	52	32	20	0	47	1.51
60125--62039	640	3.0	639	95	1	3441	36	16	15	31	1.90
62723--62753	3	10.3	3	100	0	62	35	0	0	64	0.94
63071--63129	19	3.1	19	90	0	82	30	45	13	10	1.76
68396--68448	22	2.5	22	90	3	90	28	9	13	49	1.73

Tables:   1

The End!