Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000440.1 Hibiscus syriacus cultivar Beakdansim tig00000804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62044

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9173--9219
12
3.9
12
77
5
51
40
10
2
46
1.50
9360--9430
36
2.0
36
88
5
108
46
4
4
45
1.42
9364--9442
11
6.5
12
72
22
58
46
2
5
45
1.38
9582--9617
2
19.0
2
88
11
58
50
0
0
50
1.00
9575--9619
13
3.5
13
87
9
65
48
0
0
51
1.00
10567--10708
3
48.3
3
90
6
229
64
1
0
33
1.02
18709--18830
60
2.0
60
100
0
244
19
27
13
40
1.88
20596--20628
4
8.0
4
93
6
57
75
0
0
24
0.80
21569--21624
27
2.1
27
96
0
103
16
30
16
37
1.90
22143--22193
3
17.7
3
84
8
70
64
0
0
35
0.94
22138--22192
17
3.1
18
87
10
69
61
0
0
38
0.96
22147--22192
11
4.1
11
86
5
65
63
0
0
36
0.95
22410--22970
122
4.8
122
75
11
444
27
18
14
39
1.89
22658--22983
113
2.9
112
85
2
440
27
18
15
38
1.91
24551--24590
5
8.6
5
78
15
50
2
17
0
80
0.83
24551--24590
9
4.3
10
84
15
50
2
17
0
80
0.83
24550--24590
14
3.1
13
83
16
57
2
17
0
80
0.82
29507--29566
21
2.7
22
79
7
77
23
33
26
16
1.96
31153--31190
18
2.1
18
90
0
58
47
26
26
0
1.52
31296--31333
18
2.1
18
100
0
76
39
23
10
26
1.87
39896--40450
137
4.0
136
79
4
527
24
14
23
36
1.93
40801--41020
102
2.1
104
80
9
247
37
13
17
31
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42969--43045
37
2.1
36
85
7
102
1
24
0
74
0.90
42970--43036
9
7.3
9
75
12
57
1
26
0
71
0.94
42988--43046
9
6.6
9
83
12
77
0
23
0
76
0.79
46019--46074
27
2.0
27
83
10
69
30
1
10
57
1.43
48653--48709
21
2.7
21
86
0
87
21
38
17
22
1.93
48729--48821
20
4.7
20
82
0
114
20
23
22
33
1.97
48924--48963
20
1.9
21
85
10
55
37
37
10
15
1.80
49483--49519
3
12.3
3
100
0
74
67
0
0
32
0.91
53796--53879
28
3.1
27
64
19
68
47
14
4
33
1.65
55148--55777
55
11.4
55
82
4
637
29
24
16
29
1.97
55803--55912
37
2.9
37
87
4
141
23
18
18
40
1.91
57185--57303
6
18.7
6
69
20
55
8
16
0
74
1.05
57185--57303
24
4.7
25
79
13
127
8
16
0
74
1.05
57198--57272
17
4.2
20
73
22
58
8
20
0
72
1.10
57224--57283
9
6.6
9
75
11
59
10
13
0
76
1.01
57236--57273
13
2.7
14
88
8
51
10
18
0
71
1.14
57210--57303
37
2.4
38
79
11
95
8
15
0
75
1.03
57205--57297
9
10.8
9
72
19
56
9
16
0
74
1.07
57185--57307
25
4.9
25
79
15
121
8
16
0
74
1.05
57262--57315
24
2.3
24
84
9
67
9
12
1
75
1.11

Tables:   1

The End!