Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004400.1 Hibiscus syriacus cultivar Beakdansim tig00009648_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91538

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6830--7081
45
5.6
45
86
0
288
43
13
19
23
1.86
26601--26656
27
2.1
27
89
0
85
33
25
12
28
1.92
27269--27398
60
2.2
60
87
4
183
32
19
2
46
1.62
27269--27444
60
2.9
60
84
5
178
31
21
3
43
1.69
27592--27714
60
2.0
60
83
9
153
40
4
22
32
1.73
28469--28613
51
2.9
51
86
1
193
23
13
14
48
1.78
28469--28620
50
3.0
49
84
4
187
23
13
15
48
1.79
29182--29263
20
4.2
19
69
18
62
48
0
3
47
1.19
29791--30086
31
9.8
31
67
16
140
55
0
6
37
1.32
29791--29859
29
2.3
30
90
5
104
55
0
8
36
1.31
29992--30071
28
2.9
26
82
10
88
62
0
3
33
1.13
29905--30096
29
6.6
29
67
19
89
56
1
6
35
1.31
31062--31093
12
2.8
11
95
4
55
68
0
3
28
1.04
31120--31163
21
2.1
21
87
8
63
70
0
2
27
0.99
32482--32525
3
15.0
3
90
4
72
70
0
0
29
0.88
32483--32522
20
2.0
20
95
0
71
72
0
0
27
0.85
32482--32528
23
2.0
23
95
0
85
70
0
0
29
0.88
32824--33389
122
4.7
123
84
5
664
25
18
15
40
1.90
33766--33821
22
2.6
22
94
2
96
37
14
14
33
1.86
38477--38515
2
19.5
2
94
0
69
48
2
0
48
1.15
42318--42351
14
2.4
14
90
5
50
79
0
2
17
0.86
42955--42990
13
2.8
13
91
4
56
63
2
0
33
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42942--42998
24
2.4
24
76
5
62
66
1
3
28
1.18
43525--43585
2
31.0
2
96
3
115
49
0
0
50
1.00
43875--43906
12
2.8
11
95
4
55
68
0
3
28
1.04
45346--45383
3
13.0
3
88
5
60
65
0
2
31
1.06
52274--52353
42
1.9
42
86
0
115
21
33
20
25
1.97
52274--52373
42
2.4
42
82
0
110
21
35
19
25
1.96
52352--52391
21
1.9
21
94
0
71
17
37
22
22
1.94
52346--52397
21
2.5
20
84
12
68
17
34
25
23
1.96
52905--52971
34
2.0
34
85
5
91
49
4
4
41
1.43
53374--53878
138
3.7
138
93
0
832
33
21
21
23
1.97
53763--53987
116
1.9
116
86
1
317
32
20
22
24
1.98
57124--57173
21
2.4
21
83
3
57
50
0
0
50
1.00
63641--63692
17
3.1
17
100
0
104
23
28
25
23
1.99
71789--71815
14
1.9
14
100
0
54
14
22
11
51
1.73
76521--76547
14
1.9
14
100
0
54
14
22
11
51
1.73
80983--81051
29
2.4
29
95
0
120
49
4
17
28
1.66

Tables:   1

The End!