genome.fa.s4401.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004401.1 Hibiscus syriacus cultivar Beakdansim tig00009649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165641

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11--137	67	1.9	68	91	3	211	25	21	10	42	1.84
5562--5624	2	32.0	2	96	3	119	49	0	0	50	1.00
9736--9780	23	2.0	23	86	0	63	51	6	4	37	1.49
12304--12338	2	17.5	2	100	0	70	51	0	0	48	1.00
14741--14767	4	6.8	4	100	0	54	22	0	0	77	0.76
15952--16023	25	3.0	24	76	17	69	41	4	1	52	1.29
15967--16040	27	2.8	26	74	17	71	39	5	1	54	1.32
16698--16727	1	30.0	1	100	0	60	0	0	0	100	0.00
22918--22951	11	3.0	11	87	8	50	26	0	0	73	0.83
29053--29114	25	2.5	24	82	7	79	37	0	1	61	1.06
29100--29481	148	2.6	148	91	0	611	49	7	7	36	1.58
29777--29855	2	39.5	2	100	0	158	50	0	0	49	1.00
30550--30641	33	2.9	33	93	4	154	22	15	41	20	1.90
31210--31263	17	3.4	17	70	19	62	22	22	7	48	1.75
31198--31262	30	2.2	30	97	0	121	26	21	7	44	1.79
31237--31459	98	2.3	99	89	4	337	31	15	16	35	1.91
31336--31641	137	2.2	137	91	4	492	28	17	15	37	1.91
31560--32137	124	4.7	124	92	2	936	27	18	14	39	1.89
32252--32373	36	3.4	36	70	10	104	40	13	17	28	1.87
32221--32337	37	3.2	36	67	11	94	37	11	19	30	1.88
32172--32386	73	2.9	73	90	1	333	38	11	17	32	1.85
33055--33113	22	2.7	22	86	5	84	37	15	13	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34475--34526	19	2.7	19	87	0	86	19	15	32	32	1.93
34553--34592	20	2.0	20	90	0	62	25	15	30	30	1.95
36414--36510	44	2.2	44	83	7	117	26	20	26	25	1.99
42045--42132	46	1.9	45	86	2	122	26	20	25	28	1.99
42155--42193	20	2.0	20	89	0	60	20	15	33	30	1.94
45093--45123	15	2.0	16	93	6	55	6	9	0	83	0.79
47078--47160	28	3.0	26	77	6	85	57	9	14	18	1.63
47207--47238	6	4.9	7	85	14	50	56	12	15	15	1.68
47207--47238	13	2.5	13	94	0	55	56	12	15	15	1.68
49260--49294	16	2.1	16	89	10	52	45	0	0	54	0.99
49308--49691	148	2.6	147	90	2	608	46	8	7	37	1.62
54950--54987	20	1.9	20	94	0	67	34	21	23	21	1.97
54963--55000	13	2.9	13	92	0	67	36	18	23	21	1.95
55533--55566	2	17.0	2	100	0	68	50	0	0	50	1.00
58866--59044	90	2.0	91	92	1	297	45	6	10	37	1.64
66194--66371	90	2.0	90	95	0	320	44	6	10	38	1.64
66975--66999	13	1.9	13	100	0	50	40	20	0	40	1.52
67291--67390	50	2.0	50	100	0	200	36	18	8	38	1.80
69995--70051	19	3.0	19	85	10	73	36	15	10	36	1.82
71373--71483	28	4.0	28	76	4	116	36	22	27	12	1.91
71365--71482	56	2.1	56	82	6	141	38	22	27	11	1.88
75197--75234	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75925--76034	52	2.1	51	86	5	150	23	3	31	40	1.72
75934--76050	51	2.2	53	83	3	139	23	6	29	41	1.80
76060--76094	15	2.3	15	90	0	52	22	8	31	37	1.85
98568--98610	21	2.1	20	86	4	59	69	4	9	16	1.31
99533--99584	22	2.4	21	75	15	52	38	0	3	57	1.17
100597--100742	72	2.0	73	86	6	208	43	10	7	38	1.68
103481--103573	46	2.0	46	100	0	186	48	10	12	27	1.75
106362--106386	8	3.1	8	100	0	50	12	24	28	36	1.91
114843--114891	25	2.0	25	100	0	98	36	10	8	44	1.68
115406--115466	19	3.2	19	79	11	70	22	29	29	18	1.97
121835--121875	19	2.1	20	86	4	57	24	2	17	56	1.53
122738--122893	64	2.5	63	84	1	186	32	19	21	26	1.97
123445--123504	22	3.1	19	77	15	68	20	23	30	26	1.98
126399--126425	2	13.5	2	100	0	54	48	0	0	51	1.00
137171--137494	45	7.2	45	83	3	400	36	9	24	30	1.86
137427--137533	44	2.4	46	83	7	123	36	7	24	31	1.83
142971--143352	45	8.5	45	84	2	448	37	9	21	31	1.86
143122--143189	22	3.0	23	69	20	61	41	10	14	33	1.80
145051--145103	26	2.0	26	81	0	61	24	18	28	28	1.98
145424--145483	21	2.7	22	85	10	70	30	10	0	60	1.30
151851--151905	21	2.5	23	80	19	64	30	9	1	58	1.40
156471--156906	45	9.7	45	85	2	572	36	9	24	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156491--156739	22	11.1	22	62	13	87	36	9	23	30	1.87
157815--157948	45	3.0	43	85	4	160	43	18	16	21	1.88
157815--158026	45	4.7	45	70	18	129	41	18	18	21	1.90
157996--158716	76	9.5	76	83	3	846	38	16	20	24	1.93
157996--158716	38	19.0	38	78	4	677	38	16	20	24	1.93
164980--165018	19	2.1	19	100	0	78	20	25	15	38	1.92

Tables:   1

The End!