Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004402.1 Hibiscus syriacus cultivar Beakdansim tig00009650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60000

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2621--2683
27
2.3
27
100
0
126
38
14
19
28
1.90
4393--4431
17
2.2
18
95
4
71
10
12
33
43
1.77
5261--5308
21
2.3
21
79
17
55
41
2
2
54
1.24
8461--8492
3
11.0
3
93
6
57
65
0
0
34
0.93
8936--9033
45
2.2
45
86
0
133
32
17
22
27
1.96
8692--9082
210
1.9
205
87
4
570
34
19
18
27
1.95
9079--9141
21
2.9
23
68
15
62
17
22
23
36
1.95
9190--9475
45
6.3
45
95
0
500
34
19
22
23
1.96
9410--9855
76
5.9
76
92
1
657
36
18
20
24
1.95
10531--10587
22
2.6
22
97
0
105
36
14
15
33
1.88
11101--11164
2
32.0
2
100
0
128
50
0
0
50
1.00
12432--12511
27
3.0
27
81
12
87
32
3
1
62
1.21
12482--12523
17
2.5
16
88
7
57
28
4
0
66
1.12
12463--12511
13
3.9
12
77
17
55
32
4
0
63
1.13
12533--12568
2
18.0
2
88
0
54
50
0
5
44
1.25
19965--20184
114
1.9
114
93
0
377
33
15
21
30
1.94
21288--21458
76
2.3
74
82
3
189
30
13
23
32
1.93
22793--22872
22
3.6
22
89
0
115
31
13
15
40
1.86
23749--24321
73
7.8
73
97
0
1058
30
18
12
37
1.89
23749--24321
218
2.6
219
96
0
1058
30
18
12
37
1.89
24660--24728
16
4.2
17
78
21
76
49
0
0
50
1.00
24668--24729
2
32.5
2
87
9
94
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26010--26045
16
2.2
16
90
9
56
36
0
0
63
0.94
26048--26081
17
2.0
17
88
11
52
29
5
0
64
1.17
26091--26122
2
16.0
2
100
0
64
50
0
0
50
1.00
26207--26252
22
2.1
22
83
0
56
50
0
0
50
1.00
29666--29911
122
2.0
122
94
0
429
34
19
14
31
1.92
31975--32013
13
3.1
13
85
7
62
66
0
10
23
1.22
31975--32012
12
3.1
12
88
3
58
65
0
10
23
1.23
31966--32027
26
2.3
26
83
8
81
61
4
12
20
1.50
31991--32042
20
2.5
20
90
3
77
63
5
9
21
1.45
31966--32074
47
2.3
47
81
9
125
61
6
11
20
1.52
32018--32046
15
1.9
15
100
0
58
65
6
6
20
1.40
34955--35000
3
15.7
3
90
4
76
65
0
0
34
0.93
34947--35001
23
2.5
23
88
5
87
63
0
0
36
0.95
38263--38303
18
2.3
18
86
0
55
51
0
2
46
1.14
39397--39430
2
17.0
2
100
0
68
50
0
0
50
1.00
45801--45830
3
10.0
3
100
0
60
66
0
33
0
0.92
56499--56566
2
34.5
2
97
2
129
51
48
0
0
1.00

Tables:   1

The End!