genome.fa.s4403.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004403.1 Hibiscus syriacus cultivar Beakdansim tig00009651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76300

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113--903	164	4.8	165	90	5	1146	27	13	22	37	1.91
2010--2171	74	2.2	74	83	4	193	33	17	20	28	1.95
3452--3505	21	2.5	22	93	3	92	35	14	14	35	1.88
3971--5548	113	14.2	112	87	4	1987	37	13	19	29	1.90
3972--5549	561	2.8	558	87	4	2214	37	13	19	29	1.90
5860--5911	3	17.7	3	84	11	72	34	1	0	63	1.06
6357--6402	22	2.1	22	84	11	60	69	6	19	4	1.28
7189--7235	19	2.6	18	90	9	78	17	4	4	74	1.14
7275--7299	12	2.1	12	100	0	50	40	0	0	60	0.97
7930--8017	44	2.0	44	95	0	158	46	11	21	20	1.82
12533--12576	23	1.9	23	95	0	79	9	22	18	50	1.75
15979--16021	22	2.0	22	90	4	70	27	13	6	51	1.67
16010--16082	33	2.2	33	90	2	121	31	8	15	45	1.75
16611--16689	22	3.6	22	94	1	133	18	21	17	41	1.90
18430--18518	41	2.1	43	83	8	112	66	3	2	28	1.20
22009--22059	21	2.5	20	78	12	59	35	7	19	37	1.81
23489--23555	31	2.2	30	81	5	82	47	2	2	46	1.33
23874--23918	23	2.0	23	86	0	63	42	8	15	33	1.78
23830--24079	87	2.9	87	95	1	448	42	10	14	32	1.79
27892--28138	120	2.1	120	94	0	431	38	15	14	31	1.87
27425--28321	302	3.0	303	96	0	1634	35	16	14	33	1.90
28012--28597	183	3.2	183	94	1	1002	33	17	15	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28870--28938	33	2.1	33	91	0	111	23	47	0	28	1.52
28972--29054	21	4.0	21	91	0	130	18	27	10	43	1.83
31275--31321	20	2.4	19	82	10	67	19	17	10	53	1.72
31456--31502	20	2.4	19	79	10	58	21	17	8	53	1.70
31242--31714	181	2.6	182	91	0	732	27	17	13	42	1.87
41159--41675	164	3.1	165	92	2	867	39	14	12	32	1.85
41651--41739	38	2.4	37	90	3	142	39	38	11	11	1.77
43596--43631	19	1.9	19	88	5	56	47	5	0	47	1.25
49971--50014	23	1.9	23	95	0	79	25	27	25	22	2.00
49998--50040	19	2.3	19	80	4	52	25	30	27	16	1.97
55582--55629	22	2.1	22	85	14	62	68	2	0	29	1.01
55814--55870	25	2.3	25	75	0	60	42	5	10	42	1.62
55977--56030	25	2.2	25	89	0	81	35	7	12	44	1.71
57362--57419	31	1.9	31	89	10	93	39	13	17	29	1.88
60319--60363	19	2.4	19	85	7	56	44	6	17	31	1.75
60426--60462	19	1.9	19	89	10	58	62	0	16	21	1.33
60504--60569	18	3.5	18	72	11	60	31	4	15	48	1.65
60507--60589	39	2.1	39	86	0	112	31	4	14	49	1.64
62044--62081	16	2.2	17	86	9	51	63	5	5	26	1.37
64567--64645	3	26.0	3	84	2	104	59	0	5	35	1.19
64881--65207	117	2.8	118	85	2	469	24	22	15	37	1.93
65694--65733	15	2.7	15	88	0	62	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65724--65885	74	2.2	73	87	1	225	41	12	21	24	1.88
65746--66128	36	10.9	36	72	14	275	40	12	19	27	1.88
65856--65979	65	1.9	66	91	5	207	37	14	19	28	1.91
65922--66128	35	6.0	35	75	15	189	40	12	19	27	1.88
65830--66116	101	2.8	102	85	4	393	39	12	19	28	1.88
66119--66518	40	10.0	40	93	0	665	40	12	16	30	1.85
66119--66563	40	11.1	40	89	3	510	40	12	16	30	1.85
66135--66563	80	5.4	79	90	3	562	40	11	16	30	1.85

Tables:   1

The End!