Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004404.1 Hibiscus syriacus cultivar Beakdansim tig00009652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64064
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:14326 original size:19 final size:19
Alignment explanation
Indices: 14299--14337 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
14289 ATGACCAACA
* *
14299 AAATTGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
14318 AAATCGCAACGCGATCTCT
1 AAATCGCAACGCGATCTCT
14337 A
1 A
14338 GTATTGCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:14445 original size:20 final size:20
Alignment explanation
Indices: 14420--14469 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
14410 ATAATACATA
*
14420 ATCGCAACGCGGTTCTGACT
1 ATCGCAACGCGATTCTGACT
14440 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
14460 GTCGCAACGC
1 ATCGCAACGC
14470 TGTATTTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.22, C:0.32, G:0.24, T:0.22
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:17619 original size:18 final size:18
Alignment explanation
Indices: 17596--17630 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17586 AGAAAAAGGC
*
17596 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
17614 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
17631 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:17940 original size:140 final size:140
Alignment explanation
Indices: 17688--17970 Score: 530
Period size: 140 Copynumber: 2.0 Consensus size: 140
17678 GTAAACGTTG
17688 TATTATATGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
1 TATTATATGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
*
17753 TTGAACATTGCTATTATCTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACG
66 TTGAACATTGCTATGATCTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACG
17818 CGAATTTGAC
131 CGAATTTGAC
*
17828 TATTATGTGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
1 TATTATATGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
* *
17893 TTGAACATTGCTATGATTTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATTGCAACG
66 TTGAACATTGCTATGATCTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACG
17958 CGAATTTGAC
131 CGAATTTGAC
17968 TAT
1 TAT
17971 CGCAACGCGA
Statistics
Matches: 139, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 139 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (140 bp):
TATTATATGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
TTGAACATTGCTATGATCTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACG
CGAATTTGAC
Found at i:17966 original size:20 final size:20
Alignment explanation
Indices: 17941--18037 Score: 149
Period size: 20 Copynumber: 4.8 Consensus size: 20
17931 TTACACATTC
* *
17941 ATTTGAATATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
17961 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
17981 ATTTGACTATCGCAACGCAA
1 ATTTGACTATCGCAACGCGA
* *
18001 ATTTGATTATCGCAACGGGA
1 ATTTGACTATCGCAACGCGA
18021 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
18038 AGAAAATCGC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 70 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:18105 original size:20 final size:20
Alignment explanation
Indices: 18080--18133 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
18070 CGCGAATTGA
*
18080 CTTTCGCGTTGCGATTTTGG
1 CTTTCGCATTGCGATTTTGG
18100 CTTTCGCATTGCGATTTTGAG
1 CTTTCGCATTGCGATTTTG-G
*
18121 -TTTAGCATTGCGA
1 CTTTCGCATTGCGA
18134 AAGTGTACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.43
Consensus pattern (20 bp):
CTTTCGCATTGCGATTTTGG
Found at i:18225 original size:13 final size:13
Alignment explanation
Indices: 18207--18274 Score: 82
Period size: 13 Copynumber: 5.1 Consensus size: 13
18197 TTTACATTTC
18207 AATCAATTAAACA
1 AATCAATTAAACA
**
18220 AATCAACTTTTACA
1 AATCAA-TTAAACA
18234 AATCAATTAAACA
1 AATCAATTAAACA
**
18247 AATCAACTTTTACA
1 AATCAA-TTAAACA
18261 AATCAATTAAACA
1 AATCAATTAAACA
18274 A
1 A
18275 GCAAAAAATG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
13 23 0.51
14 22 0.49
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (13 bp):
AATCAATTAAACA
Found at i:18245 original size:27 final size:27
Alignment explanation
Indices: 18185--18274 Score: 144
Period size: 27 Copynumber: 3.2 Consensus size: 27
18175 GATTGAAATC
18185 AACAAATCAACTTTTACATTTCAATCAATTA
1 AACAAATCAACTTTTACA----AATCAATTA
18216 AACAAATCAACTTTTACAAATCAATTA
1 AACAAATCAACTTTTACAAATCAATTA
18243 AACAAATCAACTTTTACAAATCAATTA
1 AACAAATCAACTTTTACAAATCAATTA
18270 AACAA
1 AACAA
18275 GCAAAAAATG
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
27 41 0.69
31 18 0.31
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (27 bp):
AACAAATCAACTTTTACAAATCAATTA
Found at i:19688 original size:21 final size:21
Alignment explanation
Indices: 19664--19750 Score: 86
Period size: 21 Copynumber: 4.1 Consensus size: 21
19654 GAATGGTGGG
* *
19664 AGGGACATCTTCAACGATGAC
1 AGGGACCTCTTGAACGATGAC
* *
19685 AGGGGCCTCTTGAACGATGAG
1 AGGGACCTCTTGAACGATGAC
** *
19706 AGGGGA-CTCTTGAGGGATGAT
1 A-GGGACCTCTTGAACGATGAC
*
19727 AGGGGCCTCTTGAACGATGAC
1 AGGGACCTCTTGAACGATGAC
19748 AGG
1 AGG
19751 TGAGTCGGGC
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
20 3 0.06
21 46 0.88
22 3 0.06
ACGTcount: A:0.26, C:0.18, G:0.36, T:0.20
Consensus pattern (21 bp):
AGGGACCTCTTGAACGATGAC
Found at i:19696 original size:42 final size:42
Alignment explanation
Indices: 19665--19746 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
19655 AATGGTGGGA
19665 GGGACATCTTCAACGATGACAGGGGCCTCTTGAACGATGAGAG
1 GGGAC-TCTTCAACGATGACAGGGGCCTCTTGAACGATGAGAG
* ** *
19708 GGGACTCTTGAGGGATGATAGGGGCCTCTTGAACGATGA
1 GGGACTCTTCAACGATGACAGGGGCCTCTTGAACGATGA
19747 CAGGTGAGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 30 0.86
43 5 0.14
ACGTcount: A:0.26, C:0.18, G:0.35, T:0.21
Consensus pattern (42 bp):
GGGACTCTTCAACGATGACAGGGGCCTCTTGAACGATGAGAG
Found at i:20250 original size:20 final size:20
Alignment explanation
Indices: 20225--20268 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
20215 AATAGTTTCT
20225 GAAACTTAAAATCGCAACAC
1 GAAACTTAAAATCGCAACAC
*
20245 GAAACTTAAAATCGCAACGC
1 GAAACTTAAAATCGCAACAC
20265 GAAA
1 GAAA
20269 ATGACTATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.23, G:0.14, T:0.14
Consensus pattern (20 bp):
GAAACTTAAAATCGCAACAC
Found at i:20278 original size:20 final size:20
Alignment explanation
Indices: 20255--20326 Score: 99
Period size: 20 Copynumber: 3.6 Consensus size: 20
20245 GAAACTTAAA
20255 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
20275 ATCGCAATGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
**
20295 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
20315 ATCGCAATGCGA
1 ATCGCAACGCGA
20327 TAGTCATTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:20376 original size:20 final size:20
Alignment explanation
Indices: 20322--20367 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
20312 ACTATCGCAA
*
20322 TGCGATAGTCATTTCCGCGT
1 TGCGATAGTTATTTCCGCGT
20342 TGCGATAGTTATTTCCGCGT
1 TGCGATAGTTATTTCCGCGT
20362 TGCGAT
1 TGCGAT
20368 TTTAGTTTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (20 bp):
TGCGATAGTTATTTCCGCGT
Found at i:22409 original size:20 final size:20
Alignment explanation
Indices: 22366--22439 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 20
22356 GAAACTTAAA
**
22366 ATCGCAACACGAAAATGAAA
1 ATCGCAACACGAAAATGACT
*
22386 ATCGCAACATGAAAATGACT
1 ATCGCAACACGAAAATGACT
* * **
22406 ATCGTAACGCGAATTTGACT
1 ATCGCAACACGAAAATGACT
*
22426 ATCGCAACGCGAAA
1 ATCGCAACACGAAA
22440 CTAAAATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.18
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:22853 original size:22 final size:22
Alignment explanation
Indices: 22826--22876 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
22816 GATGGAGATA
22826 GACGGATTTCACCGGAGATGGG
1 GACGGATTTCACCGGAGATGGG
***
22848 GACGGATTTTGTCGGAGATGGG
1 GACGGATTTCACCGGAGATGGG
22870 GACGGAT
1 GACGGAT
22877 GTTGCCGTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.14, G:0.43, T:0.22
Consensus pattern (22 bp):
GACGGATTTCACCGGAGATGGG
Found at i:23068 original size:20 final size:20
Alignment explanation
Indices: 23043--23087 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
23033 ATTTTGTATT
*
23043 ATCGCAACGCAATAGTCAGA
1 ATCGCAACGCAATAATCAGA
** *
23063 ATCGCATTGCGATAATCAGA
1 ATCGCAACGCAATAATCAGA
23083 ATCGC
1 ATCGC
23088 GTTGCAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCAATAATCAGA
Found at i:23099 original size:20 final size:20
Alignment explanation
Indices: 23058--23099 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
23048 AACGCAATAG
* *
23058 TCAGAATCGCATTGCGATAA
1 TCAGAATCGCATTGCAAAAA
*
23078 TCAGAATCGCGTTGCAAAAA
1 TCAGAATCGCATTGCAAAAA
23098 TC
1 TC
23100 GCAACGCCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (20 bp):
TCAGAATCGCATTGCAAAAA
Found at i:23197 original size:19 final size:19
Alignment explanation
Indices: 23173--23211 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
23163 TTCGCGATAC
*
23173 TAGAGATCGCGTTGCGATT
1 TAGAGATCGCATTGCGATT
23192 TAGAGATCGCATTGCGATT
1 TAGAGATCGCATTGCGATT
23211 T
1 T
23212 TGTTGGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (19 bp):
TAGAGATCGCATTGCGATT
Found at i:24255 original size:60 final size:60
Alignment explanation
Indices: 24142--24255 Score: 140
Period size: 60 Copynumber: 1.9 Consensus size: 60
24132 CTATGGGATA
* **
24142 TTGCTTTATTAAGTCTCTCGACTATTAAAAGTTACAAAATGATCGTTCAACTATAAAGGG
1 TTGCTTTATTAAGTCTCTCGACTATTAAAAGTTAAAAAATGATCACTCAACTATAAAGGG
* * * * *
24202 TTGCTTTGTTAAGTC-CATCTATTATTAAAAGTTAAAAAATGGTCACTCGACTAT
1 TTGCTTTATTAAGTCTC-TCGACTATTAAAAGTTAAAAAATGATCACTCAACTAT
24256 TTATTATGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
59 1 0.02
60 44 0.98
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (60 bp):
TTGCTTTATTAAGTCTCTCGACTATTAAAAGTTAAAAAATGATCACTCAACTATAAAGGG
Found at i:26211 original size:84 final size:84
Alignment explanation
Indices: 26070--26264 Score: 372
Period size: 84 Copynumber: 2.3 Consensus size: 84
26060 AAATGTATCA
26070 AGGGATAGTTTAACTTGGTTAATATCTAAACTCTAAACTCAAGGCAACATAGAAAAGACAGCGGT
1 AGGGATAGTTTAACTTGGTTAATATCTAAACTCTAAACTCAAGGCAACATAGAAAAGACAGCGGT
26135 GTGGAAATCAACCAATTAT
66 GTGGAAATCAACCAATTAT
26154 AGGGATAGTTTAACTTGGTTAATATCTAAACTCTAAACTCAAGGCAACATAGAAAAGACAGCGGT
1 AGGGATAGTTTAACTTGGTTAATATCTAAACTCTAAACTCAAGGCAACATAGAAAAGACAGCGGT
26219 GTGGAAATCAACCAATTAT
66 GTGGAAATCAACCAATTAT
* *
26238 AGGGATAATTTAACTTGATTAATATCT
1 AGGGATAGTTTAACTTGGTTAATATCT
26265 GCAAGGAGAA
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 109 1.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Consensus pattern (84 bp):
AGGGATAGTTTAACTTGGTTAATATCTAAACTCTAAACTCAAGGCAACATAGAAAAGACAGCGGT
GTGGAAATCAACCAATTAT
Found at i:31630 original size:20 final size:21
Alignment explanation
Indices: 31605--31697 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
31595 TTTTCCCAAT
*
31605 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
31625 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
31646 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
31666 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
31687 TCGCAATGCGA
1 TCGCAATGCGA
31698 TACTTACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:31650 original size:41 final size:41
Alignment explanation
Indices: 31605--31697 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
31595 TTTTCCCAAT
31605 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
31646 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
31687 TCGCAATGCGA
1 TCGCAATGCGA
31698 TACTTACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:31710 original size:41 final size:41
Alignment explanation
Indices: 31624--31758 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
31614 GAATAAGTAA
** *
31624 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATAAGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTTACT
31665 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
* * ** * *
31706 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTTACT
*
31747 TTCGCAACGCGA
1 ATCGCAACGCGA
31759 TACTGACTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 5 0.06
41 74 0.91
42 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
Found at i:31711 original size:20 final size:20
Alignment explanation
Indices: 31686--31779 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
31676 AATTGGGAAA
*
31686 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTTACT
* * * **
31706 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-TACT
*
31727 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTTACT
* *
31747 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTTACT
*
31767 TTCGCAACGCGAT
1 ATCGCAACGCGAT
31780 TTACATAATC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 46 0.77
21 14 0.23
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTTACT
Found at i:31995 original size:22 final size:22
Alignment explanation
Indices: 31967--32010 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31957 CACTCTCTCA
31967 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
31989 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
32011 TATCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:32299 original size:20 final size:20
Alignment explanation
Indices: 32274--32311 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32264 CGATTCTCTC
32274 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
32294 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
32312 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:33651 original size:18 final size:18
Alignment explanation
Indices: 33630--33674 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
33620 TCCACTTCGG
*
33630 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
33648 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
33666 GAGCCATCA
1 GAGCCATCA
33675 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:34180 original size:20 final size:19
Alignment explanation
Indices: 34146--34200 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
34136 TAGTTTACTT
*
34146 TCGCAACACGAAATGACTA
1 TCGCAACGCGAAATGACTA
*
34165 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGACTA
*
34185 TCGCAATGCGAAATGA
1 TCGCAACGCGAAATGA
34201 AAATCACAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (19 bp):
TCGCAACGCGAAATGACTA
Found at i:34219 original size:14 final size:14
Alignment explanation
Indices: 34200--34257 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
34190 ATGCGAAATG
*
34200 AAAATCACAACGAC
1 AAAATCGCAACGAC
*
34214 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
34230 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
34246 AAAATCGCAACG
1 AAAATCGCAACG
34258 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.50, C:0.26, G:0.16, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:34243 original size:32 final size:33
Alignment explanation
Indices: 34184--34274 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
34174 GGAAATGGCT
* *
34184 ATCGCAATGCGAAATGAAAATCACAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
34217 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
34249 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
34275 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 31 0.56
33 24 0.44
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:34268 original size:19 final size:19
Alignment explanation
Indices: 34146--34279 Score: 83
Period size: 19 Copynumber: 7.6 Consensus size: 19
34136 TAGTTTACTT
* **
34146 TCGCAACACGAAATGACTA
1 TCGCAACGCGAAATGAAAA
***
34165 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
34185 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
* *
34204 TCACAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
34218 TCGCAACGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
*
34236 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
34250 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
34269 TCGCAATGCGA
1 TCGCAACGCGA
34280 TTTGTGTTTC
Statistics
Matches: 90, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
14 19 0.21
15 1 0.01
16 6 0.07
17 2 0.02
18 11 0.12
19 34 0.38
20 17 0.19
ACGTcount: A:0.43, C:0.24, G:0.20, T:0.13
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:34349 original size:19 final size:19
Alignment explanation
Indices: 34286--34408 Score: 105
Period size: 20 Copynumber: 6.7 Consensus size: 19
34276 GCGATTTGTG
34286 TTTCGCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTCA
34304 TTTCGCGTTGCGA-TTT--
1 TTTCGCGTTGCGATTTTCA
*
34320 TGT--CGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
* ***
34337 TTTCGCATTGCGATAGCCA
1 TTTCGCGTTGCGATTTTCA
**
34356 TTTCCGCGTTGCGATAGTCA
1 TTT-CGCGTTGCGATTTTCA
*
34376 TTTCGCGTTGCGATTTTAA
1 TTTCGCGTTGCGATTTTCA
*
34395 GTTTCGTGTTGCGA
1 -TTTCGCGTTGCGA
34409 AAGTAAACTA
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
14 8 0.09
15 3 0.03
16 2 0.02
17 2 0.02
18 16 0.19
19 26 0.30
20 29 0.34
ACGTcount: A:0.13, C:0.20, G:0.24, T:0.42
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:34406 original size:39 final size:37
Alignment explanation
Indices: 34275--34408 Score: 111
Period size: 39 Copynumber: 3.6 Consensus size: 37
34265 AAAATCGCAA
34275 TGCGATTTGT-GTTTCGCGTTGCGATTTCATTTCGCGT
1 TGCGATTT-TAGTTTCGCGTTGCGATTTCATTTCGCGT
*
34312 TGCGATTTT-G--T--CGTTGCGATTTTCATTTCGCAT
1 TGCGATTTTAGTTTCGCGTTGCGA-TTTCATTTCGCGT
*** *
34345 TGCGATAGCCA-TTTCCGCGTTGCGATAGTCATTTCGCGT
1 TGCGAT-TTTAGTTT-CGCGTTGCGAT-TTCATTTCGCGT
*
34384 TGCGATTTTAAGTTTCGTGTTGCGA
1 TGCGATTTT-AGTTTCGCGTTGCGA
34409 AAGTAAACTA
Statistics
Matches: 76, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
32 8 0.11
33 18 0.24
34 1 0.01
36 3 0.04
37 8 0.11
38 1 0.01
39 34 0.45
40 3 0.04
ACGTcount: A:0.13, C:0.19, G:0.25, T:0.43
Consensus pattern (37 bp):
TGCGATTTTAGTTTCGCGTTGCGATTTCATTTCGCGT
Found at i:36429 original size:19 final size:19
Alignment explanation
Indices: 36407--36474 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
36397 ATCGCAACGA
36407 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
36426 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
36445 GAAAATCGCAA--CG--A-
1 GAAAATCGCAATGCGAAAT
36459 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
36475 TTTTCATTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
14 11 0.24
15 1 0.02
16 2 0.04
17 2 0.04
19 30 0.65
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:36550 original size:20 final size:20
Alignment explanation
Indices: 36493--36550 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
36483 TCGTATTGCG
* *
36493 ATTTTCTCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAGCC
36513 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
36533 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
36551 TCAAATGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:37659 original size:24 final size:24
Alignment explanation
Indices: 37608--37661 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
37598 GTATTCGAAA
* *
37608 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCAGAC
* *
37632 TTTGATATTGGTCAATACTCAGAT
1 TTTGATATTGGTCAATACCCAGAC
37656 TTTGAT
1 TTTGAT
37662 GATGTTTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCAGAC
Found at i:37853 original size:12 final size:12
Alignment explanation
Indices: 37836--37860 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37826 ATATAATCCT
37836 GAAGAAGAAAAA
1 GAAGAAGAAAAA
37848 GAAGAAGAAAAA
1 GAAGAAGAAAAA
37860 G
1 G
37861 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:40942 original size:33 final size:33
Alignment explanation
Indices: 40885--40972 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
40875 ACGAGATAAT
*
40885 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
40919 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
*
40952 GACAATCGCAACGCGAAATGA
1 GAGAATCGCAACGCGAAATGA
40973 AAATTGCAAC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 37 0.73
34 14 0.27
ACGTcount: A:0.39, C:0.25, G:0.25, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:40981 original size:19 final size:19
Alignment explanation
Indices: 40860--41044 Score: 165
Period size: 19 Copynumber: 10.1 Consensus size: 19
40850 TCTTTTGGTT
*
40860 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
40879 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
40899 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
40917 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
40933 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
40951 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
40966 GAAATGAAAATTGCAACCGC
1 GAAATGAAAATCGCAA-CGC
*
40986 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
41005 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
41024 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
41043 GA
1 GA
41045 TTTTGGTTTC
Statistics
Matches: 136, Mismatches: 17, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
14 19 0.14
15 3 0.02
16 2 0.01
17 1 0.01
18 4 0.03
19 61 0.45
20 44 0.32
21 2 0.01
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:40998 original size:39 final size:38
Alignment explanation
Indices: 40955--41044 Score: 144
Period size: 39 Copynumber: 2.3 Consensus size: 38
40945 GCGACCAGAC
*
40955 AATCGCAACGCGAAATGAAAATTGCAACCGCGAAATAAA
1 AATCGCAACGCGAAATGAAAATCGCAA-CGCGAAATAAA
*
40994 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATAAA
*
41032 AATCGCAATGCGA
1 AATCGCAACGCGA
41045 TTTTGGTTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
38 22 0.46
39 26 0.54
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.12
Consensus pattern (38 bp):
AATCGCAACGCGAAATGAAAATCGCAACGCGAAATAAA
Found at i:41073 original size:19 final size:19
Alignment explanation
Indices: 41040--41084 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
41030 AAAATCGCAA
*
41040 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
*
41059 TGCGATTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
41078 TGCGATT
1 TGCGATT
41085 ATCTTGTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.16, G:0.27, T:0.49
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:41688 original size:21 final size:21
Alignment explanation
Indices: 41653--41714 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 21
41643 GTTGCGAAAG
* *
41653 TAAGTATCTCGTTGCGATTTT
1 TAAGTATCGCATTGCGATTTT
* * **
41674 TTATTATCGCATTGCGA-TAG
1 TAAGTATCGCATTGCGATTTT
41694 TAAGTATCGCATTGCGATTTT
1 TAAGTATCGCATTGCGATTTT
41715 CCCAATTCGC
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.44
Consensus pattern (21 bp):
TAAGTATCGCATTGCGATTTT
Found at i:41729 original size:21 final size:21
Alignment explanation
Indices: 41700--41792 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
41690 ATAGTAAGTA
41700 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
41721 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
41741 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
41762 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
41782 TCGCATTGCGA
1 TCGCATTGCGA
41793 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:41730 original size:41 final size:41
Alignment explanation
Indices: 41639--41773 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
41629 GCTATGTAAA
* * * ** *
41639 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
*
41679 ATCGCATTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
41721 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
41762 TCGCGTTGCGAT
1 TCGCGTTGCGAT
41774 TTACTTATTC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 4 0.05
41 75 0.93
42 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:41774 original size:41 final size:41
Alignment explanation
Indices: 41700--41792 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
41690 ATAGTAAGTA
41700 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
41741 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
41782 TCGCATTGCGA
1 TCGCATTGCGA
41793 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:42976 original size:22 final size:22
Alignment explanation
Indices: 42951--42995 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
42941 AAAGTACGTT
*
42951 AAGTGAAATATAAAAGAGAGTA
1 AAGTGAAATAAAAAAGAGAGTA
** *
42973 AAGTTCAATAAAAAAGCGAGTA
1 AAGTGAAATAAAAAAGAGAGTA
42995 A
1 A
42996 TTTATCCTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.04, G:0.20, T:0.18
Consensus pattern (22 bp):
AAGTGAAATAAAAAAGAGAGTA
Found at i:51875 original size:18 final size:17
Alignment explanation
Indices: 51852--51896 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
51842 GTTTCTGAGA
51852 GAATTGGAATCTGTGAAG
1 GAATTGGAATCTGT-AAG
* *
51870 GAATTGAAATCTGTCAG
1 GAATTGGAATCTGTAAG
51887 GAATTGGAAT
1 GAATTGGAAT
51897 ATGAATCTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (17 bp):
GAATTGGAATCTGTAAG
Found at i:53285 original size:16 final size:17
Alignment explanation
Indices: 53264--53296 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
53254 CATTACAATA
53264 AAAAAT-CTAAATCCCT
1 AAAAATCCTAAATCCCT
53280 AAAAATCCTAAATCCCT
1 AAAAATCCTAAATCCCT
53297 TACCCCTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATCCTAAATCCCT
Found at i:54581 original size:32 final size:32
Alignment explanation
Indices: 54506--54568 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
54496 TTGCTTCAAA
**
54506 CTAAA-ATTAATCAATTTGATATTGATATGAC
1 CTAAAGATTAATTTATTTGATATTGATATGAC
*
54537 CTAAAGATTAATTTATTTGATATTGATCTGAC
1 CTAAAGATTAATTTATTTGATATTGATATGAC
54569 TCGATATCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (32 bp):
CTAAAGATTAATTTATTTGATATTGATATGAC
Found at i:56155 original size:17 final size:17
Alignment explanation
Indices: 56133--56167 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
56123 GGAAACAAAC
56133 ACTTCTAACTTCATACA
1 ACTTCTAACTTCATACA
56150 ACTTCTAACTTCATACA
1 ACTTCTAACTTCATACA
56167 A
1 A
56168 TCTATGGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (17 bp):
ACTTCTAACTTCATACA
Done.