genome.fa.s4405.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004405.1 Hibiscus syriacus cultivar Beakdansim tig00009653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74861

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4027--4226	100	2.0	98	89	10	309	35	16	9	40	1.79
8046--8086	22	2.0	20	85	9	55	53	2	0	43	1.13
11244--11328	36	2.4	36	84	3	102	32	9	15	42	1.79
11265--11325	21	3.2	21	63	26	53	32	4	14	47	1.66
11264--11335	36	2.0	36	94	0	126	30	5	16	47	1.70
12525--12557	15	2.2	15	94	0	57	54	15	24	6	1.63
16119--16179	21	3.2	21	65	26	62	32	3	16	47	1.63
16119--16197	36	2.2	35	93	2	131	32	2	18	45	1.63
17992--18047	3	18.3	3	96	3	103	33	0	0	66	0.92
18126--18193	31	2.2	31	94	0	118	23	29	13	33	1.93
19403--19433	6	5.2	6	100	0	62	16	0	0	83	0.64
22407--22442	9	3.9	10	82	17	51	16	0	0	83	0.65
22866--22961	40	2.4	40	91	1	149	28	22	18	30	1.98
23085--23130	20	2.3	20	88	7	67	34	10	39	15	1.82
23186--23297	31	3.6	30	78	14	120	12	23	27	36	1.91
26066--26314	14	17.8	14	73	9	195	46	4	7	40	1.52
26019--26323	42	7.3	42	92	0	468	46	5	6	41	1.52
29532--29725	81	2.4	82	84	4	257	14	15	12	56	1.67
29950--30006	30	1.9	30	92	0	96	29	19	17	33	1.95
34805--34863	23	2.6	23	83	0	82	20	22	25	32	1.98
36956--37008	21	2.5	21	96	0	97	32	28	16	22	1.96
40289--40321	17	1.9	17	93	0	57	42	21	21	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43066--43250	51	3.7	50	85	6	241	49	16	8	26	1.73
43066--43247	101	1.8	100	86	5	269	49	16	7	26	1.72
58128--58374	125	2.0	122	86	2	341	39	15	13	31	1.86
60764--60798	17	2.1	17	100	0	70	34	0	28	37	1.58
62390--62454	32	2.0	32	82	5	78	44	12	9	33	1.74
62405--62468	32	2.0	32	87	0	92	40	10	9	39	1.73
62410--62577	32	5.3	31	68	14	83	39	11	8	39	1.74
63685--63717	17	2.0	17	94	5	59	24	0	27	48	1.51
65086--65131	18	2.6	18	86	3	67	28	30	6	34	1.82
71102--71133	12	2.5	13	90	10	57	21	0	0	78	0.76

Tables:   1

The End!