Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004407.1 Hibiscus syriacus cultivar Beakdansim tig00009661_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72929

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1613
196
8.3
198
92
5
2691
30
16
15
37
1.90
1--1613
389
4.1
394
92
5
2685
30
16
15
37
1.90
1--1613
585
2.8
588
95
3
2897
30
16
15
37
1.90
5882--5924
20
2.3
18
85
14
61
20
16
11
51
1.75
6054--6099
20
2.3
20
89
10
76
17
17
10
54
1.70
7968--8086
35
3.3
36
85
5
152
32
4
17
45
1.68
7968--8086
37
3.3
36
84
8
145
32
4
17
45
1.68
9408--9447
20
2.0
20
95
0
71
17
25
35
22
1.95
13621--13688
36
1.9
35
90
3
109
29
4
19
47
1.69
14944--15018
37
2.0
37
97
0
141
44
18
6
30
1.76
16803--16841
20
2.0
20
89
0
60
41
20
0
38
1.53
22409--22435
2
13.5
2
100
0
54
51
0
0
48
1.00
24023--24142
21
5.6
21
75
7
98
28
14
20
37
1.91
24012--24102
42
2.2
42
85
0
119
24
16
21
37
1.94
24075--24176
44
2.3
44
81
3
116
25
14
23
36
1.93
25902--25954
21
2.5
21
93
0
97
39
13
22
24
1.90
26788--26853
24
2.8
24
86
2
98
27
25
25
21
1.99
29686--29752
29
2.3
29
94
0
116
44
4
17
32
1.69
34652--34759
38
2.8
38
84
1
126
43
12
5
38
1.65
34880--35168
114
2.5
115
84
2
341
43
14
6
35
1.71
34823--35208
58
6.7
58
80
4
354
43
13
6
36
1.69
34925--35208
114
2.5
114
83
4
338
41
14
6
36
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35288--35322
2
17.5
2
100
0
70
48
0
0
51
1.00
35360--35469
45
2.7
40
76
14
114
40
16
8
34
1.78
35375--35492
45
2.6
45
81
7
150
40
16
6
36
1.75
39853--39956
52
2.0
52
92
3
174
32
3
23
40
1.72
43137--43175
21
1.9
21
89
5
62
15
28
25
30
1.96
43138--43236
9
10.3
9
75
12
81
15
28
28
28
1.96
43139--43236
19
5.1
19
78
14
78
14
28
28
28
1.95
43137--43236
29
3.4
30
83
9
118
16
28
28
28
1.97
43232--43270
17
2.3
17
95
0
69
17
43
23
15
1.87
44152--44275
63
2.0
63
82
6
153
16
28
29
25
1.97
45384--45473
30
3.0
29
76
7
92
44
4
14
36
1.65
50421--50459
11
3.5
11
85
3
51
46
7
0
46
1.31
51837--52107
144
1.9
145
90
2
440
26
11
4
57
1.52
54978--55016
2
19.5
2
94
0
69
51
2
0
46
1.14
62633--62809
43
4.1
43
82
0
219
29
31
17
21
1.96
62633--62842
86
2.4
86
85
1
269
29
29
18
22
1.97
62633--62847
43
5.0
43
80
1
216
30
29
18
21
1.97
63195--63431
66
3.5
66
73
13
210
29
21
10
37
1.87
63247--63361
37
3.1
36
72
3
113
26
23
11
38
1.89
63263--63370
36
3.0
36
71
12
96
26
22
12
38
1.89
63622--63753
40
3.2
39
74
12
122
25
31
17
25
1.97
63470--63723
131
1.9
131
87
0
373
25
29
17
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63620--63814
83
2.3
84
84
1
250
25
28
19
26
1.99
68740--68808
24
3.0
24
80
14
74
28
2
2
65
1.22

Tables:   1

The End!