Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004409.1 Hibiscus syriacus cultivar Beakdansim tig00009664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77885
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Found at i:600 original size:8 final size:9
Alignment explanation
Indices: 575--627 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
565 AGATTCAATC
*
575 AGAAAAAAA
1 AGAAGAAAA
584 AGAAGAAAA
1 AGAAGAAAA
*
593 AGAAAAAAA
1 AGAAGAAAA
*
602 ACAAGAAAA
1 AGAAGAAAA
611 A-AAG-AAA
1 AGAAGAAAA
618 AGAAGCAAAA
1 AGAAG-AAAA
628 TCAAAAGGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
7 4 0.11
8 6 0.16
9 24 0.65
10 3 0.08
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (9 bp):
AGAAGAAAA
Found at i:602 original size:20 final size:20
Alignment explanation
Indices: 577--618 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
567 ATTCAATCAG
577 AAAAAA-AAGAAGAAAAAGAA
1 AAAAAACAAGAA-AAAAAGAA
597 AAAAAACAAGAAAAAAAGAA
1 AAAAAACAAGAAAAAAAGAA
617 AA
1 AA
619 GAAGCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.86, C:0.02, G:0.12, T:0.00
Consensus pattern (20 bp):
AAAAAACAAGAAAAAAAGAA
Found at i:618 original size:18 final size:18
Alignment explanation
Indices: 575--611 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
565 AGATTCAATC
*
575 AGAAAAAAAAGAAGAAAA
1 AGAAAAAAAACAAGAAAA
593 AGAAAAAAAACAAGAAAA
1 AGAAAAAAAACAAGAAAA
611 A
1 A
612 AAGAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAACAAGAAAA
Found at i:1658 original size:17 final size:17
Alignment explanation
Indices: 1636--1669 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1626 TCAACATCAA
*
1636 ATATTGGGGCATTTTGG
1 ATATTGGGGCATCTTGG
1653 ATATTGGGGCATCTTGG
1 ATATTGGGGCATCTTGG
1670 GGATTCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.35, T:0.38
Consensus pattern (17 bp):
ATATTGGGGCATCTTGG
Found at i:2465 original size:37 final size:37
Alignment explanation
Indices: 2395--2466 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
2385 TGGAACTAAG
* * *
2395 TTTTGTCTCTCTTGAGACAGTTTTTCTTAAAACAAAA
1 TTTTGTCTCCCTTGAGACAGTTTCTCATAAAACAAAA
*
2432 TTTTGTCTCCCTTGAGACTA-TTTCTCATGAAACAA
1 TTTTGTCTCCCTTGAGAC-AGTTTCTCATAAAACAA
2467 CAAATATCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 29 0.97
38 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (37 bp):
TTTTGTCTCCCTTGAGACAGTTTCTCATAAAACAAAA
Found at i:3224 original size:106 final size:106
Alignment explanation
Indices: 3070--3495 Score: 708
Period size: 106 Copynumber: 4.0 Consensus size: 106
3060 TCACGCCACC
* * *
3070 CGAGACAACACAAGTTCAACTTCACAACGAATGGACGTCTGGTTGTCAACAAACAACTTCCCAAT
1 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
3135 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
66 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
*
3176 CAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
1 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
* * **
3241 TTCAGAGCCAATTTCAACTTCACAGCAAAGGGCATTGGACT
66 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
*
3282 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGATGGTTGTCAACAAACAATTTCCCAAT
1 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
*
3347 TTCAAAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
66 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
* * *
3388 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAGCAATTTCACAGT
1 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
* * *
3453 TCCAGAACCAATTTCAACTTCACGGCGGAGGATATTGGACT
66 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
3494 CG
1 CG
3496 GAACAATACA
Statistics
Matches: 297, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 297 1.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.21
Consensus pattern (106 bp):
CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
Found at i:6604 original size:27 final size:28
Alignment explanation
Indices: 6568--6621 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
6558 TAGAAGAAAC
*
6568 ATAATTATCTTTTATCTAT-ATTATAATA
1 ATAATTATCTATTAT-TATCATTATAATA
6596 ATAA-TATCTATTATTATCATTATAAT
1 ATAATTATCTATTATTATCATTATAAT
6622 TGGATTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 3 0.12
27 17 0.71
28 4 0.17
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (28 bp):
ATAATTATCTATTATTATCATTATAATA
Found at i:10427 original size:32 final size:32
Alignment explanation
Indices: 10391--10460 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
10381 CCGATACTAA
10391 CAGTGTTGCATTAAGATAATACACAACAATGT
1 CAGTGTTGCATTAAGATAATACACAACAATGT
** *
10423 CAGTGTTGCATTCGGATAATGCACAACAATGT
1 CAGTGTTGCATTAAGATAATACACAACAATGT
10455 CAGTGT
1 CAGTGT
10461 CACATTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (32 bp):
CAGTGTTGCATTAAGATAATACACAACAATGT
Found at i:10474 original size:32 final size:32
Alignment explanation
Indices: 10401--10482 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
10391 CAGTGTTGCA
* **
10401 TTAAGATAATACACAACAATGTCAGTGTTGCAT
1 TTAA-ATAATGCACAACAATGTCAGTGTCACAT
***
10434 TCGGATAATGCACAACAATGTCAGTGTCACAT
1 TTAAATAATGCACAACAATGTCAGTGTCACAT
*
10466 TTAAATAATGCAAAACA
1 TTAAATAATGCACAACA
10483 GTTACAGTCA
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
32 38 0.97
33 1 0.03
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (32 bp):
TTAAATAATGCACAACAATGTCAGTGTCACAT
Found at i:11267 original size:30 final size:29
Alignment explanation
Indices: 11209--11276 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
11199 AAGTTAATGT
11209 GACCACCGAACTTTCAATTGAATCAATCA
1 GACCACCGAACTTTCAATTGAATCAATCA
* *
11238 GACCACCTAACTATTTAATT-AATTCAATCA
1 GACCACCGAACT-TTCAATTGAA-TCAATCA
* *
11268 AATCACCGA
1 GACCACCGA
11277 CCGTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 13 0.41
30 19 0.59
ACGTcount: A:0.40, C:0.26, G:0.07, T:0.26
Consensus pattern (29 bp):
GACCACCGAACTTTCAATTGAATCAATCA
Found at i:11719 original size:17 final size:17
Alignment explanation
Indices: 11685--11720 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11675 ATAACAAATT
*
11685 AAACAAATTATTCGTTA
1 AAACAAATTATTAGTTA
*
11702 AAACAAATTATTATTTA
1 AAACAAATTATTAGTTA
11719 AA
1 AA
11721 TTAATTGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (17 bp):
AAACAAATTATTAGTTA
Found at i:12056 original size:140 final size:141
Alignment explanation
Indices: 11883--12224 Score: 479
Period size: 140 Copynumber: 2.4 Consensus size: 141
11873 ATGGTTAAAG
*
11883 AAAAAAAATTCGGTTAATTCGGTTTGGTTAATAATTTTCAAATTAGTTCGGTTCGGTTAATAATT
1 AAAAAAAATTCGGTTAATTCGGTTTGGTTAATAATTTTCAAATTAATTCGGTTCGGTTAATAATT
*
11948 TTCAAATAAATTTTAGTTCTATTAACCGAACCAAATTAACCAAATTTTTTCTTCGATTAATTCGA
66 TTCAAATAAATTTTAGTTCGATTAACCGAACCAAATTAACCAAATTTTTTCTTCGATTAATTCGA
12013 TGAATA-ATTT
131 TGAATACATTT
* * * ** *
12023 AAAAAAAAATCGATTAATTCCGTCCGATTAATAATTTTCAAATTAATTCGGTTCGGTTAATAATT
1 AAAAAAAATTCGGTTAATTCGGTTTGGTTAATAATTTTCAAATTAATTCGGTTCGGTTAATAATT
* * ** * *
12088 TTCAAATAAATTTTGGTTCGATTAACCGAACCGAATTAACTGAATTTTTTTTTCGATTAATTCGG
66 TTCAAATAAATTTTAGTTCGATTAACCGAACCAAATTAACCAAATTTTTTCTTCGATTAATTCGA
* *
12153 TTAATACTTTT
131 TGAATACATTT
* * * * *
12164 CAAAAAAATTCGGTTAATTCGGTTTGGTTAATAATTTTTAAATAAAATTTGGTTCGATTAA
1 AAAAAAAATTCGGTTAATTCGGTTTGGTTAATAATTTTCAAAT-TAATTCGGTTCGGTTAA
12225 CCGAACCGAA
Statistics
Matches: 173, Mismatches: 27, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
140 121 0.70
141 38 0.22
142 14 0.08
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (141 bp):
AAAAAAAATTCGGTTAATTCGGTTTGGTTAATAATTTTCAAATTAATTCGGTTCGGTTAATAATT
TTCAAATAAATTTTAGTTCGATTAACCGAACCAAATTAACCAAATTTTTTCTTCGATTAATTCGA
TGAATACATTT
Found at i:12068 original size:29 final size:29
Alignment explanation
Indices: 12035--12099 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
12025 AAAAAAATCG
12035 ATTAATTCCGTCCGATTAATAATTTTCAA
1 ATTAATTCCGTCCGATTAATAATTTTCAA
* * *
12064 ATTAATTCGGTTCGGTTAATAATTTTCAA
1 ATTAATTCCGTCCGATTAATAATTTTCAA
*
12093 ATAAATT
1 ATTAATT
12100 TTGGTTCGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.43
Consensus pattern (29 bp):
ATTAATTCCGTCCGATTAATAATTTTCAA
Found at i:12338 original size:113 final size:112
Alignment explanation
Indices: 12064--12365 Score: 469
Period size: 112 Copynumber: 2.7 Consensus size: 112
12054 TAATTTTCAA
* *
12064 ATTAATTCGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCGATTAACCGAACCGAATTAACT
1 ATTAATTCGGTTCGGTTAATAATTTTTAAATAAATTTTGGTTCGATTAACCGAACCGAATTAACC
* *
12129 GAATTTTTTTTTCGATTAATTCGGTTAATACTTTTCAAAAAAATTCG
66 GAATTTTTTCTTCGATTAATTCGGTTAATAATTTTCAAAAAAATTCG
* * *
12176 GTTAATTCGGTTTGGTTAATAATTTTTAAATAAAATTTGGTTCGATTAACCGAACCGAATTAACC
1 ATTAATTCGGTTCGGTTAATAATTTTTAAATAAATTTTGGTTCGATTAACCGAACCGAATTAACC
* * *
12241 AAATTTTTTCTTCGATTAATTCGGTTAATAATTTTCAAAAAAGTTTTG
66 GAATTTTTTCTTCGATTAATTCGGTTAATAATTTTCAAAAAA-ATTCG
* * *
12289 ATTGATTTGGTTCGGTTAATAATTTTTAAATAAATTTTGGTTTGATTAACCGAACCGAATTAACC
1 ATTAATTCGGTTCGGTTAATAATTTTTAAATAAATTTTGGTTCGATTAACCGAACCGAATTAACC
*
12354 GATTTTTTTCTT
66 GAATTTTTTCTT
12366 TAACCGTTAA
Statistics
Matches: 171, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
112 99 0.58
113 72 0.42
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.43
Consensus pattern (112 bp):
ATTAATTCGGTTCGGTTAATAATTTTTAAATAAATTTTGGTTCGATTAACCGAACCGAATTAACC
GAATTTTTTCTTCGATTAATTCGGTTAATAATTTTCAAAAAAATTCG
Found at i:14201 original size:27 final size:27
Alignment explanation
Indices: 14163--14226 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
14153 ACGAGCCGAG
*
14163 TCGAGCTCGAGTATTGCCGAACTCGAC
1 TCGAACTCGAGTATTGCCGAACTCGAC
*
14190 TCGAACTCGAGTATTGCTGAACTCGAC
1 TCGAACTCGAGTATTGCCGAACTCGAC
14217 TCGAACTCGA
1 TCGAACTCGA
14227 AAACTCGCGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (27 bp):
TCGAACTCGAGTATTGCCGAACTCGAC
Found at i:14343 original size:11 final size:11
Alignment explanation
Indices: 14327--14435 Score: 78
Period size: 11 Copynumber: 9.5 Consensus size: 11
14317 AAAATTCAAG
14327 AGCTCGATTGA
1 AGCTCGATTGA
*
14338 AGCTCGAGACTCG-
1 AGCTC--GA-TTGA
14351 AGCTCGATTGA
1 AGCTCGATTGA
14362 AGCTCGATTTTGA
1 AGCTCGA--TTGA
*
14375 A-CTCGATTCA
1 AGCTCGATTGA
*
14385 AGCTCGATTTTA
1 AGCTCGA-TTGA
*
14397 AGCTCGATTCA
1 AGCTCGATTGA
* *
14408 AGCTCTATTTTA
1 AGCTCGA-TTGA
*
14420 AGCTCGATTCA
1 AGCTCGATTGA
14431 AGCTC
1 AGCTC
14436 AACGGGTTAA
Statistics
Matches: 80, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
10 6 0.08
11 36 0.45
12 24 0.30
13 12 0.15
14 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (11 bp):
AGCTCGATTGA
Found at i:14381 original size:12 final size:13
Alignment explanation
Indices: 14358--14428 Score: 66
Period size: 12 Copynumber: 6.0 Consensus size: 13
14348 TCGAGCTCGA
14358 TTGAAGCTCGATT
1 TTGAAGCTCGATT
14371 TTGAA-CTCGA--
1 TTGAAGCTCGATT
*
14381 TTCAAGCTCGATT
1 TTGAAGCTCGATT
14394 TT-AAGCTCGA--
1 TTGAAGCTCGATT
* *
14404 TTCAAGCTCTATT
1 TTGAAGCTCGATT
14417 TT-AAGCTCGATT
1 TTGAAGCTCGATT
14429 CAAGCTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
10 6 0.12
11 12 0.24
12 22 0.45
13 9 0.18
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (13 bp):
TTGAAGCTCGATT
Found at i:14387 original size:23 final size:23
Alignment explanation
Indices: 14351--14435 Score: 136
Period size: 23 Copynumber: 3.7 Consensus size: 23
14341 TCGAGACTCG
*
14351 AGCTCGATTGAAGCTCGATTTTGA
1 AGCTCGATTCAAGCTCGATTTT-A
14375 A-CTCGATTCAAGCTCGATTTTA
1 AGCTCGATTCAAGCTCGATTTTA
*
14397 AGCTCGATTCAAGCTCTATTTTA
1 AGCTCGATTCAAGCTCGATTTTA
14420 AGCTCGATTCAAGCTC
1 AGCTCGATTCAAGCTC
14436 AACGGGTTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
22 2 0.03
23 55 0.95
24 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (23 bp):
AGCTCGATTCAAGCTCGATTTTA
Found at i:16833 original size:7 final size:7
Alignment explanation
Indices: 16821--16881 Score: 52
Period size: 7 Copynumber: 8.9 Consensus size: 7
16811 CATAATCGGA
16821 TTTAGGG
1 TTTAGGG
16828 TTTAGGG
1 TTTAGGG
**
16835 TTTATAG
1 TTTAGGG
*
16842 TTTAGGA
1 TTTAGGG
* *
16849 TTCATGG
1 TTTAGGG
*
16856 TTTA-TG
1 TTTAGGG
16862 TTTAGGG
1 TTTAGGG
*
16869 TTTAAGG
1 TTTAGGG
16876 TTTAGG
1 TTTAGG
16882 ATTAATTACA
Statistics
Matches: 40, Mismatches: 13, Indels: 2
0.73 0.24 0.04
Matches are distributed among these distances:
6 5 0.12
7 35 0.88
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:17007 original size:11 final size:11
Alignment explanation
Indices: 16991--17053 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
16981 GTATTATAGA
16991 ATTTTTAATAT
1 ATTTTTAATAT
17002 ATTTTTTAA-AT
1 A-TTTTTAATAT
*
17013 -TTTATAAT-T
1 ATTTTTAATAT
*** *
17022 ATCAATAATGT
1 ATTTTTAATAT
17033 ATTTTTAATAT
1 ATTTTTAATAT
17044 ATTTTTAATA
1 ATTTTTAATA
17054 ATGTAATTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
9 7 0.17
10 6 0.15
11 21 0.51
12 7 0.17
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (11 bp):
ATTTTTAATAT
Found at i:18690 original size:23 final size:23
Alignment explanation
Indices: 18664--18732 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
18654 CACCACAGCT
*
18664 CGTAAAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
*
18687 CGTAGAATTGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
18710 CGTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
18733 TATAAGATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.35, C:0.26, G:0.25, T:0.14
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:19458 original size:2 final size:2
Alignment explanation
Indices: 19451--19479 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
19441 TTTTATTATC
19451 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19480 CCAATGTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:19958 original size:23 final size:23
Alignment explanation
Indices: 19912--19960 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
19902 TCTTATATAA
* *
19912 TCACATGAATTATTTATATCTAT
1 TCACATGAATTATTAACATCTAT
* *
19935 TCACATGATTTATTAACATGTAT
1 TCACATGAATTATTAACATCTAT
19958 TCA
1 TCA
19961 TACATATCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (23 bp):
TCACATGAATTATTAACATCTAT
Found at i:23027 original size:19 final size:19
Alignment explanation
Indices: 23003--23044 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22993 ATATCTTTTC
* *
23003 TTTCATACTCCCTTACTCT
1 TTTCATACTACCTTACACT
*
23022 TTTCATATTACCTTACACT
1 TTTCATACTACCTTACACT
23041 TTTC
1 TTTC
23045 TATCAATCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.19, C:0.31, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTCATACTACCTTACACT
Found at i:25756 original size:23 final size:23
Alignment explanation
Indices: 25710--25758 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
25700 TCTTATATAA
* *
25710 TCACATGAATTATTTATATCTAT
1 TCACATGAATTATTAACATCTAT
* *
25733 TCACATGATTTATTAACATGTAT
1 TCACATGAATTATTAACATCTAT
25756 TCA
1 TCA
25759 TACATATCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (23 bp):
TCACATGAATTATTAACATCTAT
Found at i:31657 original size:23 final size:23
Alignment explanation
Indices: 31609--31707 Score: 112
Period size: 23 Copynumber: 4.4 Consensus size: 23
31599 TCCTTATGGA
* * * *
31609 CATTT-TATATGGAACTTCAGTA
1 CATTTCTATGTGGCACTTCGGTG
* *
31631 CATTTCTACGCGGCACTTCGGTG
1 CATTTCTATGTGGCACTTCGGTG
*
31654 CATTTTTATGTGGCACTTCGGTG
1 CATTTCTATGTGGCACTTCGGTG
*
31677 CATTTCTATGTGGAACTTCGGTG
1 CATTTCTATGTGGCACTTCGGTG
31700 CA-TTCTAT
1 CATTTCTAT
31708 ACGAGATATG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 11 0.17
23 54 0.83
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.39
Consensus pattern (23 bp):
CATTTCTATGTGGCACTTCGGTG
Found at i:31958 original size:18 final size:18
Alignment explanation
Indices: 31918--31963 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
31908 TGACTAAGAG
* *
31918 ATAATAATGAAAATAATG
1 ATAATAATGAAAAGAATA
* *
31936 CTAATAATGATAAGAATA
1 ATAATAATGAAAAGAATA
31954 ATAATAATGA
1 ATAATAATGA
31964 CAATGAAATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.59, C:0.02, G:0.11, T:0.28
Consensus pattern (18 bp):
ATAATAATGAAAAGAATA
Found at i:32361 original size:16 final size:17
Alignment explanation
Indices: 32334--32367 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
32324 ATTTTCATTC
32334 TTTTGTAAAAGTAAATG
1 TTTTGTAAAAGTAAATG
*
32351 TTTTG-AAAAGTCAATG
1 TTTTGTAAAAGTAAATG
32367 T
1 T
32368 GACACCTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (17 bp):
TTTTGTAAAAGTAAATG
Found at i:33427 original size:6 final size:6
Alignment explanation
Indices: 33416--34277 Score: 1597
Period size: 6 Copynumber: 145.7 Consensus size: 6
33406 TCCGATGTTG
33416 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
*
33464 GTATAT GTATAT GTATAT TTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33512 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33560 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33608 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33656 GTATAT GTATAT GTATAT GTATAT GTATAT G--TAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33702 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33750 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT G--TAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33796 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33844 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33892 GTATAT GTATAT GTATAT GTATAT G--TAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33938 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATA- GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
33985 GTATAT GTATAT GTATAT G--TAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
34031 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT G--TAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
34077 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
34125 G--TAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
34171 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
**
34219 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT AAATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
34267 GTATATT GTAT
1 GTATA-T GTAT
34278 GAAGTTACTT
Statistics
Matches: 836, Mismatches: 6, Indels: 27
0.96 0.01 0.03
Matches are distributed among these distances:
4 24 0.03
5 5 0.01
6 802 0.96
7 5 0.01
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
GTATAT
Found at i:35990 original size:15 final size:17
Alignment explanation
Indices: 35959--35990 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
35949 ATATATTTTT
35959 ATCTATCTTGCAATTTA
1 ATCTATCTTGCAATTTA
35976 ATCTA-CTTG-AATTTA
1 ATCTATCTTGCAATTTA
35991 TTATATTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.31, C:0.16, G:0.06, T:0.47
Consensus pattern (17 bp):
ATCTATCTTGCAATTTA
Found at i:36119 original size:12 final size:13
Alignment explanation
Indices: 36079--36130 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 13
36069 TGTAACAAAG
36079 AAAAGGAAAAT-A-
1 AAAA-GAAAATAAC
36091 AAAAGAAAATAAC
1 AAAAGAAAATAAC
*
36104 AAAAGAAAGT-AC
1 AAAAGAAAATAAC
36116 AAAA-AAAA-AAC
1 AAAAGAAAATAAC
36127 AAAA
1 AAAA
36131 ACCAAAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
11 15 0.43
12 11 0.31
13 9 0.26
ACGTcount: A:0.79, C:0.06, G:0.10, T:0.06
Consensus pattern (13 bp):
AAAAGAAAATAAC
Found at i:36159 original size:11 final size:11
Alignment explanation
Indices: 36085--36159 Score: 55
Period size: 11 Copynumber: 6.5 Consensus size: 11
36075 AAAGAAAAGG
36085 AAAATAA-AAA
1 AAAATAACAAA
36095 GAAAATAACAAA
1 -AAAATAACAAA
36107 AGAAAGT-ACAAA
1 A-AAA-TAACAAA
*
36119 AAAAAAACAAA
1 AAAATAACAAA
* *
36130 AACCAAAAATCATA
1 AA--AATAA-CAAA
36144 AAAATAACAAA
1 AAAATAACAAA
36155 AAAAT
1 AAAAT
36160 GTAGCGCATC
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
11 26 0.49
12 16 0.30
13 6 0.11
14 5 0.09
ACGTcount: A:0.77, C:0.09, G:0.04, T:0.09
Consensus pattern (11 bp):
AAAATAACAAA
Found at i:36362 original size:2 final size:2
Alignment explanation
Indices: 36355--36385 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
36345 CAATTATAAA
36355 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36386 ATTTCGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:42641 original size:2 final size:2
Alignment explanation
Indices: 42628--42663 Score: 54
Period size: 2 Copynumber: 17.5 Consensus size: 2
42618 ATACATCCAA
*
42628 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT CAT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A
42664 CATACATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:43064 original size:23 final size:23
Alignment explanation
Indices: 43020--43083 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
43010 CAGCTTGTAT
*
43020 AAATGCACCGAAGTGCCACGTAG
1 AAATGCACCGAAGGGCCACGTAG
* * *
43043 AATTGCACCTAAGGGCCGCGTAG
1 AAATGCACCGAAGGGCCACGTAG
*
43066 AAATGCACCGAAGTGCCA
1 AAATGCACCGAAGGGCCA
43084 TATAAGATGT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.14
Consensus pattern (23 bp):
AAATGCACCGAAGGGCCACGTAG
Found at i:49586 original size:62 final size:62
Alignment explanation
Indices: 49511--49627 Score: 198
Period size: 62 Copynumber: 1.9 Consensus size: 62
49501 TCGCCAAGCA
* * *
49511 CTCCTGCTCCTCGCGTGATTCCTCTTGCAGTTGCTCAGGAGACCTCATGCATGCACCTATTC
1 CTCCTCCTCCTCGCGTGATTCCTCTTGCAGCTACTCAGGAGACCTCATGCATGCACCTATTC
*
49573 CTCCTCCTCCTCGCGTGATTCCTCTTGCAGCTACTCAGGATACCTCATGCATGCA
1 CTCCTCCTCCTCGCGTGATTCCTCTTGCAGCTACTCAGGAGACCTCATGCATGCA
49628 GCTGTAATAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.15, C:0.37, G:0.18, T:0.30
Consensus pattern (62 bp):
CTCCTCCTCCTCGCGTGATTCCTCTTGCAGCTACTCAGGAGACCTCATGCATGCACCTATTC
Found at i:50138 original size:21 final size:21
Alignment explanation
Indices: 50112--50152 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50102 TTAGTTAATG
50112 AGTTTGTTAGTATAAATTATT
1 AGTTTGTTAGTATAAATTATT
* *
50133 AGTTTGTTAGTTTAAGTTAT
1 AGTTTGTTAGTATAAATTAT
50153 ATTATATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (21 bp):
AGTTTGTTAGTATAAATTATT
Found at i:50599 original size:14 final size:14
Alignment explanation
Indices: 50580--50606 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50570 GTAATTTATT
50580 ATTTTTTGTTGTTC
1 ATTTTTTGTTGTTC
50594 ATTTTTTGTTGTT
1 ATTTTTTGTTGTT
50607 GTGTATGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.04, G:0.15, T:0.74
Consensus pattern (14 bp):
ATTTTTTGTTGTTC
Found at i:50720 original size:82 final size:83
Alignment explanation
Indices: 50628--50786 Score: 266
Period size: 82 Copynumber: 1.9 Consensus size: 83
50618 AATTAGTTAG
*
50628 TTTATATTAGAGTATATAAAATTAATTTGTTTAATTTATTCCCCTTT-AAAAAATATTGTGTTTA
1 TTTATATTAGAGTATATAAAATTAATTTGTTTAATTTATTCCACTTTAAAAAAATATTGTGTTTA
*
50692 AAATTATTTAGTGTTTAT
66 AAAATATTTAGTGTTTAT
* * *
50710 TTTATATTAGATTATATAAAATTAATTTGTTTAATTTGTTCCAGTTTAAAAAAATATTGTGTTTA
1 TTTATATTAGAGTATATAAAATTAATTTGTTTAATTTATTCCACTTTAAAAAAATATTGTGTTTA
50775 AAAATATTTAGT
66 AAAATATTTAGT
50787 ATTGTTTTAA
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
82 43 0.61
83 28 0.39
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (83 bp):
TTTATATTAGAGTATATAAAATTAATTTGTTTAATTTATTCCACTTTAAAAAAATATTGTGTTTA
AAAATATTTAGTGTTTAT
Found at i:50775 original size:17 final size:17
Alignment explanation
Indices: 50753--50813 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
50743 ATTTGTTCCA
50753 GTTTAAAAAAATATTGT
1 GTTTAAAAAAATATTGT
50770 GTTTAAAAATATTTAGTATTGT
1 GTTTAAAAA-A---A-TATTGT
*
50792 -TTTAAAAAAATATTTT
1 GTTTAAAAAAATATTGT
50808 GTTTAA
1 GTTTAA
50814 TTTATATTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
16 5 0.14
17 15 0.41
18 1 0.03
20 1 0.03
21 9 0.24
22 6 0.16
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (17 bp):
GTTTAAAAAAATATTGT
Found at i:50800 original size:22 final size:23
Alignment explanation
Indices: 50764--50806 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
50754 TTTAAAAAAA
50764 TATTGTGTTT-AAAAATATTTAG
1 TATTGTGTTTAAAAAATATTTAG
50786 TATTGT-TTTAAAAAAATATTT
1 TATTGTGTTT-AAAAAATATTT
50807 TGTTTAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 3 0.16
22 6 0.32
23 10 0.53
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (23 bp):
TATTGTGTTTAAAAAATATTTAG
Found at i:50817 original size:22 final size:23
Alignment explanation
Indices: 50774--50817 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
50764 TATTGTGTTT
**
50774 AAAAATATTTAGTATTGTTTTAA
1 AAAAATATTTAGTATTAATTTAA
*
50797 AAAAATATTTTGT-TTAATTTA
1 AAAAATATTTAGTATTAATTTA
50818 TATTAGATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (23 bp):
AAAAATATTTAGTATTAATTTAA
Found at i:53943 original size:49 final size:49
Alignment explanation
Indices: 53885--54049 Score: 285
Period size: 49 Copynumber: 3.3 Consensus size: 49
53875 CATAATTATT
53885 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
*
53934 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAG
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
* * *
53983 TAGTAATGATTTGTAATAATAAAATTATTATTAATATTTAATGATTTGA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
54032 TAGTAATGATTTAGTAAT
1 TAGTAATGA-TTAGTAAT
54050 TATTAATAAT
Statistics
Matches: 109, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 102 0.94
50 7 0.06
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (49 bp):
TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
Found at i:54075 original size:17 final size:19
Alignment explanation
Indices: 54035--54116 Score: 68
Period size: 18 Copynumber: 4.5 Consensus size: 19
54025 GATTTGATAG
54035 TAATGATTTAGTAATTATTAA
1 TAATGATTTA--AATTATTAA
54056 TAAT-ATTTAAATTA-TAA
1 TAATGATTTAAATTATTAA
*
54073 TAATGATTTTAA-TATT--
1 TAATGATTTAAATTATTAA
* *
54089 TAATGATTT-GATGATTTAA
1 TAATGATTTAAATTA-TTAA
54108 TAATGATTT
1 TAATGATTT
54117 GATAATAATC
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
15 1 0.02
16 10 0.19
17 11 0.21
18 12 0.23
19 9 0.17
20 5 0.10
21 4 0.08
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (19 bp):
TAATGATTTAAATTATTAA
Found at i:54108 original size:16 final size:16
Alignment explanation
Indices: 53964--54097 Score: 62
Period size: 18 Copynumber: 8.1 Consensus size: 16
53954 GAAATTATTA
53964 TTAATATTTAATGA-T
1 TTAATATTTAATGATT
* *
53979 TTAGTA-GTAATGATT
1 TTAATATTTAATGATT
** *
53994 TGTAATAATAAAATTATT
1 T-TAAT-ATTTAATGATT
54012 ATTAATATTTAATGA-T
1 -TTAATATTTAATGATT
* *
54028 TTGATA-GTAATGATT
1 TTAATATTTAATGATT
54043 TAGTAATTATTAATAAT-ATT
1 T--TAA-TATT--TAATGATT
* *
54063 TAAATTATAATAATGATT
1 TTAA-TAT-TTAATGATT
54081 TTAATATTTAATGATT
1 TTAATATTTAATGATT
54097 T
1 T
54098 GATGATTTAA
Statistics
Matches: 88, Mismatches: 17, Indels: 27
0.67 0.13 0.20
Matches are distributed among these distances:
14 12 0.14
15 14 0.16
16 13 0.15
17 16 0.18
18 24 0.27
19 1 0.01
20 4 0.05
21 4 0.05
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (16 bp):
TTAATATTTAATGATT
Found at i:54134 original size:26 final size:26
Alignment explanation
Indices: 54105--54397 Score: 335
Period size: 26 Copynumber: 11.7 Consensus size: 26
54095 TTTGATGATT
*
54105 TAATAATGATTTGATAATAATCATTA
1 TAATAATGATTTAATAATAATCATTA
*
54131 TAATAATGATTTAGTAATAATCATTA
1 TAATAATGATTTAATAATAATCATTA
*
54157 TAATAATGA-TT--TAATAATGATT-
1 TAATAATGATTTAATAATAATCATTA
* * *
54179 T--TAAT-ATTTAATGATTTGATGATT-
1 TAATAATGATTTAAT-A-ATAATCATTA
* *
54203 TAGTAATGATTTGATAATAATCATTA
1 TAATAATGATTTAATAATAATCATTA
*
54229 TAATAATGATTTAGTAATAATCATTA
1 TAATAATGATTTAATAATAATCATTA
*
54255 TAATAATGATTTAATAATAA-C--GA
1 TAATAATGATTTAATAATAATCATTA
54278 TAATAATGATTTAATAATAATCATTA
1 TAATAATGATTTAATAATAATCATTA
54304 TAATAATGATTTAATAATAATCATTA
1 TAATAATGATTTAATAATAATCATTA
*
54330 TAATAATGATTTAATAATAATGATT-
1 TAATAATGATTTAATAATAATCATTA
* *
54355 TAACAATGATTTAATAATTAT--TTA
1 TAATAATGATTTAATAATAATCATTA
*
54379 TTACTAATGATTTAATAAT
1 -TAATAATGATTTAATAAT
54398 TATTACTAAT
Statistics
Matches: 233, Mismatches: 20, Indels: 29
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.00
20 6 0.03
22 2 0.01
23 34 0.15
24 9 0.04
25 44 0.19
26 131 0.56
27 6 0.03
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (26 bp):
TAATAATGATTTAATAATAATCATTA
Found at i:54183 original size:98 final size:98
Alignment explanation
Indices: 54070--54377 Score: 451
Period size: 98 Copynumber: 3.1 Consensus size: 98
54060 ATTTAAATTA
54070 TAATAATGATTTTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATCATTATAAT
1 TAATAATGATTTTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATCATTATAAT
54135 AATGATTTAGTAATAATCATTATAATAATGATT
66 AATGATTTAGTAATAATCATTATAATAATGATT
*
54168 TAATAATGATTTTAATATTTAATGATTTGATGATTTAGTAATGATTTGATAATAATCATTATAAT
1 TAATAATGATTTTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATCATTATAAT
54233 AATGATTTAGTAATAATCATTATAATAATGATT
66 AATGATTTAGTAATAATCATTATAATAATGATT
** * * * *
54266 TAATAATAACGATAATAATGATTTAAT-A-ATAATCATTATAATAATGATTTAATAATAATCATT
1 TAATAAT---GATTTTAAT-ATTTAATGATTTGATGATT-TAATAATGATTTGATAATAATCATT
* * *
54329 ATAATAATGATTTAATAATAATGATT-TAACAATGATT
61 ATAATAATGATTTAGTAATAATCATTATAATAATGATT
*
54366 TAATAATTATTT
1 TAATAATGATTT
54378 ATTACTAATG
Statistics
Matches: 191, Mismatches: 14, Indels: 11
0.88 0.06 0.05
Matches are distributed among these distances:
97 2 0.01
98 104 0.54
100 23 0.12
101 55 0.29
102 7 0.04
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (98 bp):
TAATAATGATTTTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATCATTATAAT
AATGATTTAGTAATAATCATTATAATAATGATT
Found at i:56708 original size:11 final size:11
Alignment explanation
Indices: 56694--56754 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
56684 ATAAACTATT
*
56694 CTTTAATATAG
1 CTTTAATATAA
*
56705 CTTTAACTAT-T
1 CTTTAA-TATAA
56716 CTTTAATATAA
1 CTTTAATATAA
*
56727 CTTTAACTAT-T
1 CTTTAA-TATAA
56738 CTTTAATATAA
1 CTTTAATATAA
56749 CTTTAA
1 CTTTAA
56755 CTAATAAACT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
10 6 0.14
11 30 0.71
12 6 0.14
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (11 bp):
CTTTAATATAA
Found at i:56712 original size:22 final size:22
Alignment explanation
Indices: 56687--56757 Score: 133
Period size: 22 Copynumber: 3.2 Consensus size: 22
56677 ACAACTAATA
*
56687 AACTATTCTTTAATATAGCTTT
1 AACTATTCTTTAATATAACTTT
56709 AACTATTCTTTAATATAACTTT
1 AACTATTCTTTAATATAACTTT
56731 AACTATTCTTTAATATAACTTT
1 AACTATTCTTTAATATAACTTT
56753 AACTA
1 AACTA
56758 ATAAACTATT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.37, C:0.14, G:0.01, T:0.48
Consensus pattern (22 bp):
AACTATTCTTTAATATAACTTT
Found at i:56774 original size:15 final size:16
Alignment explanation
Indices: 56730--56778 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 16
56720 AATATAACTT
56730 TAACTATTCTTTAATA
1 TAACTATTCTTTAATA
***
56746 TAACT-TTAACTAATA
1 TAACTATTCTTTAATA
56761 -AACTATTCTTTAATA
1 TAACTATTCTTTAATA
56776 TAA
1 TAA
56779 TTTAGTACTA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 14 0.56
16 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (16 bp):
TAACTATTCTTTAATA
Found at i:56795 original size:31 final size:30
Alignment explanation
Indices: 56731--56796 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
56721 ATATAACTTT
*
56731 AACTATTCTTTAATATAACTTTAACTAATA
1 AACTATTCTTTAATATAACTTTAACTAAAA
56761 AACTATTCTTTAATATAA-TTTAGTACTAAAA
1 AACTATTCTTTAATATAACTTTA--ACTAAAA
56792 AACTA
1 AACTA
56797 ATTAACTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 4 0.12
30 18 0.55
31 11 0.33
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.41
Consensus pattern (30 bp):
AACTATTCTTTAATATAACTTTAACTAAAA
Found at i:57002 original size:21 final size:21
Alignment explanation
Indices: 56978--57017 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
56968 TTTCTATATG
56978 ATATAACTTAAACTAACAATA
1 ATATAACTTAAACTAACAATA
56999 ATATAACTTAAACTAACAA
1 ATATAACTTAAACTAACAA
57018 ACTAATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (21 bp):
ATATAACTTAAACTAACAATA
Found at i:57098 original size:18 final size:18
Alignment explanation
Indices: 57045--57099 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
57035 TTGTTTTACC
*
57045 CTAATTTATAATAATAAA
1 CTAATTTATAACAATAAA
57063 CTAA--T-TAAC--T-AA
1 CTAATTTATAACAATAAA
57075 -TAATTTATAACAATAAA
1 CTAATTTATAACAATAAA
57092 CTAATTTA
1 CTAATTTA
57100 AATAATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 14
0.66 0.02 0.32
Matches are distributed among these distances:
11 3 0.10
12 2 0.07
13 2 0.07
14 4 0.14
15 3 0.10
16 2 0.07
17 2 0.07
18 11 0.38
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (18 bp):
CTAATTTATAACAATAAA
Found at i:57353 original size:363 final size:362
Alignment explanation
Indices: 56734--57407 Score: 932
Period size: 363 Copynumber: 1.8 Consensus size: 362
56724 TAACTTTAAC
* * *
56734 TATTCTTTAATATAACTTTAACTAATAAACTATTCTTTAATATAATTTAGTACTAAAAAACTAAT
1 TATTCTTTAATATAACTTAAACTAATAAACTATTCTTTAATATAATTAACTACTAAAAAACTAAT
56799 TAACTAATTTTTTTTATATAATATAAATTCAACAAACAAATATAACTTAACTATTTAACTAACAC
66 TAACTAA-TTTTTTTATATAATATAAATTCAACAAACAAATATAACTTAACTATTTAACTAACAC
*
56864 AAACTAATTACATATTTTTTTTATATATAACTAACGAATAACAAACTAACTAATTATTTTTATTA
130 AAACTAATTACA-A------TTATATATAACTAAC--ATAACAAACTAACTAATTAGTTTTATTA
* ** * * *
56929 ATATGTAATTATCAAACATACTAATTAAATAATTTTTTATTTCTATATGATATAACTTAAACTAA
186 ATATATAACCATCAAACAAACTAATTAAATAATTTTATATTTATATATGATATAACTTAAACTAA
**
56994 CAATAATATAACTTAAACTAACAAACTAATTAACTAATTTTTTGTTTTACCCTAATTTATAATAA
251 CAATAATATAACTTAAACTAACAAACTAATTAACTAAAATTTTGTTTTACCCTAATTTATAATAA
57059 TAAACTAATTAACTAATAATTTATAACAATAAACTAATTTAAATAAT
316 TAAACTAATTAACTAATAATTTATAACAATAAACTAATTTAAATAAT
* * *
57106 TATTCTTTTATATAACTTAAACTAATAAACTATTTTTTATTATAATAAAACTTAAACTACTAATA
1 TATTCTTTAATATAACTTAAACTAATAAACTATTCTTTA--AT-AT--AA-TT-AACTACTAAAA
*
57171 AACTAATTAACTAA-TTTTTTATATAATATAAATTCAACAACCAAAATATAACTTAACTATTTAA
59 AACTAATTAACTAATTTTTTTATATAATATAAATTCAACAAAC-AAATATAACTTAACTATTTAA
* * *
57235 CTAACTACAAACTAATTAC-A-TAT-TA-GACTAAC-TAACACACTAATTAATT-GTTTT-TTAA
123 CTAAC-ACAAACTAATTACAATTATATATAACTAACATAACAAACTAACTAATTAGTTTTATTAA
*
57293 TATATAACCATCAAACAAACTAATTAAATAATTTTATATTTATGTATGATATAACTTAAACTAAC
187 TATATAACCATCAAACAAACTAATTAAATAATTTTATATTTATATATGATATAACTTAAACTAAC
*
57358 AATAATATAACTTAAACTAACTAACTAATTAACTAAAATTTTGTTTTACC
252 AATAATATAACTTAAACTAACAAACTAATTAACTAAAATTTTGTTTTACC
57408 TTAAACTAAC
Statistics
Matches: 272, Mismatches: 21, Indels: 27
0.85 0.07 0.08
Matches are distributed among these distances:
363 109 0.40
364 4 0.01
365 15 0.06
368 6 0.02
369 2 0.01
370 3 0.01
372 36 0.13
374 2 0.01
375 2 0.01
377 30 0.11
378 28 0.10
379 35 0.13
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.40
Consensus pattern (362 bp):
TATTCTTTAATATAACTTAAACTAATAAACTATTCTTTAATATAATTAACTACTAAAAAACTAAT
TAACTAATTTTTTTATATAATATAAATTCAACAAACAAATATAACTTAACTATTTAACTAACACA
AACTAATTACAATTATATATAACTAACATAACAAACTAACTAATTAGTTTTATTAATATATAACC
ATCAAACAAACTAATTAAATAATTTTATATTTATATATGATATAACTTAAACTAACAATAATATA
ACTTAAACTAACAAACTAATTAACTAAAATTTTGTTTTACCCTAATTTATAATAATAAACTAATT
AACTAATAATTTATAACAATAAACTAATTTAAATAAT
Found at i:57365 original size:21 final size:23
Alignment explanation
Indices: 57341--57391 Score: 81
Period size: 21 Copynumber: 2.3 Consensus size: 23
57331 TTTATGTATG
57341 ATATAACTTAAACTAAC-AA-TA
1 ATATAACTTAAACTAACTAACTA
57362 ATATAACTTAAACTAACTAACTA
1 ATATAACTTAAACTAACTAACTA
57385 AT-TAACT
1 ATATAACT
57392 AAAATTTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.61
22 7 0.25
23 4 0.14
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (23 bp):
ATATAACTTAAACTAACTAACTA
Found at i:57444 original size:38 final size:39
Alignment explanation
Indices: 57368--57451 Score: 143
Period size: 39 Copynumber: 2.2 Consensus size: 39
57358 AATAATATAA
*
57368 CTTAAACTAACTAACTAATTAACTAAAATTTTGTTTTAC
1 CTTAAACTAACCAACTAATTAACTAAAATTTTGTTTTAC
*
57407 CTTAAACTAACCAACTAATTAACT-AAATTTTTTTTTAC
1 CTTAAACTAACCAACTAATTAACTAAAATTTTGTTTTAC
57445 CTTAAAC
1 CTTAAAC
57452 CATAAACTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 20 0.47
39 23 0.53
ACGTcount: A:0.40, C:0.18, G:0.01, T:0.40
Consensus pattern (39 bp):
CTTAAACTAACCAACTAATTAACTAAAATTTTGTTTTAC
Found at i:57469 original size:37 final size:37
Alignment explanation
Indices: 57368--57469 Score: 98
Period size: 39 Copynumber: 2.7 Consensus size: 37
57358 AATAATATAA
* **
57368 CTTAAACTAACTAACTAATTAACTAAAATTTTGTTTTAC
1 CTTAAACCAAC-AACTAACAAACT-AAATTTTGTTTTAC
* ** *
57407 CTTAAACTAACCAACTAATTAACTAAATTTTTTTTTAC
1 CTTAAACCAA-CAACTAACAAACTAAATTTTGTTTTAC
57445 CTTAAACCATA-AACTAACAAACTAA
1 CTTAAACCA-ACAACTAACAAACTAA
57470 TAATTTAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
37 12 0.21
38 21 0.37
39 23 0.40
40 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.01, T:0.36
Consensus pattern (37 bp):
CTTAAACCAACAACTAACAAACTAAATTTTGTTTTAC
Found at i:57497 original size:9 final size:9
Alignment explanation
Indices: 57468--57505 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
57458 CTAACAAACT
57468 AATAATTTAA
1 AATAA-TTAA
57478 AATAA-TAA
1 AATAATTAA
57486 AATAATTAA
1 AATAATTAA
57495 AATAATTAA
1 AATAATTAA
57504 AA
1 AA
57506 AATCTTACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.30
9 14 0.52
10 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AATAATTAA
Found at i:57719 original size:12 final size:12
Alignment explanation
Indices: 57687--57765 Score: 56
Period size: 11 Copynumber: 6.8 Consensus size: 12
57677 GAGCTGAAGC
57687 GCTGCAATAA-T
1 GCTGCAATAAGT
**
57698 GCAACAATAAGT
1 GCTGCAATAAGT
*
57710 GTTGCAATAA-T
1 GCTGCAATAAGT
**
57721 GCAACAATAAGT
1 GCTGCAATAAGT
*
57733 GTTGCAATAA-T
1 GCTGCAATAAGT
**
57744 GCAACAATAAGT
1 GCTGCAATAAGT
*
57756 GATGCAATAA
1 GCTGCAATAA
57766 TGCAGCTGAA
Statistics
Matches: 48, Mismatches: 17, Indels: 5
0.69 0.24 0.07
Matches are distributed among these distances:
11 24 0.50
12 24 0.50
ACGTcount: A:0.44, C:0.14, G:0.18, T:0.24
Consensus pattern (12 bp):
GCTGCAATAAGT
Found at i:57719 original size:23 final size:23
Alignment explanation
Indices: 57689--57769 Score: 153
Period size: 23 Copynumber: 3.5 Consensus size: 23
57679 GCTGAAGCGC
57689 TGCAATAATGCAACAATAAGTGT
1 TGCAATAATGCAACAATAAGTGT
57712 TGCAATAATGCAACAATAAGTGT
1 TGCAATAATGCAACAATAAGTGT
*
57735 TGCAATAATGCAACAATAAGTGA
1 TGCAATAATGCAACAATAAGTGT
57758 TGCAATAATGCA
1 TGCAATAATGCA
57770 GCTGAATTCA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (23 bp):
TGCAATAATGCAACAATAAGTGT
Found at i:57895 original size:29 final size:29
Alignment explanation
Indices: 57854--57937 Score: 132
Period size: 29 Copynumber: 2.9 Consensus size: 29
57844 GCAAGCATAC
* *
57854 ATGTCGCTCGGATGCCCTGGCGACTTACA
1 ATGTCGCTGGGATGCCCTGGCGACCTACA
* *
57883 ATGTCGCTGGGATGCCCTGACGACCTATA
1 ATGTCGCTGGGATGCCCTGGCGACCTACA
57912 ATGTCGCTGGGATGCCCTGGCGACCT
1 ATGTCGCTGGGATGCCCTGGCGACCT
57938 GCCCATTCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.24
Consensus pattern (29 bp):
ATGTCGCTGGGATGCCCTGGCGACCTACA
Found at i:58022 original size:30 final size:30
Alignment explanation
Indices: 57988--58049 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
57978 GGCACCGAAC
*
57988 GTTGCATGAGCCATGCACAACACCACACAG
1 GTTGCACGAGCCATGCACAACACCACACAG
* *
58018 GTTGCACGAGCCATGCAGAGCACCACACAG
1 GTTGCACGAGCCATGCACAACACCACACAG
58048 GT
1 GT
58050 CGCCCGGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.13
Consensus pattern (30 bp):
GTTGCACGAGCCATGCACAACACCACACAG
Found at i:58757 original size:30 final size:29
Alignment explanation
Indices: 58642--58755 Score: 124
Period size: 30 Copynumber: 3.8 Consensus size: 29
58632 ATATACGTAA
*
58642 TAAGTTACA-ATAAAAATAAAATATTTTTT
1 TAAGTTA-AGATAAGAATAAAATATTTTTT
*
58671 TAAAAGTTAAGATAAGAATAAAATATGTTTT
1 T--AAGTTAAGATAAGAATAAAATATTTTTT
* *
58702 TAAGTTGATG-TAAGAGTAAAATATATTTTT
1 TAAGTT-AAGATAAGAATAAAATAT-TTTTT
*
58732 TAAGTTAAGATAAGATTAAAATAT
1 TAAGTTAAGATAAGAATAAAATAT
58756 ATATTTTCCA
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
29 21 0.29
30 26 0.36
31 25 0.35
ACGTcount: A:0.49, C:0.01, G:0.11, T:0.39
Consensus pattern (29 bp):
TAAGTTAAGATAAGAATAAAATATTTTTT
Found at i:60429 original size:2 final size:2
Alignment explanation
Indices: 60422--60448 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
60412 ACCATTTAAT
60422 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
60449 GTTTTAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60597 original size:28 final size:28
Alignment explanation
Indices: 60565--60619 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
60555 CCGTCATTGC
*
60565 TTTCAA-TCACTAGCTCGATGACATAATA
1 TTTCAAGT-ACTAACTCGATGACATAATA
*
60593 TTTCAAGTACTAACTTGATGACATAAT
1 TTTCAAGTACTAACTCGATGACATAAT
60620 GTAAACGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (28 bp):
TTTCAAGTACTAACTCGATGACATAATA
Found at i:64211 original size:23 final size:22
Alignment explanation
Indices: 64180--64241 Score: 88
Period size: 23 Copynumber: 2.8 Consensus size: 22
64170 CGATTCCCCT
64180 AGGGGGAATCGGTTCCCCTTCA
1 AGGGGGAATCGGTTCCCCTTCA
*
64202 ACGGGGGAATCGGTTCCCCTTTA
1 A-GGGGGAATCGGTTCCCCTTCA
* *
64225 AGGGGGTATCGATTCCC
1 AGGGGGAATCGGTTCCC
64242 TCTGCCCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
22 15 0.42
23 21 0.58
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (22 bp):
AGGGGGAATCGGTTCCCCTTCA
Found at i:71885 original size:12 final size:12
Alignment explanation
Indices: 71868--71893 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71858 ATTGCATCAG
71868 CAATGACAACAT
1 CAATGACAACAT
71880 CAATGACAACAT
1 CAATGACAACAT
71892 CA
1 CA
71894 GTCCTAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.27, G:0.08, T:0.15
Consensus pattern (12 bp):
CAATGACAACAT
Done.