Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004410.1 Hibiscus syriacus cultivar Beakdansim tig00009665_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49300

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
576--604
10
2.7
11
94
5
51
44
20
31
3
1.68
576--629
21
2.6
21
80
13
58
42
20
31
5
1.75
607--654
9
5.1
9
75
9
51
37
25
33
4
1.75
598--679
29
2.8
30
92
5
134
35
28
30
6
1.81
882--937
24
2.3
24
90
0
94
37
16
16
30
1.90
3477--3632
65
2.4
64
84
3
206
30
18
22
28
1.97
7981--8052
2
36.0
2
100
0
144
50
0
0
50
1.00
9012--9132
58
2.1
59
95
1
217
23
9
14
52
1.71
12219--12252
16
2.1
16
100
0
68
38
17
17
26
1.92
12641--13131
200
2.4
201
85
3
641
32
12
11
43
1.78
14153--14245
20
4.7
20
93
0
150
30
15
19
35
1.92
14362--15149
200
3.9
200
81
3
832
33
12
14
39
1.84
14375--15652
399
3.3
389
79
8
1268
33
12
13
41
1.81
14981--15331
179
2.0
180
81
4
413
31
11
15
41
1.83
14781--15529
380
2.0
379
85
2
1031
32
11
13
41
1.81
15162--15652
200
2.4
201
82
3
585
33
11
11
43
1.76
17190--17218
6
4.8
6
100
0
58
51
13
0
34
1.42
19782--19821
18
2.2
18
86
8
55
32
7
30
30
1.85
20341--21144
180
4.2
187
80
8
567
34
12
12
39
1.81
21110--21165
21
2.7
21
97
0
103
48
14
12
25
1.78
21330--21368
21
1.9
20
94
5
69
43
10
10
35
1.73
20472--21569
201
5.4
201
78
8
1071
33
11
14
39
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23334--23406
38
1.9
38
94
0
128
47
8
20
23
1.76
31854--31886
11
2.8
12
90
4
50
42
15
3
39
1.62
33312--33430
20
5.9
20
70
5
69
27
13
13
45
1.81
41943--41974
14
2.2
15
94
5
57
43
15
6
34
1.72
43206--43253
16
3.1
15
83
13
62
31
2
2
64
1.16
46371--46457
35
2.5
34
80
12
97
55
9
8
27
1.60
48829--48859
10
3.1
10
95
0
53
35
0
32
32
1.58
49016--49135
50
2.4
50
81
2
125
21
24
34
20
1.97

Tables:   1

The End!