Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004411.1 Hibiscus syriacus cultivar Beakdansim tig00009666_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52053

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3473--3540
20
3.3
22
78
15
74
38
0
0
61
0.96
3482--3541
25
2.2
28
88
8
90
36
0
0
63
0.95
3473--3541
19
3.2
21
80
14
79
37
0
0
62
0.96
16307--16336
14
2.1
15
93
6
53
80
0
20
0
0.72
17912--18251
114
3.0
114
90
2
522
35
15
18
31
1.91
18954--19224
113
2.4
113
88
2
400
35
14
19
29
1.92
19139--19319
95
1.9
95
84
0
245
33
16
17
32
1.92
19234--19533
104
2.7
109
80
9
358
37
14
18
30
1.90
18939--19690
312
2.4
315
85
7
966
36
14
18
29
1.91
19542--19777
124
1.9
122
82
4
296
41
16
18
23
1.89
19915--19976
9
6.9
9
78
14
65
38
0
0
61
0.96
19916--19980
15
4.3
15
75
14
71
38
0
0
61
0.96
19912--19980
24
3.0
24
81
12
90
40
0
0
59
0.97
19916--19958
12
3.3
12
82
17
59
37
0
0
62
0.95
19914--19980
12
6.1
12
79
13
58
40
0
0
59
0.97
25990--26367
194
1.9
197
89
3
584
50
7
13
28
1.69
26475--26796
2
161.0
2
62
21
70
44
3
5
46
1.43
26482--26788
20
14.4
20
69
22
132
44
3
5
46
1.44
26480--26793
22
14.5
22
69
19
110
44
3
5
46
1.44
26651--26688
11
3.5
11
86
13
60
50
0
2
47
1.15
26482--26769
150
1.9
149
81
10
347
44
3
5
46
1.46
26656--26788
69
2.0
67
82
11
164
45
1
4
48
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27608--27643
13
2.8
13
91
4
56
33
0
2
63
1.08
26847--27629
6
132.0
6
96
2
1460
16
0
16
66
1.25
27651--27736
44
2.0
43
90
6
138
45
9
5
39
1.60
27709--27817
33
3.1
35
75
17
118
41
8
7
43
1.62
27746--27775
13
2.3
13
94
0
51
50
6
3
40
1.45
27693--27821
70
1.9
69
91
3
215
41
7
6
43
1.60
27693--27806
33
3.4
33
78
11
124
42
8
6
42
1.60
27722--27828
33
3.1
35
75
15
116
42
7
6
43
1.58
27758--27880
53
2.3
53
94
0
210
40
8
5
45
1.57
28116--28146
13
2.4
13
100
0
62
19
51
22
6
1.69
29243--29339
34
2.9
34
84
4
128
27
3
17
51
1.60
30719--30849
68
1.9
68
81
9
160
46
5
2
45
1.38
32549--32595
11
4.3
11
78
15
53
44
2
2
51
1.25
32549--32595
20
2.2
20
85
14
58
44
2
2
51
1.25
32829--32879
20
2.8
19
82
11
63
39
7
27
25
1.83
41961--41993
16
2.1
16
100
0
66
24
27
6
42
1.78
46395--46421
11
2.5
11
100
0
54
48
0
0
51
1.00
48289--49918
818
2.0
820
96
0
2980
31
18
18
32
1.95

Tables:   1

The End!