Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004412.1 Hibiscus syriacus cultivar Beakdansim tig00009674_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100983

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
204--347
54
2.6
53
82
5
171
31
19
22
26
1.97
812--843
13
2.3
15
89
10
50
46
0
15
37
1.46
901--950
21
2.4
21
93
0
82
20
10
30
40
1.85
933--1024
23
4.2
22
71
22
68
23
19
26
30
1.98
944--1004
23
2.7
23
84
5
79
21
21
26
31
1.98
3829--3881
27
2.0
27
96
0
97
28
30
3
37
1.75
5113--5144
15
2.1
16
94
5
57
53
25
3
18
1.59
7305--7365
23
2.7
23
86
0
86
27
27
24
19
1.99
7381--7598
103
2.1
103
94
0
382
36
22
13
27
1.92
12411--12467
23
2.5
23
79
0
69
28
22
22
26
1.99
12482--12703
102
2.2
103
92
1
383
37
23
12
26
1.90
20187--20266
42
1.9
42
92
0
133
52
5
6
36
1.48
21384--21441
28
2.1
28
93
0
98
17
13
12
56
1.66
25265--25330
10
6.8
9
75
16
60
18
27
25
28
1.98
25265--25323
20
2.9
21
85
7
86
18
27
23
30
1.98
25286--25374
10
9.3
10
68
25
59
15
28
29
26
1.96
25266--25330
30
2.2
29
86
13
89
16
27
26
29
1.97
25286--25372
19
4.6
20
84
7
94
16
26
29
27
1.96
25316--25374
9
6.3
9
75
7
55
15
27
30
27
1.96
25371--25413
22
2.0
22
100
0
86
18
48
23
9
1.76
25403--25433
7
4.4
7
100
0
62
16
29
29
25
1.96
32576--32650
10
7.8
9
78
14
69
17
26
26
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32597--32694
19
5.2
18
80
12
99
15
27
29
27
1.96
32576--32650
29
2.5
30
89
8
118
17
26
26
29
1.97
36927--37022
19
5.1
19
80
12
99
30
18
30
20
1.97
37019--37083
20
3.2
20
74
8
60
20
16
27
35
1.94
42145--42308
36
4.6
36
85
1
206
30
21
23
23
1.99
42146--42308
72
2.3
72
91
2
258
30
21
23
23
1.99
46978--47032
23
2.4
23
96
0
101
34
25
9
30
1.87
55375--55452
39
2.0
39
92
0
129
19
19
17
43
1.88
57981--58142
82
2.0
82
92
0
270
24
25
13
36
1.92
64021--64068
3
16.0
3
87
8
71
29
2
0
68
1.01
68895--69047
77
2.0
79
84
5
204
42
3
7
45
1.51
69665--69876
102
2.1
102
81
3
239
33
16
12
37
1.86
69862--70045
68
2.7
67
86
2
244
33
15
11
39
1.84
70043--70729
137
5.0
137
88
1
935
29
27
16
26
1.96
70042--70729
276
2.5
274
86
3
977
30
27
15
26
1.96
70043--70729
139
5.0
137
87
2
914
29
27
16
26
1.96
70924--70986
3
20.7
3
85
6
83
30
1
0
68
0.99
70924--70987
28
2.3
28
86
7
87
29
1
0
68
0.99
74224--74413
95
2.0
94
98
1
371
41
5
5
47
1.50
74834--74877
2
22.5
2
86
13
65
45
0
2
52
1.13
76006--76050
15
2.9
16
80
6
56
26
0
8
64
1.23
76007--76057
15
3.3
15
78
13
50
27
0
5
66
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76007--76056
16
3.2
16
76
21
52
26
0
6
68
1.13
76085--76137
18
2.9
18
81
13
56
20
3
0
75
0.96
86064--86101
18
2.1
18
90
0
58
39
18
13
28
1.88
86252--86339
37
2.4
37
83
7
108
26
12
17
44
1.84
87019--87365
118
3.0
118
84
4
420
40
15
20
23
1.91
87612--87845
118
2.0
117
83
4
292
38
16
21
23
1.93
87891--87967
40
1.9
40
83
0
100
28
25
19
25
1.99
91460--91531
17
4.2
17
92
0
108
8
23
23
44
1.80
92093--92118
3
8.7
3
100
0
52
30
0
0
69
0.89
95807--95849
13
3.3
13
81
12
52
79
0
16
4
0.90
95812--95860
11
4.5
12
82
14
54
73
0
22
4
1.00
100197--100248
15
3.4
14
82
15
59
78
3
9
7
1.06
100243--100309
22
2.7
25
75
17
68
71
2
22
2
1.13
100263--100305
23
1.9
22
85
4
59
69
4
25
0
1.07

Tables:   1

The End!