Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004413.1 Hibiscus syriacus cultivar Beakdansim tig00009677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60799

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1465--1497
9
3.8
9
84
8
50
54
0
0
45
0.99
3175--3251
3
26.7
3
85
7
106
61
0
2
36
1.10
11496--11605
21
5.3
21
65
4
80
21
15
25
37
1.93
11496--11602
41
2.6
41
89
0
169
21
15
25
37
1.93
12363--12431
19
3.5
19
73
11
75
39
21
20
18
1.93
12363--12452
41
2.2
41
100
0
180
37
23
20
18
1.94
12381--12452
22
3.4
22
73
11
87
37
25
19
18
1.94
13659--13691
16
2.0
17
88
5
50
30
0
0
69
0.88
20368--20413
22
2.0
23
87
4
67
39
6
2
52
1.40
21840--21916
20
3.8
20
89
5
109
35
11
23
29
1.90
23440--23478
20
2.0
20
89
0
60
28
0
23
48
1.51
24001--24075
37
2.0
37
100
0
150
45
2
17
34
1.62
24732--24796
23
2.8
23
83
0
85
20
26
23
30
1.98
25953--26030
21
3.7
21
72
6
68
30
14
12
42
1.83
26061--26101
21
2.0
21
90
0
64
19
21
26
31
1.97
28920--28953
17
2.1
17
88
5
52
2
11
20
64
1.39
32031--32082
24
2.2
24
82
0
59
11
15
25
48
1.78
32052--32082
14
2.2
14
94
0
53
9
12
22
54
1.67
32041--32102
24
2.6
24
89
5
90
12
12
19
54
1.70
32825--32915
10
9.7
10
65
25
56
9
12
20
57
1.63
32831--32919
16
5.7
16
93
2
137
10
11
20
58
1.61
35485--35525
21
2.0
21
90
0
64
29
26
29
14
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39003--39145
73
2.0
73
98
0
277
29
20
23
26
1.99
46582--46741
60
2.7
60
82
3
187
33
18
5
41
1.74
46908--47035
60
2.1
60
82
2
150
42
7
17
31
1.78
46908--47051
60
2.4
60
81
4
148
42
7
20
29
1.79
49058--49202
60
2.4
60
79
5
152
41
6
19
33
1.76
52599--52630
2
16.0
2
100
0
64
50
0
0
50
1.00
60448--60671
72
3.2
67
81
13
215
45
4
5
44
1.46
60448--60685
34
6.8
36
78
14
200
44
4
5
44
1.47
60595--60763
32
5.2
32
78
11
148
43
2
5
48
1.40

Tables:   1

The End!