genome.fa.s4414.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004414.1 Hibiscus syriacus cultivar Beakdansim tig00009679_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56552

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107--154	18	2.7	18	93	0	87	14	12	45	27	1.81
1449--1507	20	3.0	20	87	0	73	42	22	18	16	1.89
1758--1805	21	2.3	21	89	3	71	25	12	39	22	1.89
1765--1807	21	2.0	21	95	0	77	20	13	41	23	1.88
1973--2110	41	3.4	41	75	2	152	23	15	23	36	1.93
1993--2106	20	5.7	20	74	6	95	24	15	25	34	1.95
2096--2167	20	3.5	20	88	3	99	19	23	18	38	1.93
2095--2182	41	2.1	41	78	0	95	23	21	19	35	1.96
2157--2209	21	2.5	22	81	6	74	33	18	26	20	1.96
2700--2740	22	1.9	21	90	5	64	70	2	0	26	0.99
3193--3227	16	2.2	16	90	5	54	17	11	17	54	1.71
4454--4875	180	2.4	180	89	3	631	28	15	12	43	1.83
4749--5199	112	4.1	112	88	5	645	25	14	14	45	1.83
5675--5787	60	1.9	60	87	3	165	36	21	3	38	1.71
5753--5841	29	3.1	28	76	7	81	35	21	5	37	1.77
6336--6382	2	24.0	2	86	4	69	51	2	0	46	1.13
11251--11283	14	2.4	14	94	0	57	33	6	30	30	1.82
15846--15915	17	4.1	17	76	16	74	54	1	0	44	1.09
15845--15933	19	5.1	17	75	17	76	53	2	0	43	1.13
15850--15952	47	2.3	44	80	14	113	50	2	0	45	1.23
15847--16069	13	17.1	13	70	18	126	48	4	3	43	1.40
15847--16049	80	2.6	78	87	6	272	49	3	3	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16042--16190	75	2.0	76	86	5	212	47	3	5	43	1.42
16517--16593	2	40.0	2	92	7	133	50	0	0	49	1.00
16694--16734	20	2.0	21	90	4	66	51	26	0	21	1.48
16786--16818	14	2.4	14	100	0	66	24	0	24	51	1.48
16869--16916	12	3.9	12	83	2	60	27	0	10	62	1.27
16884--16918	6	5.8	6	93	0	61	31	0	2	65	1.07
16987--17297	20	15.7	19	72	17	115	42	9	5	42	1.61
16999--17104	18	5.7	18	80	12	106	43	8	7	40	1.63
16930--17022	44	2.1	44	80	7	109	43	5	3	48	1.42
17164--17297	2	62.0	2	69	19	65	41	8	4	46	1.54
16987--17297	59	5.2	58	75	14	221	42	9	5	42	1.61
17227--17296	27	2.5	28	82	13	90	42	8	1	47	1.43
17512--17552	13	3.2	12	86	10	55	48	41	0	9	1.36
17517--17559	13	3.3	12	81	15	50	48	34	0	16	1.46
20200--20291	10	8.8	10	73	14	62	0	19	28	52	1.47
20204--20292	20	4.6	20	76	15	89	0	19	28	52	1.46
20226--20280	24	2.3	24	80	0	65	0	20	27	52	1.46
20728--20779	23	2.3	22	80	9	61	38	3	1	55	1.29
21134--21194	16	3.8	16	80	8	61	49	9	19	21	1.77
31180--31234	19	2.6	21	80	16	60	56	0	3	40	1.17
31180--31236	22	2.7	22	74	15	57	54	0	3	42	1.17
31198--31268	31	2.3	31	82	2	90	50	0	2	46	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32218--32395	2	94.5	2	68	24	77	41	2	5	51	1.36
32217--32395	7	25.9	7	67	21	85	40	2	5	51	1.36
32218--32378	24	7.5	23	69	20	91	41	2	4	50	1.37
32218--32389	39	4.7	35	70	16	107	41	2	4	51	1.35
32331--32388	13	4.8	12	83	12	66	37	0	1	60	1.07
32333--32402	25	2.8	25	79	10	74	37	0	4	58	1.18
32330--32421	27	3.4	26	75	11	78	36	0	6	56	1.25
32345--32409	17	3.8	16	80	19	60	36	0	6	56	1.24
36485--36576	24	3.8	24	79	11	107	28	15	17	39	1.90
36788--36832	2	22.5	2	95	0	81	46	0	0	53	1.00
41723--41838	24	4.8	24	85	10	148	24	16	21	37	1.93
48394--48492	39	2.7	36	92	6	155	14	30	34	21	1.93
53510--53593	29	3.0	28	76	10	107	35	3	7	53	1.46
53504--53619	29	3.9	29	76	12	101	37	3	5	53	1.40
53561--53621	20	3.3	20	68	25	62	39	3	3	54	1.33
53714--53790	27	2.8	29	75	15	90	45	3	0	50	1.20
53662--53800	54	2.4	58	80	12	155	45	5	0	48	1.29
53714--53790	26	2.8	26	73	13	75	45	3	0	50	1.20
54924--54996	37	2.0	37	94	2	130	15	30	35	19	1.92
56334--56404	30	2.4	29	92	2	115	32	25	18	23	1.97
56334--56412	30	2.7	30	88	5	99	34	25	17	22	1.96
56396--56510	31	3.8	32	75	16	95	30	20	18	30	1.96

Tables:   1

The End!