genome.fa.s4415.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004415.1 Hibiscus syriacus cultivar Beakdansim tig00009680_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108947

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1225--1263	19	2.1	18	85	9	51	28	0	7	64	1.21
5137--5192	24	2.3	24	90	0	85	37	19	17	25	1.94
7079--7130	22	2.4	22	80	6	61	26	13	9	50	1.72
7259--7306	23	2.1	23	84	0	60	52	4	2	41	1.32
18293--18362	22	3.2	22	97	0	131	25	17	34	22	1.96
18611--18638	14	2.0	14	100	0	56	50	7	0	42	1.30
21770--21807	18	2.1	19	90	5	60	42	10	13	34	1.78
22028--22066	17	2.4	17	95	4	71	43	0	5	51	1.24
23858--23898	20	2.0	20	85	9	55	53	7	9	29	1.60
25429--25453	12	2.1	12	100	0	50	60	0	0	40	0.97
27010--27068	3	19.7	3	76	13	59	64	0	5	30	1.15
27010--27071	16	4.1	16	77	10	60	64	0	4	30	1.14
27010--27068	25	2.4	25	81	10	70	64	0	5	30	1.15
27146--27202	17	3.5	17	71	9	64	50	7	0	42	1.29
27107--27205	32	3.1	32	86	4	119	48	6	0	45	1.27
27206--27251	24	1.9	24	100	0	92	50	2	0	47	1.13
27229--27399	39	4.4	38	74	10	148	46	4	4	45	1.43
27230--27404	78	2.3	76	85	5	228	45	4	4	46	1.42
27358--27428	31	2.3	30	83	7	97	46	5	5	42	1.51
27963--28582	84	7.5	84	80	6	658	23	20	26	29	1.99
27961--28582	249	2.5	247	83	5	722	23	20	26	30	1.99
27963--28582	165	3.7	165	92	1	949	23	20	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31975--32020	19	2.4	19	96	0	83	69	8	10	10	1.37
33695--33719	12	2.1	12	100	0	50	60	0	0	40	0.97
35279--35337	3	19.7	3	76	13	59	64	0	5	30	1.15
35279--35340	16	4.1	16	77	10	60	64	0	4	30	1.14
35279--35337	25	2.4	25	81	10	70	64	0	5	30	1.15
35376--35482	32	3.4	31	81	12	119	50	5	0	43	1.25
35415--35471	17	3.5	17	72	18	66	52	7	0	40	1.28
35444--35533	37	2.5	36	80	8	85	47	6	1	44	1.36
35488--35699	39	5.5	38	75	10	175	42	5	4	47	1.46
35491--35689	78	2.5	77	83	5	238	43	5	4	47	1.45
35931--35964	7	4.9	7	89	10	52	55	0	0	44	0.99
35934--35958	13	1.9	13	100	0	50	60	0	0	40	0.97
37424--37502	34	2.4	33	83	8	90	37	1	1	59	1.14
37630--37706	6	12.8	6	100	0	154	33	0	15	50	1.44
37708--37761	17	3.2	17	72	0	54	31	0	3	64	1.11
39343--39415	21	3.5	21	87	7	103	19	34	26	20	1.96
39936--40041	34	3.1	34	86	0	149	54	3	3	37	1.36
40395--40884	128	3.8	128	95	1	885	32	22	23	21	1.98
40395--40884	255	1.9	256	95	1	894	32	22	23	21	1.98
46027--46153	51	2.5	51	86	7	161	17	31	29	21	1.96
50003--50045	12	3.6	12	90	0	68	11	32	20	34	1.89
49989--50045	6	9.5	6	80	0	60	15	33	17	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51886--52106	110	2.0	111	92	2	374	45	9	8	36	1.67
52162--52216	17	3.3	16	80	12	58	60	0	5	34	1.20
52160--52216	16	3.4	17	77	20	66	59	0	5	35	1.20
52396--52509	51	2.2	51	87	3	158	19	30	34	15	1.93
53405--53438	17	1.9	17	88	5	50	17	14	11	55	1.68
55554--55588	13	2.7	13	100	0	70	5	14	42	37	1.69
62674--62722	19	2.6	19	76	0	53	63	2	2	32	1.17
62940--62990	14	3.6	14	77	12	52	66	0	5	27	1.14
64079--64131	3	17.7	3	80	7	54	60	0	0	39	0.97
64092--64140	12	3.9	12	76	10	53	65	0	0	34	0.93
64686--64822	40	3.5	40	95	1	240	18	24	9	48	1.77
64763--65845	113	9.6	112	74	10	795	27	19	14	38	1.91
65101--65200	40	2.5	40	100	0	200	19	24	10	47	1.79
64986--65274	153	1.9	155	90	2	467	26	19	14	39	1.90
66263--66317	22	2.5	22	87	0	83	36	14	14	34	1.87
73828--73881	14	3.8	14	80	2	54	53	9	12	24	1.68
75445--75494	16	3.2	15	83	8	64	76	0	2	22	0.89
76287--76320	2	17.0	2	87	0	50	44	0	0	55	0.99
76320--76384	12	5.5	11	77	15	51	66	1	4	27	1.20
76321--76362	15	2.9	15	89	10	61	69	0	4	26	1.08
76321--76362	3	14.3	3	80	14	52	69	0	4	26	1.08
77687--77754	3	22.7	3	85	5	84	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80147--80171	2	12.5	2	100	0	50	52	0	0	48	1.00
85336--85450	35	3.3	35	83	1	131	41	20	0	36	1.59
87215--87326	35	3.2	35	88	0	161	34	0	23	41	1.61
89868--89894	2	13.5	2	100	0	54	51	0	0	48	1.00
90903--90982	12	6.5	11	74	25	56	55	1	2	41	1.21
90903--90983	7	12.0	7	74	18	66	54	1	2	41	1.21
90916--90999	19	4.4	20	77	11	79	54	1	2	41	1.21
91005--91070	27	2.6	25	81	15	73	43	3	6	46	1.43
91395--91499	2	55.0	2	66	25	50	55	3	0	40	1.25
91395--91502	21	5.5	19	75	22	91	55	3	0	39	1.24
91429--91517	30	3.1	29	74	19	78	57	2	2	38	1.24
91414--91499	34	2.5	34	80	14	95	56	2	1	39	1.19
91459--91511	25	2.1	26	89	10	83	58	3	0	37	1.16
91678--91735	24	2.4	24	88	0	98	44	10	6	37	1.65
101497--101536	12	3.3	12	78	0	53	30	10	12	47	1.74
101485--101573	24	3.7	24	89	0	133	30	10	15	43	1.80

Tables:   1

The End!