genome.fa.s4416.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004416.1 Hibiscus syriacus cultivar Beakdansim tig00009682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91908

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26--58	15	2.2	15	94	0	57	15	21	33	30	1.94
948--979	2	16.0	2	100	0	64	50	0	0	50	1.00
967--1041	37	2.1	36	82	12	91	54	9	4	32	1.51
1399--1497	3	34.3	3	68	22	52	63	2	4	30	1.24
1444--1490	17	2.7	17	87	9	60	61	4	2	31	1.27
1846--1948	37	2.8	37	86	0	143	29	13	14	42	1.84
2490--2935	105	4.3	105	88	3	625	22	19	25	32	1.97
2490--2932	205	2.1	210	87	3	637	22	19	25	33	1.97
2874--2978	43	2.4	43	92	3	176	20	20	23	34	1.97
2883--2952	21	3.3	21	66	18	63	21	17	25	35	1.95
2917--3158	105	2.3	106	92	0	405	22	17	25	34	1.96
2769--3083	148	2.1	148	94	0	558	21	18	26	33	1.96
3363--3438	36	2.1	36	92	0	125	42	15	19	22	1.89
3559--3633	39	1.9	39	83	0	96	37	13	21	28	1.91
3338--3656	105	3.1	104	91	2	509	37	12	19	30	1.89
3783--3895	36	3.1	36	74	9	115	44	9	17	28	1.81
3730--3900	72	2.3	74	86	7	224	42	12	18	26	1.85
5041--5577	183	2.9	183	96	0	968	30	21	20	27	1.98
11262--11304	18	2.5	17	85	7	61	67	2	4	25	1.22
11190--11305	58	2.1	54	79	16	139	63	2	3	30	1.24
11661--11765	37	2.8	38	84	4	133	28	14	14	42	1.84
13988--14020	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14710--14754	20	2.2	20	84	8	54	42	11	2	44	1.52
19512--19559	19	2.5	19	93	0	78	20	25	22	31	1.98
23206--23275	27	2.6	27	97	0	131	22	21	21	34	1.97
31196--31292	24	4.2	24	75	10	85	59	14	11	14	1.61
31197--31284	44	2.0	44	86	0	122	57	14	12	14	1.65
35559--35600	21	2.0	21	95	0	75	28	11	9	50	1.70
35589--35665	33	2.4	32	85	8	111	32	9	12	45	1.74
35911--35952	21	2.0	22	90	4	68	16	26	21	35	1.94
39572--39630	22	2.7	22	91	0	100	47	22	8	22	1.77
47380--47732	134	2.6	134	92	0	589	25	18	30	25	1.98
47740--47847	28	3.9	28	91	2	155	45	16	14	23	1.84
47984--48150	36	4.7	34	76	14	133	37	12	14	34	1.85
47984--48150	73	2.3	69	85	7	210	37	12	14	34	1.85
48013--48155	37	3.9	36	79	8	144	37	11	13	37	1.81
48371--48793	107	4.0	107	88	3	595	41	10	15	32	1.82
50408--50486	11	6.2	12	76	15	63	1	16	8	73	1.15
51727--51778	21	2.5	22	78	9	54	63	7	5	23	1.43
54518--54796	139	2.0	140	95	0	506	51	8	13	25	1.71
56356--56405	3	15.7	3	84	15	57	72	0	0	28	0.86
56354--56408	10	5.6	10	85	14	71	70	0	0	29	0.87
56356--56408	13	4.1	13	92	7	90	71	0	0	28	0.86
56356--56401	16	2.8	17	87	12	69	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57282--57333	17	3.0	18	83	8	72	30	0	0	69	0.89
57470--57529	23	2.7	22	80	12	68	5	10	10	75	1.19
58068--58188	49	2.4	51	83	2	147	52	17	6	23	1.68
58297--58370	24	2.9	25	70	9	69	56	1	2	39	1.22
59837--59867	4	7.8	4	92	0	53	29	0	22	48	1.51
62832--62905	30	2.5	30	88	4	114	21	9	13	55	1.66
63159--63188	6	5.0	6	91	0	51	13	0	36	50	1.42
64106--64137	2	16.0	2	100	0	64	50	0	0	50	1.00
65280--65356	25	3.1	25	66	14	68	38	0	3	57	1.17
71126--71228	30	3.4	30	94	0	170	32	23	19	25	1.98
71126--71251	60	2.1	61	84	1	164	33	23	19	23	1.97
71839--71890	2	26.5	2	96	3	97	51	0	0	48	1.00
72369--72445	20	3.7	20	79	14	75	24	24	23	27	2.00
72434--72535	45	2.3	45	86	5	136	25	20	19	34	1.96
75962--76034	30	2.4	30	95	0	128	30	24	20	24	1.99
76659--76772	2	58.5	2	94	5	207	50	0	0	50	1.00
77292--77411	64	1.9	63	84	5	161	25	22	17	34	1.96
80496--80543	14	3.2	14	78	21	53	39	2	4	54	1.32
80493--80543	17	3.2	16	76	18	61	41	1	3	52	1.31
81088--81163	31	2.6	29	82	10	84	42	6	5	46	1.52
81283--81356	30	2.6	29	85	6	96	52	2	0	44	1.15
81466--81507	20	2.1	20	100	0	84	33	23	23	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86034--86093	3	20.0	3	100	0	120	66	0	0	33	0.92

Tables:   1

The End!