genome.fa.s4417.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004417.1 Hibiscus syriacus cultivar Beakdansim tig00009685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97863

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1471--1591	59	2.1	58	84	4	154	33	19	5	41	1.75
1750--1877	60	2.1	60	82	2	150	42	7	17	31	1.78
3876--4015	60	2.4	59	79	7	151	42	6	19	32	1.76
3858--4018	59	2.7	59	79	9	152	42	6	19	31	1.76
7375--7404	2	15.0	2	100	0	60	50	0	0	50	1.00
15208--15473	38	7.2	37	83	7	276	45	4	6	44	1.47
15450--15539	33	2.8	32	86	8	128	44	3	5	46	1.43
15605--15660	10	5.2	10	83	12	67	26	1	1	69	1.08
15594--15654	13	4.9	12	76	13	52	29	0	1	68	0.99
16914--16962	22	2.2	23	85	3	64	10	20	2	67	1.30
16944--16980	19	1.9	19	88	0	56	16	13	0	70	1.17
17048--17107	24	2.5	25	86	8	79	11	8	5	75	1.19
17054--17107	12	4.5	11	76	15	54	9	7	5	77	1.11
22332--23205	84	10.5	83	77	5	760	30	24	19	25	1.98
22348--23070	165	4.3	164	80	6	460	29	24	19	25	1.99
22375--23091	249	2.9	248	85	2	938	29	25	20	25	1.99
22348--23202	333	2.6	333	82	3	995	30	24	20	25	1.98
23782--24079	38	8.2	38	83	7	311	44	4	6	44	1.48
24062--24127	19	3.6	19	71	8	64	39	1	7	51	1.40
24062--24135	36	2.1	36	89	5	114	37	2	6	52	1.42
24212--24275	3	20.0	3	78	15	58	28	1	1	68	1.07
24212--24275	13	5.0	13	83	12	80	28	1	1	68	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24199--24265	17	4.0	17	81	14	68	31	0	1	67	1.00
24212--24281	10	7.2	10	80	15	67	27	2	1	68	1.12
24212--24265	17	3.2	16	87	10	72	29	0	1	68	1.00
25715--25739	13	1.9	13	100	0	50	4	8	8	80	1.03
28847--28905	24	2.4	25	85	2	75	49	3	8	38	1.50
30207--30240	18	1.9	18	88	5	52	55	8	0	35	1.31
33740--33806	20	3.4	19	78	12	73	20	2	2	73	1.10
33753--33800	19	2.6	18	77	9	51	20	4	2	72	1.11
39058--39778	84	8.7	83	78	6	674	30	24	20	24	1.99
39058--39761	165	4.3	164	81	7	656	30	24	20	24	1.98
39179--39761	249	2.3	248	89	1	862	30	25	20	24	1.98
39181--39845	165	4.0	163	81	6	480	31	24	20	24	1.98
40766--40795	12	2.5	12	94	0	51	16	36	0	46	1.47
41998--42043	2	23.0	2	100	0	92	50	0	0	50	1.00
43523--43561	11	3.2	12	85	14	53	41	0	2	56	1.13
56062--56137	5	15.2	5	75	13	50	36	2	1	59	1.20
61125--61219	30	3.1	30	90	1	145	21	4	37	36	1.73
63996--64071	39	1.9	39	86	5	109	36	13	17	32	1.88
64089--64150	24	2.6	24	94	0	106	9	12	25	51	1.70
64088--64143	14	4.3	14	78	17	75	8	14	26	50	1.72
64089--64163	24	3.1	24	90	0	87	12	12	22	53	1.70
65236--65302	16	4.3	16	92	3	102	10	10	19	59	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65234--65294	32	1.9	32	96	0	113	8	13	22	55	1.64
65366--65396	16	1.9	16	93	0	53	9	12	19	58	1.62
79841--79900	3	19.7	3	74	16	52	58	0	1	40	1.08
79841--79902	14	4.7	14	76	11	69	58	0	1	40	1.08
80046--80179	20	6.7	20	77	0	133	30	18	23	26	1.98
80046--80179	40	3.3	40	89	0	205	30	18	23	26	1.98
80243--80297	20	2.8	20	82	0	65	29	20	21	29	1.98
80362--80410	20	2.5	20	89	0	71	26	22	26	24	2.00
80126--80571	120	3.8	119	93	1	734	33	17	16	31	1.93
80482--80524	20	2.2	20	86	0	59	30	25	18	25	1.98
90220--90288	20	3.4	19	75	21	61	56	0	2	40	1.14
94382--94406	13	1.9	13	100	0	50	44	0	0	56	0.99
94104--94472	174	2.1	176	87	4	532	45	9	3	41	1.54
97367--97427	23	2.7	23	81	0	77	44	8	16	31	1.77
97735--97782	19	2.5	20	93	3	80	37	16	6	39	1.74

Tables:   1

The End!