genome.fa.s4418.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004418.1 Hibiscus syriacus cultivar Beakdansim tig00009689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147796

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--69	35	1.9	35	87	0	98	29	8	14	46	1.76
3708--3751	22	2.0	22	86	4	63	54	2	0	43	1.12
19214--19269	21	2.7	21	86	8	78	67	0	1	30	1.01
23374--23419	24	1.9	24	95	0	83	6	23	21	47	1.74
24906--24939	17	1.9	18	94	5	61	26	5	11	55	1.58
25051--25107	29	1.9	30	86	10	82	52	19	10	17	1.73
25434--25494	24	2.6	23	81	2	68	49	18	19	13	1.79
25429--25502	23	3.1	23	77	9	69	50	16	18	14	1.79
27664--27723	29	2.0	30	90	3	95	48	15	13	23	1.79
36298--36378	26	3.1	27	81	11	91	44	0	1	54	1.08
36328--36412	38	2.2	37	83	12	100	44	0	1	54	1.07
36277--36425	64	2.4	64	92	5	243	41	0	2	56	1.11
36462--36499	20	1.9	20	84	10	51	34	0	2	63	1.09
37114--37166	23	2.3	23	86	0	70	28	18	26	26	1.98
53571--53623	21	2.5	21	93	0	88	28	28	22	20	1.99
53819--53873	13	4.2	13	75	13	58	49	12	3	34	1.59
53859--53957	33	3.0	33	94	1	164	45	15	7	32	1.73
53952--53991	21	1.9	21	94	0	71	47	7	15	30	1.72
56990--57045	15	3.6	15	74	9	58	42	10	12	33	1.77
56993--57043	17	3.1	17	72	11	52	43	9	9	37	1.71
57212--57268	21	2.7	21	91	0	96	24	24	28	22	2.00
57491--57589	33	3.0	33	94	1	164	45	15	7	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57584--57623	21	1.9	21	94	0	71	47	7	15	30	1.72
59929--59974	12	3.6	12	81	16	56	17	19	17	45	1.85
59928--59967	15	2.9	14	85	14	57	20	17	15	47	1.83
60059--60117	28	2.1	28	81	12	68	22	16	11	49	1.78
60185--60231	18	2.7	18	93	3	78	21	6	38	34	1.79
60687--60749	3	21.7	3	81	12	78	36	0	1	61	1.05
60687--60749	19	3.1	22	82	13	73	36	0	1	61	1.05
61040--61081	20	2.1	20	100	0	84	47	0	38	14	1.44
66838--67043	102	2.0	102	89	0	313	48	6	8	35	1.61
67570--67652	43	2.0	43	85	2	114	50	6	16	26	1.68
68729--68767	10	3.9	10	89	0	60	30	30	0	38	1.58
70602--70668	33	2.0	33	82	5	82	17	40	17	23	1.91
75700--75787	33	2.8	31	75	11	90	52	2	6	38	1.41
75799--75852	25	2.2	25	83	9	76	57	1	3	37	1.27
77705--77757	3	18.0	3	84	11	74	32	0	0	67	0.91
81498--81538	14	2.9	14	85	3	55	14	19	4	60	1.51
81596--81636	6	6.7	6	83	5	55	26	14	4	53	1.61
81596--81630	13	2.8	13	95	4	63	25	14	5	54	1.62
81584--81637	19	2.8	19	85	2	72	27	16	3	51	1.61
84393--84503	16	6.9	17	74	21	71	79	0	18	1	0.88
84392--84503	14	8.0	13	74	19	66	79	0	17	1	0.87
84400--84497	11	8.9	10	72	24	65	79	1	17	2	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84400--84489	23	3.9	23	77	10	76	80	1	16	2	0.88
84392--84498	46	2.4	46	77	17	118	78	0	18	1	0.90
84396--84503	8	12.2	9	73	20	61	79	0	17	1	0.87
86642--86861	114	1.9	114	86	1	316	35	15	17	31	1.91
89343--89397	22	2.5	22	90	0	92	38	5	16	40	1.72
90075--90256	76	2.4	76	87	1	258	25	19	20	34	1.96
90272--90572	113	2.7	113	97	1	568	37	14	21	26	1.92
90513--90612	40	2.5	40	95	3	175	47	10	23	20	1.80
90400--90725	153	2.1	153	94	2	575	39	13	21	25	1.90
90287--90837	266	2.1	265	93	2	937	38	14	20	26	1.91
90553--91663	113	9.7	112	86	5	1148	38	14	18	28	1.90
91323--91750	123	3.5	123	94	0	732	41	15	17	26	1.88
91323--91807	123	4.0	118	86	6	605	40	15	17	26	1.89
91999--92059	3	20.0	3	84	15	81	32	0	0	67	0.91
103308--103352	2	22.5	2	95	0	81	48	2	0	48	1.13
111466--111623	81	2.0	81	93	0	271	15	31	22	31	1.95
111739--112037	54	5.5	54	80	5	316	24	26	22	26	2.00
111742--112037	111	2.7	109	83	3	353	24	26	22	26	2.00
115231--115281	27	2.0	25	85	14	68	70	0	7	21	1.12
115303--115372	32	2.3	31	87	9	99	45	7	2	44	1.46
127384--127444	21	2.9	21	97	0	113	22	22	27	26	1.99
130328--130365	19	2.1	18	90	5	58	44	5	7	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130646--130720	31	2.4	31	84	0	96	38	12	21	28	1.89
134245--134324	31	2.6	31	80	7	90	32	23	7	36	1.83

Tables:   1

The End!