Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004419.1 Hibiscus syriacus cultivar Beakdansim tig00009690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55122

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
615--639
12
2.1
12
100
0
50
44
0
8
48
1.32
1121--1515
158
2.5
156
81
3
463
29
17
6
46
1.74
2584--2721
64
2.2
64
88
5
199
29
18
21
29
1.97
3325--3401
2
38.5
2
100
0
154
50
0
0
49
1.00
4908--4959
2
26.0
2
100
0
104
50
0
0
50
1.00
5419--5501
23
3.7
23
73
9
82
26
20
26
26
1.99
6620--6713
30
3.1
30
98
0
179
34
23
18
24
1.96
6715--6803
32
2.8
32
76
20
105
33
17
19
29
1.95
7681--7725
21
2.1
21
87
0
63
15
24
28
31
1.96
10537--10630
30
3.1
30
95
0
170
30
24
20
24
1.98
10619--10716
31
3.2
30
78
13
117
32
18
19
29
1.96
11595--11639
21
2.1
21
83
0
54
15
22
31
31
1.95
18916--19020
46
2.3
46
83
3
122
37
14
17
31
1.89
30827--30900
33
2.3
32
83
4
94
21
9
22
45
1.80
30845--30965
32
3.8
32
75
5
118
25
10
23
40
1.87
33361--33429
23
3.0
23
82
0
93
36
26
21
15
1.94
33900--33928
2
14.5
2
100
0
58
48
0
0
51
1.00
35047--35208
64
2.5
64
82
4
193
24
23
19
33
1.97
37566--37613
20
2.4
20
100
0
96
31
14
14
39
1.86
40187--40280
20
4.9
20
82
7
124
26
29
22
21
1.99
40187--40277
38
2.4
38
88
0
146
26
30
21
20
1.98
43462--43491
14
2.1
14
93
0
51
43
0
16
40
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44039--44112
32
2.3
32
85
0
94
16
14
24
44
1.85
44161--44202
16
2.7
16
88
3
59
9
11
38
40
1.75
45241--45292
23
2.3
22
77
9
52
40
1
3
53
1.30
49680--49706
2
13.5
2
100
0
54
0
48
0
51
1.00
49706--49756
2
25.5
2
100
0
102
49
0
0
50
1.00
52013--52161
74
2.1
70
93
5
253
36
15
18
28
1.92

Tables:   1

The End!