genome.fa.s4423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004423.1 Hibiscus syriacus cultivar Beakdansim tig00009700_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50723

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7099--7150	18	2.9	18	78	18	56	63	1	0	34	1.06
14627--14711	19	4.7	20	75	18	69	38	23	12	24	1.90
14627--14710	20	4.6	19	74	18	72	38	23	13	25	1.91
14764--14825	27	2.3	27	97	0	115	40	32	3	24	1.71
18259--18352	34	2.8	34	88	0	134	40	19	21	19	1.92
18332--18372	20	2.0	20	90	0	64	46	21	17	14	1.84
18488--18537	25	2.0	25	96	0	91	26	8	22	44	1.80
19262--19348	39	2.2	39	87	0	138	47	17	14	20	1.83
19551--19588	20	1.9	20	100	0	76	13	18	26	42	1.87
21148--21224	21	3.7	21	73	13	77	20	19	36	23	1.95
21142--21234	42	2.2	42	90	3	143	22	16	36	24	1.94
21640--21687	21	2.3	21	96	0	87	35	29	18	16	1.93
23442--23473	13	2.5	13	94	0	55	78	12	6	3	1.06
23691--23733	22	2.0	22	90	0	68	25	13	37	23	1.92
23865--23928	20	3.2	20	88	4	94	18	18	25	37	1.94
23956--24024	20	3.5	19	80	11	77	24	14	33	27	1.94
25346--25378	16	2.1	16	88	5	50	60	3	0	36	1.12
29025--29311	143	2.0	143	88	5	425	35	6	9	47	1.63
30023--30147	18	6.9	18	91	0	196	29	32	19	19	1.96
37289--37382	35	2.7	34	80	9	93	30	2	25	41	1.67
37305--37382	35	2.3	33	84	8	95	34	1	21	42	1.61
42664--42775	31	3.6	31	84	3	127	38	11	21	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44989--45018	15	1.9	16	93	6	53	40	0	10	50	1.36
46508--46553	11	4.5	10	89	10	67	17	2	19	60	1.46
46498--46550	21	2.5	21	82	11	72	18	1	20	58	1.49
46495--46550	10	5.4	11	87	8	73	19	1	21	57	1.50
48098--48159	10	6.0	11	83	7	69	17	3	20	58	1.53
48117--48162	11	4.5	10	84	10	58	17	4	19	58	1.55
48117--48162	21	2.2	20	88	3	65	17	4	19	58	1.55

Tables:   1

The End!