genome.fa.s4424.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004424.1 Hibiscus syriacus cultivar Beakdansim tig00009702_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76728

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2361--2386	12	2.2	12	100	0	52	23	7	46	23	1.78
7691--7737	7	6.6	7	90	2	67	78	4	17	0	0.90
10325--10354	14	2.1	14	93	0	51	63	0	0	36	0.95
10900--10939	2	20.0	2	100	0	80	50	0	0	50	1.00
13750--13786	2	18.5	2	94	0	65	48	2	48	0	1.15
15054--15167	59	1.9	60	82	8	144	30	25	6	37	1.80
15959--15986	3	9.3	3	100	0	56	0	35	0	64	0.94
16585--16615	16	1.9	16	93	0	53	67	0	9	22	1.19
16593--16630	20	1.9	20	89	10	60	71	0	7	21	1.11
16713--16762	26	1.9	26	84	15	68	68	0	12	20	1.21
17077--17110	2	17.0	2	100	0	68	50	0	0	50	1.00
17727--17778	26	2.0	26	100	0	104	53	11	3	30	1.54
19574--19610	3	12.0	3	94	5	65	32	0	2	64	1.07
19574--19622	22	2.3	21	89	10	73	30	0	4	65	1.11
21008--21102	30	3.2	29	77	8	77	18	13	11	55	1.68
21002--21132	29	4.5	28	72	19	67	21	12	9	56	1.64
27196--27303	38	2.9	35	82	8	117	33	19	12	34	1.90
27321--27379	21	3.1	21	68	27	67	32	18	8	40	1.81
27359--27555	104	1.9	105	84	3	263	35	16	10	38	1.82
27733--27910	92	2.0	92	86	2	252	32	11	15	41	1.82
27822--27886	31	2.1	31	91	2	105	41	9	12	36	1.75
27671--27891	120	1.8	123	83	9	301	29	11	15	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27953--28169	120	1.8	118	83	7	287	29	16	14	40	1.87
28138--28229	36	2.6	35	77	8	96	27	17	14	41	1.88
28405--28469	28	2.3	28	86	5	96	23	10	15	50	1.75
28645--28876	41	5.5	40	77	15	177	27	28	18	25	1.98
28645--28786	41	3.5	41	90	4	209	27	28	19	24	1.98
29082--29122	3	13.0	3	94	5	64	31	0	4	63	1.15
30520--30650	29	4.5	28	72	17	74	22	12	9	55	1.65
35811--35971	21	7.7	21	86	8	213	29	26	20	23	1.99
35971--36076	21	5.3	20	73	20	87	31	21	22	24	1.98
35880--36055	91	1.9	91	98	0	343	30	23	21	24	1.99
36018--36072	17	2.9	18	79	12	58	29	23	21	25	1.99
35859--36132	108	2.5	110	86	8	373	31	22	21	24	1.99
36098--36161	33	1.9	33	100	0	128	37	14	23	25	1.92
36146--36332	21	8.6	22	71	25	98	30	21	22	25	1.99
36058--36293	124	1.8	127	91	7	388	32	19	22	25	1.97
36174--36229	29	1.9	29	96	0	103	28	25	23	23	1.99
36213--36296	41	2.0	41	100	0	168	34	19	22	23	1.96
36244--36373	62	2.1	62	87	8	185	26	20	24	28	1.99
36238--36373	21	6.6	20	72	16	82	26	21	24	27	1.99
36495--36527	5	6.6	5	92	0	57	24	54	21	0	1.45
37228--37341	21	5.5	20	82	10	97	22	21	25	29	1.99
42485--42545	21	3.2	21	61	29	55	32	4	19	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42477--42585	35	3.0	36	90	5	166	31	5	18	44	1.72
43788--43819	15	2.1	15	94	0	55	53	15	25	6	1.65
47107--47167	21	3.2	21	70	29	73	29	4	21	44	1.73
47099--47207	35	3.0	36	90	5	175	28	5	20	45	1.73
64085--64123	2	19.5	2	100	0	78	48	0	0	51	1.00
65901--65957	25	2.3	25	90	0	87	63	12	1	22	1.38
71110--71152	15	2.9	14	83	16	52	46	9	16	27	1.77
71902--72032	29	4.8	28	72	14	105	47	13	3	35	1.61
71950--72005	26	2.0	28	83	16	73	41	10	3	44	1.56
71979--72025	23	2.0	24	91	4	78	55	10	4	29	1.53
71892--72054	79	2.0	81	82	8	197	44	14	4	36	1.65
72001--72085	29	3.0	29	72	5	75	44	18	4	31	1.71
72094--72134	18	2.3	18	91	0	64	19	21	41	17	1.90

Tables:   1

The End!