Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004428.1 Hibiscus syriacus cultivar Beakdansim tig00009709_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92720

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3954--4046
45
2.1
45
81
4
107
53
12
4
29
1.58
5571--5620
24
2.1
24
84
0
64
16
12
40
32
1.84
10207--10276
33
2.1
33
89
0
104
35
21
17
25
1.95
21712--21752
21
2.0
21
85
0
55
39
19
9
31
1.84
21928--21957
14
2.1
14
93
0
51
56
3
6
33
1.42
22266--22337
20
3.5
20
76
12
67
27
23
18
30
1.97
22302--22446
54
2.7
54
85
3
184
28
22
19
29
1.98
22411--22466
20
2.7
21
83
8
62
28
19
17
33
1.95
30574--30609
2
18.0
2
100
0
72
50
0
0
50
1.00
32686--32739
24
2.2
24
100
0
108
7
29
25
37
1.83
32686--32749
24
2.7
24
90
4
76
10
29
23
35
1.89
35997--36040
21
2.1
21
83
8
54
31
11
18
38
1.86
36110--36200
18
4.5
19
69
25
71
57
0
3
39
1.15
36110--36211
18
5.4
18
69
23
68
58
0
2
38
1.13
36156--36234
24
3.2
24
73
8
63
60
2
1
35
1.18
41229--41263
18
1.9
18
88
0
52
28
17
0
54
1.43
42566--42655
45
2.0
45
86
0
126
34
24
20
21
1.96
43330--43384
28
2.0
28
96
0
101
47
1
45
5
1.36
46578--46612
18
1.9
18
88
0
52
28
17
0
54
1.43
47915--48004
45
2.0
45
84
0
117
34
23
21
21
1.97
48680--48734
28
2.0
28
96
0
101
47
1
45
5
1.36
55936--55976
17
2.3
18
80
16
50
4
34
0
60
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63542--63600
29
2.2
26
76
21
68
25
11
8
54
1.65
63698--63760
23
3.0
20
71
15
63
26
4
15
52
1.63
64914--64983
35
2.0
36
91
2
115
40
10
15
34
1.81
65886--65919
16
2.1
17
94
5
61
41
5
17
35
1.74
68573--68607
18
1.9
18
88
0
52
31
22
11
34
1.90
71918--71961
2
22.0
2
100
0
88
50
0
0
50
1.00
78582--78611
2
15.0
2
100
0
60
50
0
0
50
1.00
81744--82017
149
1.9
142
88
5
413
44
16
12
26
1.83
82041--82318
99
2.8
96
84
4
322
42
20
15
21
1.88
86288--86318
16
2.0
16
93
6
55
25
19
6
48
1.72

Tables:   1

The End!