genome.fa.s4429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004429.1 Hibiscus syriacus cultivar Beakdansim tig00009710_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132253

Tables:   1   2   

This is table  1  of  2  ( 127 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086--1143	20	3.0	20	87	2	73	43	22	18	15	1.88
1664--1717	20	2.7	20	94	0	90	27	18	22	31	1.97
5413--5767	20	17.5	20	76	5	210	38	23	18	19	1.93
5432--5767	41	8.3	41	82	7	341	38	23	17	19	1.93
6429--6462	12	2.8	12	90	0	50	55	29	0	14	1.40
6587--6640	24	2.2	24	93	0	90	20	18	20	40	1.91
9111--9388	33	8.2	33	86	5	367	44	19	23	13	1.85
9159--9186	14	2.0	14	100	0	56	42	21	21	14	1.88
9144--9377	19	13.5	19	69	22	131	44	18	22	13	1.85
9236--9356	14	7.6	14	67	24	62	45	18	23	12	1.83
9525--9561	14	2.6	14	91	0	65	45	21	0	32	1.52
9528--9704	83	2.1	84	96	2	331	42	18	2	36	1.65
10993--11115	42	2.9	41	80	7	113	22	17	36	23	1.94
11550--11606	14	3.7	14	77	20	60	45	21	22	10	1.82
11532--11625	33	2.8	33	91	0	152	45	23	21	9	1.81
11508--11593	19	4.7	19	73	16	83	47	18	20	12	1.81
11627--11778	19	8.1	19	73	13	95	14	17	21	46	1.84
11640--11738	52	1.9	52	89	0	153	12	20	21	46	1.82
11692--11778	40	2.2	40	81	6	97	14	18	20	45	1.84
11887--12080	94	2.1	92	92	1	316	47	17	13	21	1.82
14110--14226	20	5.7	20	74	12	103	20	17	26	35	1.94
14112--14225	42	2.7	42	83	4	133	20	16	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14212--14261	20	2.5	20	83	6	66	12	18	26	44	1.84
14742--14857	29	4.0	29	93	0	196	16	39	28	15	1.89
14866--14984	10	11.3	10	74	22	102	22	48	17	10	1.78
14876--14980	23	4.8	22	86	10	146	22	47	18	11	1.80
14862--15004	43	2.9	53	77	20	198	23	48	16	11	1.78
15641--15684	21	2.1	21	91	0	70	29	0	15	54	1.42
18760--19688	11	77.5	11	68	23	165	41	2	9	46	1.48
18824--19711	14	64.3	14	69	21	300	41	2	9	47	1.48
18913--18977	19	3.7	19	72	19	68	40	3	10	46	1.54
18921--19025	25	3.9	25	72	18	84	40	3	10	45	1.57
19139--19203	19	3.7	19	74	19	77	41	1	10	46	1.48
18779--19688	226	4.0	225	81	10	956	41	2	9	46	1.48
19262--19466	26	8.2	26	82	11	196	43	1	10	44	1.49
19259--19528	52	5.4	49	76	12	216	42	1	9	45	1.47
18844--19186	46	7.5	46	67	22	159	40	2	9	48	1.48
19406--19534	49	2.6	47	76	11	89	41	0	8	49	1.39
19675--19730	20	3.0	20	80	12	66	46	3	7	42	1.48
21793--21823	15	2.1	14	94	5	53	54	6	0	38	1.26
21798--21844	16	3.0	16	84	9	53	59	10	0	29	1.31
21885--21966	34	2.5	34	84	9	100	48	12	0	39	1.41
22003--22103	45	2.1	49	85	12	140	49	10	0	39	1.38
22201--22239	16	2.3	18	86	8	55	56	5	0	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22550--22641	29	3.2	29	93	0	148	23	30	31	14	1.94
23210--23236	2	13.5	2	100	0	54	51	0	0	48	1.00
23401--23500	24	4.2	24	74	5	94	47	17	14	22	1.82
23394--23502	48	2.3	48	77	0	119	48	16	13	21	1.80
24630--24665	18	2.0	18	88	0	54	30	16	0	52	1.44
25958--25996	7	5.3	7	88	11	60	25	25	33	15	1.95
25948--25996	15	3.1	15	91	5	71	24	24	34	16	1.95
25986--26061	13	5.5	13	79	14	80	14	22	44	18	1.86
25938--26012	8	9.5	8	79	19	70	22	24	36	17	1.95
25980--26035	18	2.9	18	89	7	76	14	23	44	17	1.85
25986--26047	31	2.0	31	93	0	106	12	22	45	19	1.84
28016--28050	2	17.5	2	100	0	70	51	0	0	48	1.00
28216--28315	24	4.2	24	74	5	94	47	17	14	22	1.82
28209--28317	48	2.3	48	77	0	119	48	16	13	21	1.80
29445--29480	18	2.0	18	88	0	54	30	16	0	52	1.44
30773--30811	7	5.3	7	88	11	60	25	25	33	15	1.95
30763--30811	15	3.1	15	91	5	71	24	24	34	16	1.95
30801--30876	13	5.5	13	79	14	80	14	22	44	18	1.86
30753--30827	8	9.5	8	79	19	70	22	24	36	17	1.95
30795--30850	18	2.9	18	89	7	76	14	23	44	17	1.85
30801--30862	31	2.0	31	93	0	106	12	22	45	19	1.84
32833--32865	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33031--33130	24	4.2	24	74	5	94	47	17	14	22	1.82
33024--33132	48	2.3	48	77	0	119	48	16	13	21	1.80
34254--34289	18	2.0	18	88	0	54	30	16	0	52	1.44
35581--35619	7	5.3	7	88	11	60	25	25	33	15	1.95
35571--35619	15	3.1	15	91	5	71	24	24	34	16	1.95
35609--35684	13	5.5	13	79	14	80	14	22	44	18	1.86
35561--35635	8	9.5	8	79	19	70	22	24	36	17	1.95
35603--35658	18	2.9	18	89	7	76	14	23	44	17	1.85
35609--35670	31	2.0	31	93	0	106	12	22	45	19	1.84
37644--37674	2	15.5	2	100	0	62	51	0	0	48	1.00
37839--37938	24	4.2	24	74	5	94	47	17	14	22	1.82
37832--37940	48	2.3	48	77	0	119	48	16	13	21	1.80
39065--39099	18	2.0	18	88	5	54	31	17	0	51	1.45
40393--40431	7	5.3	7	88	11	60	25	25	33	15	1.95
40383--40431	15	3.1	15	91	5	71	24	24	34	16	1.95
40421--40496	13	5.5	13	79	14	80	14	22	44	18	1.86
40373--40447	8	9.5	8	79	19	70	22	24	36	17	1.95
40415--40470	18	2.9	18	89	7	76	14	23	44	17	1.85
40421--40482	31	2.0	31	93	0	106	12	22	45	19	1.84
41270--41345	32	2.4	32	100	0	152	9	36	27	26	1.87
41430--41489	29	2.1	29	96	0	111	18	28	28	25	1.98
42870--42932	29	2.2	28	78	15	67	52	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49988--50035	18	2.7	18	83	0	60	25	27	14	33	1.94
55142--55174	16	2.1	16	94	0	57	27	27	12	33	1.92
57042--57093	20	2.5	20	90	9	79	26	5	19	48	1.71
57182--57439	38	6.8	40	71	17	119	31	3	15	48	1.64
57230--57299	29	2.4	29	92	2	113	32	4	14	48	1.63
57293--57422	4	32.8	4	79	7	104	29	3	19	47	1.67
57097--57422	115	2.8	114	77	13	312	31	4	16	46	1.68
57378--57439	19	3.3	19	75	8	72	33	4	12	48	1.63
59730--59766	18	2.1	18	89	0	56	2	24	29	43	1.68
64073--64118	19	2.4	19	100	0	92	28	26	21	23	1.99
67898--67949	26	2.0	26	100	0	104	42	15	15	26	1.87
69915--69990	32	2.4	31	89	6	116	23	19	23	32	1.97
69917--70056	32	4.5	31	78	5	113	23	18	22	35	1.96
71153--71692	288	1.9	286	87	1	785	32	15	5	46	1.69
73481--73570	46	2.0	46	93	0	153	30	20	28	21	1.98
75169--75219	25	2.0	25	100	0	102	41	23	15	19	1.90
83899--84001	36	2.9	36	88	1	145	39	23	16	20	1.92
87398--87430	15	2.2	15	89	10	50	36	0	3	60	1.12
89256--89351	48	2.0	49	95	2	176	37	17	10	34	1.84
92490--92539	23	2.2	23	92	0	82	36	2	14	48	1.55
92497--92543	23	2.0	23	100	0	94	36	4	17	42	1.68
95012--95053	19	2.2	19	95	0	75	40	16	2	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96426--96479	19	2.8	19	88	2	72	29	27	31	11	1.91
96687--96802	27	4.3	27	87	0	160	28	9	25	36	1.87
97142--97183	21	2.0	21	100	0	84	33	14	14	38	1.86
113248--113305	26	2.2	26	100	0	116	31	13	0	55	1.39
115668--115725	26	2.3	25	88	5	82	70	0	24	5	1.07
116152--116201	21	2.4	21	90	6	75	40	30	8	22	1.82
116805--116889	30	2.7	32	80	5	84	22	20	9	48	1.78
117206--117248	21	2.0	21	86	9	59	62	2	0	34	1.08
120515--120542	6	4.7	6	100	0	56	35	28	0	35	1.58
122309--122359	14	3.7	14	73	2	50	31	29	17	21	1.96

Tables:   1   2