genome.fa.s443.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000443.1 Hibiscus syriacus cultivar Beakdansim tig00000809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50064

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7427--7461	2	17.5	2	100	0	70	0	51	0	48	1.00
16204--16258	21	2.6	22	88	5	71	34	36	10	18	1.86
26712--26829	59	2.0	59	100	0	236	30	13	27	28	1.94
32623--32664	18	2.3	18	91	0	75	26	19	26	28	1.98
35126--35165	21	1.9	21	94	0	71	52	0	7	40	1.30
36861--36937	20	3.8	20	70	17	61	29	27	15	27	1.96
36921--37036	20	5.8	20	75	4	81	30	24	10	35	1.89
36941--37072	40	3.4	39	82	2	149	32	23	9	34	1.86
36940--37072	20	6.8	20	68	19	82	32	23	9	35	1.86
37206--37244	16	2.5	15	84	8	51	28	5	0	66	1.12
37262--37286	7	3.6	7	100	0	50	44	28	0	28	1.55
37847--37880	12	2.8	12	90	0	50	55	29	0	14	1.40
38007--38052	24	1.9	24	90	0	74	23	19	21	34	1.96
38006--38059	24	2.2	24	83	0	72	22	16	20	40	1.91
40636--40693	20	2.9	20	89	0	80	17	13	22	46	1.83
42158--42247	42	2.1	42	87	0	126	22	17	36	23	1.95
42175--42273	21	4.8	20	76	10	92	25	19	34	21	1.96
42175--42273	42	2.4	42	85	0	126	25	19	34	21	1.96
42552--42593	21	2.0	21	86	9	59	33	26	16	23	1.96
42679--42725	21	2.2	21	92	0	76	34	31	14	19	1.92
42626--42725	42	2.4	41	73	8	103	31	35	14	20	1.92
43455--43498	20	2.2	20	91	0	70	15	22	22	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43523--43562	20	2.0	20	90	0	62	27	17	17	37	1.92
45033--45130	21	4.7	22	79	11	116	24	17	35	22	1.95
45033--45130	41	2.4	42	91	1	153	24	17	35	22	1.95
45037--45130	42	2.3	41	90	1	143	25	14	37	22	1.93
45531--45571	21	2.0	21	90	0	64	34	36	14	14	1.87
47077--47136	20	3.0	20	85	0	84	18	11	16	53	1.72
47650--47697	20	2.5	19	90	10	71	20	12	22	43	1.86
47688--47740	20	2.6	21	84	3	72	26	15	20	37	1.92

Tables:   1

The End!