Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004430.1 Hibiscus syriacus cultivar Beakdansim tig00009711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132728
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Found at i:4113 original size:20 final size:19
Alignment explanation
Indices: 4082--4119 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
4072 TACTTTTCTG
4082 GAAATTATGTTAGAATGTT
1 GAAATTATGTTAGAATGTT
4101 GAAATTGATGTTAGAATGT
1 GAAATT-ATGTTAGAATGT
4120 GAGATAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (19 bp):
GAAATTATGTTAGAATGTT
Found at i:6673 original size:22 final size:21
Alignment explanation
Indices: 6649--6688 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
6639 GAGAAATTGT
6649 TTTTAAAATAT-AAAAATGATA
1 TTTTAAAAT-TGAAAAATGATA
6670 TTTTAAAATTGAAAAATGA
1 TTTTAAAATTGAAAAATGA
6689 AAACAATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
TTTTAAAATTGAAAAATGATA
Found at i:10506 original size:21 final size:19
Alignment explanation
Indices: 10480--10554 Score: 78
Period size: 19 Copynumber: 3.6 Consensus size: 19
10470 TGTGCATAGA
*
10480 GTATCGATACCCCTAAGACTG
1 GTATCGATACCCCT-TGA-TG
10501 GTATCGATACCCCCTTTGAATAG
1 GTATCGATA-CCCC-TTG-AT-G
10524 GTATCGATACCCCTTGATG
1 GTATCGATACCCCTTGATG
*
10543 GTATTGATACCC
1 GTATCGATACCC
10555 TCCACGGGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
19 12 0.25
20 2 0.04
21 12 0.25
22 10 0.21
23 12 0.25
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (19 bp):
GTATCGATACCCCTTGATG
Found at i:10530 original size:23 final size:23
Alignment explanation
Indices: 10475--10536 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
10465 ATTTTTGTGC
10475 ATAGAGTATCGATA-CCCCTAAGA
1 ATAG-GTATCGATACCCCCTAAGA
* **
10498 CT-GGTATCGATACCCCCTTTGA
1 ATAGGTATCGATACCCCCTAAGA
10520 ATAGGTATCGATACCCC
1 ATAGGTATCGATACCCC
10537 TTGATGGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 9 0.27
22 9 0.27
23 15 0.45
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (23 bp):
ATAGGTATCGATACCCCCTAAGA
Found at i:11252 original size:6 final size:6
Alignment explanation
Indices: 11241--11270 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
11231 CCATCCAATA
11241 AATCCT AATCCT AATCCT AATCCT AATCCT
1 AATCCT AATCCT AATCCT AATCCT AATCCT
11271 GATATGATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (6 bp):
AATCCT
Found at i:15093 original size:29 final size:30
Alignment explanation
Indices: 15023--15082 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
15013 CAATTTAAGG
15023 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAAT-GTTTTTGGACTTGAATTGAATTTA
15054 CAAAATGTTTTTGGACTT-AATTGAATTTA
1 CAAAATGTTTTTGGACTTGAATTGAATTTA
15083 TTCAAAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 12 0.41
31 6 0.21
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (30 bp):
CAAAATGTTTTTGGACTTGAATTGAATTTA
Found at i:15190 original size:13 final size:13
Alignment explanation
Indices: 15172--15196 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15162 AGTTCATCTA
15172 TGCATCCCTGCAG
1 TGCATCCCTGCAG
15185 TGCATCCCTGCA
1 TGCATCCCTGCA
15197 CCTGCACTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.20, T:0.24
Consensus pattern (13 bp):
TGCATCCCTGCAG
Found at i:15218 original size:22 final size:23
Alignment explanation
Indices: 15183--15239 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 23
15173 GCATCCCTGC
*
15183 AGTGCATCCCTGCACC-TGCACT
1 AGTGCATCCATGCACCATGCACT
*
15205 AGTGCATCGATGCACCATG--C-
1 AGTGCATCCATGCACCATGCACT
15225 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
15240 TCAAACACCG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 14 0.45
21 1 0.03
22 14 0.45
23 2 0.06
ACGTcount: A:0.23, C:0.35, G:0.21, T:0.21
Consensus pattern (23 bp):
AGTGCATCCATGCACCATGCACT
Found at i:15336 original size:21 final size:21
Alignment explanation
Indices: 15260--15336 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
15250 AATGCAATTA
**
15260 GTGCATCGATGCATC-ATTCT
1 GTGCATCGATGCATCAAGGCT
*
15280 GTGCATCGATGCATTAAGGCT
1 GTGCATCGATGCATCAAGGCT
15301 GTGCATCGATGCATCAAGGCT
1 GTGCATCGATGCATCAAGGCT
15322 GTGCATCGATGCATC
1 GTGCATCGATGCATC
15337 CTGTTGTGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
20 14 0.27
21 38 0.73
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (21 bp):
GTGCATCGATGCATCAAGGCT
Found at i:15748 original size:34 final size:32
Alignment explanation
Indices: 15710--15779 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 32
15700 ATTTTTAAAG
* *
15710 GGGAAAGGTTCTAGATTATCCCGTATAAAAGCTA
1 GGGAAAGGTTCTAGATTAGCCCGGA-AAAA-CTA
* *
15744 GGGAAATGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGATTAGCCCGGAAAAACTA
15776 GGGA
1 GGGA
15780 GTTGTAAGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 7 0.22
33 4 0.12
34 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.24
Consensus pattern (32 bp):
GGGAAAGGTTCTAGATTAGCCCGGAAAAACTA
Found at i:16447 original size:19 final size:19
Alignment explanation
Indices: 16423--16477 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
16413 TATGCATTGG
* *
16423 GCTATGGATTTGAAAATAA
1 GCTATGAATCTGAAAATAA
*
16442 GCTATGAATCTGAAAGTAA
1 GCTATGAATCTGAAAATAA
* * *
16461 GTTCTGAATCAGAAAAT
1 GCTATGAATCTGAAAAT
16478 GAATTATGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (19 bp):
GCTATGAATCTGAAAATAA
Found at i:17584 original size:42 final size:40
Alignment explanation
Indices: 17527--17615 Score: 108
Period size: 42 Copynumber: 2.2 Consensus size: 40
17517 GGTTTTTAAG
* * *
17527 AAACACCACTAAAGTACTAGTTTGTCA-CGGCGTTTGTGAAA
1 AAACGCCACTAAAGTACAAG-TTGT-AGCGGCGTTCGTGAAA
*
17568 TAAACGCCACTAAAGTACAAGTTGTAGCGGCGTTCGTGGAA
1 -AAACGCCACTAAAGTACAAGTTGTAGCGGCGTTCGTGAAA
17609 AAACGCC
1 AAACGCC
17616 GTTAATGTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 8 0.19
41 16 0.38
42 18 0.43
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (40 bp):
AAACGCCACTAAAGTACAAGTTGTAGCGGCGTTCGTGAAA
Found at i:19307 original size:18 final size:19
Alignment explanation
Indices: 19286--19329 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
19276 TAAATTTAAT
*
19286 TAAATAAA-TTAAAATTTA
1 TAAATAAACTTAAAATATA
*
19304 TAAAAAAACTTTAAAATATA
1 TAAATAAAC-TTAAAATATA
19324 TAAATA
1 TAAATA
19330 TTGAAGATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 7 0.33
20 14 0.67
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
TAAATAAACTTAAAATATA
Found at i:25716 original size:20 final size:20
Alignment explanation
Indices: 25691--25781 Score: 72
Period size: 20 Copynumber: 5.0 Consensus size: 20
25681 TAAATTAAAT
*
25691 ATTAGATAGGATCAGTTTTA
1 ATTAGATAGAATCAGTTTTA
*
25711 ATTAGATAGAATCAGTTTTT
1 ATTAGATAGAATCAGTTTTA
* *
25731 ATT--CT---ATTAG--TT-
1 ATTAGATAGAATCAGTTTTA
* *
25743 ATTAGATAGGATCATTTTTA
1 ATTAGATAGAATCAGTTTTA
25763 ATTAGATAGAATCAGTTTT
1 ATTAGATAGAATCAGTTTT
25782 TTATTCTATT
Statistics
Matches: 54, Mismatches: 9, Indels: 16
0.68 0.11 0.20
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 1 0.02
15 4 0.07
17 3 0.06
18 1 0.02
19 2 0.04
20 38 0.70
ACGTcount: A:0.34, C:0.05, G:0.15, T:0.45
Consensus pattern (20 bp):
ATTAGATAGAATCAGTTTTA
Found at i:25806 original size:53 final size:52
Alignment explanation
Indices: 25690--25839 Score: 266
Period size: 53 Copynumber: 2.9 Consensus size: 52
25680 CTAAATTAAA
*
25690 TATTAGATAGGATCAGTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
25742 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTTATTCTATTAGT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAG-TTTTTATTCTATTAGT
*
25795 TATTAGATAGGATCATTTTTAATTAGATAGAATTA-TTTTTATTCT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATTCT
25840 GTTGCTAATT
Statistics
Matches: 95, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
51 10 0.11
52 35 0.37
53 50 0.53
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (52 bp):
TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
Found at i:25821 original size:20 final size:20
Alignment explanation
Indices: 25796--25835 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
25786 TCTATTAGTT
*
25796 ATTAGATAGGATCATTTTTA
1 ATTAGATAGAATCATTTTTA
*
25816 ATTAGATAGAATTATTTTTA
1 ATTAGATAGAATCATTTTTA
25836 TTCTGTTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (20 bp):
ATTAGATAGAATCATTTTTA
Found at i:31543 original size:20 final size:20
Alignment explanation
Indices: 31520--31558 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
31510 TAAATTAAAT
*
31520 ATTAAATAGGATCAGTTTTA
1 ATTAAATAGAATCAGTTTTA
*
31540 ATTAGATAGAATCAGTTTT
1 ATTAAATAGAATCAGTTTT
31559 TATTCTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.41
Consensus pattern (20 bp):
ATTAAATAGAATCAGTTTTA
Found at i:31597 original size:20 final size:21
Alignment explanation
Indices: 31572--31611 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
31562 TCTATTAGTT
*
31572 ATTAGATAGGATCA-TTTTTA
1 ATTAGATAGAATCAGTTTTTA
31592 ATTAGATAGAATCAGTTTTT
1 ATTAGATAGAATCAGTTTTT
31612 TATTCTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (21 bp):
ATTAGATAGAATCAGTTTTTA
Found at i:31638 original size:53 final size:52
Alignment explanation
Indices: 31519--31668 Score: 257
Period size: 53 Copynumber: 2.9 Consensus size: 52
31509 CTAAATTAAA
* *
31519 TATTAAATAGGATCAGTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
31571 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTTATTCTATTAGT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAG-TTTTTATTCTATTAGT
*
31624 TATTAGATATGATCATTTTTAATTAGATAGAATCA-TTTTTATTCT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATTCT
31669 GTTGCTAATT
Statistics
Matches: 94, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
51 10 0.11
52 34 0.36
53 50 0.53
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49
Consensus pattern (52 bp):
TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTATTCTATTAGT
Found at i:31650 original size:20 final size:20
Alignment explanation
Indices: 31625--31664 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
31615 TCTATTAGTT
31625 ATTAGATATG-ATCATTTTTA
1 ATTAGATA-GAATCATTTTTA
31645 ATTAGATAGAATCATTTTTA
1 ATTAGATAGAATCATTTTTA
31665 TTCTGTTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (20 bp):
ATTAGATAGAATCATTTTTA
Found at i:32083 original size:14 final size:15
Alignment explanation
Indices: 32048--32091 Score: 72
Period size: 14 Copynumber: 2.9 Consensus size: 15
32038 AATCAATTAT
32048 TGTAGAAAACAGACTG
1 TGTAGAAAACAGAC-G
32064 TGTAGAAAACAGAC-
1 TGTAGAAAACAGACG
32078 TGTAGAAAACAGAC
1 TGTAGAAAACAGAC
32092 AAGTCTGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 14 0.50
16 14 0.50
ACGTcount: A:0.48, C:0.14, G:0.23, T:0.16
Consensus pattern (15 bp):
TGTAGAAAACAGACG
Found at i:34389 original size:51 final size:51
Alignment explanation
Indices: 34313--34413 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
34303 TAAGGAAAGG
*
34313 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGTTGAAATTCCTTGTAACTA
1 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTGAAATTCCTTGTAACTA
*
34364 ATAGGTTGTAAAGAAATATCGGTTTGAACAGGCTGAAATTCCTTGTAACT
1 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTGAAATTCCTTGTAACT
34414 CTCCCCCTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.32
Consensus pattern (51 bp):
ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTGAAATTCCTTGTAACTA
Found at i:36212 original size:14 final size:15
Alignment explanation
Indices: 36177--36220 Score: 72
Period size: 14 Copynumber: 2.9 Consensus size: 15
36167 CCTAATACCA
36177 TGTAGAAAACAGACTG
1 TGTAGAAAACAGAC-G
36193 TGTAGAAAACAGAC-
1 TGTAGAAAACAGACG
36207 TGTAGAAAACAGAC
1 TGTAGAAAACAGAC
36221 AAGTCTGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 14 0.50
16 14 0.50
ACGTcount: A:0.48, C:0.14, G:0.23, T:0.16
Consensus pattern (15 bp):
TGTAGAAAACAGACG
Found at i:48664 original size:15 final size:15
Alignment explanation
Indices: 48644--48674 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
48634 AGTGTGTTTC
48644 GGGTCCATTAATGAT
1 GGGTCCATTAATGAT
48659 GGGTCCATTAATGAT
1 GGGTCCATTAATGAT
48674 G
1 G
48675 CGATTGCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (15 bp):
GGGTCCATTAATGAT
Found at i:52551 original size:24 final size:24
Alignment explanation
Indices: 52524--52598 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
52514 GTTCGTGAAC
*
52524 GTTCGGTTATGTTCATTCGGTTAT
1 GTTCGCTTATGTTCATTCGGTTAT
* *
52548 GTTCGTTTATGTTCGTTCGGTTAT
1 GTTCGCTTATGTTCATTCGGTTAT
**
52572 GTTCGCTTATGTTCATTCATTTAT
1 GTTCGCTTATGTTCATTCGGTTAT
52596 GTT
1 GTT
52599 TAACCCAATC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.12, C:0.13, G:0.21, T:0.53
Consensus pattern (24 bp):
GTTCGCTTATGTTCATTCGGTTAT
Found at i:52576 original size:14 final size:14
Alignment explanation
Indices: 52523--52576 Score: 71
Period size: 14 Copynumber: 4.1 Consensus size: 14
52513 CGTTCGTGAA
52523 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
*
52537 CATTCGGTTATGTT
1 CGTTCGGTTATGTT
52551 CG-T---TTATGTT
1 CGTTCGGTTATGTT
52561 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
52575 CG
1 CG
52577 CTTATGTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
10 9 0.26
11 1 0.03
13 1 0.03
14 23 0.68
ACGTcount: A:0.09, C:0.15, G:0.26, T:0.50
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:53700 original size:16 final size:16
Alignment explanation
Indices: 53679--53728 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
53669 CTAACGTTTA
53679 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
53695 TGTTCGTTTTATGTTCG
1 TGTTCG-TTTATGTTCG
*
53712 TGTTCGTTTATATTCG
1 TGTTCGTTTATGTTCG
53728 T
1 T
53729 TTATTTATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 16 0.50
17 16 0.50
ACGTcount: A:0.08, C:0.12, G:0.22, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:53707 original size:17 final size:17
Alignment explanation
Indices: 53679--53720 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
53669 CTAACGTTTA
53679 TGTTCG-TTTATGTTCG
1 TGTTCGTTTTATGTTCG
53695 TGTTCGTTTTATGTTCG
1 TGTTCGTTTTATGTTCG
53712 TGTTCGTTT
1 TGTTCGTTT
53721 ATATTCGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.05, C:0.12, G:0.24, T:0.60
Consensus pattern (17 bp):
TGTTCGTTTTATGTTCG
Found at i:53819 original size:16 final size:16
Alignment explanation
Indices: 53798--53828 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
53788 AAAAAAAATT
*
53798 TGTTCGTTTATGTTCA
1 TGTTCGTATATGTTCA
53814 TGTTCGTATATGTTC
1 TGTTCGTATATGTTC
53829 GTTTATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.13, G:0.19, T:0.55
Consensus pattern (16 bp):
TGTTCGTATATGTTCA
Found at i:60158 original size:14 final size:13
Alignment explanation
Indices: 60141--60175 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
60131 TATTTTTTGA
60141 TTTATTATAATTAT
1 TTTATTAT-ATTAT
60155 TTTATTATATTAT
1 TTTATTATATTAT
60168 TATTATTA
1 T-TTATTA
60176 ATAAATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTATTATATTAT
Found at i:61787 original size:165 final size:166
Alignment explanation
Indices: 61595--61937 Score: 580
Period size: 166 Copynumber: 2.1 Consensus size: 166
61585 ATAATAAAAA
* *
61595 ATATTTATTTTTTATTCAAATCCTATTTATAAATTTAACCTTATACAAATTACTTTTAAATTATT
1 ATATCTATTTTTTATTCAAAACCTATTTATAAATTTAACCTTATACAAATTACTTTTAAATTATT
* * * *
61660 TTAATATTT-TTTTTCAATATTAAGAAAGGGCATTCTTAAAGCAATTGGATGTCCATTTTCTGAT
66 TTAATATTTGTTTTTCAATATTAAGAAAGGGCAGTCTTAAAGCAACTGAATATCCATTTTCTGAT
61724 ATTTTTAAATAAATAAATATCTTACTTTTATAAATT
131 ATTTTTAAATAAATAAATATCTTACTTTTATAAATT
* * *
61760 ATATCTATTTTTTATTCAAAACCTATTTATAAATTTAATCTTATATACATTACTTTTAAATTATT
1 ATATCTATTTTTTATTCAAAACCTATTTATAAATTTAACCTTATACAAATTACTTTTAAATTATT
* *
61825 TTAATATTTGTTTTTCAATATTAAGAAATGGCAGTCTTAAAGCAACTGAATATCCATTTTTTGAT
66 TTAATATTTGTTTTTCAATATTAAGAAAGGGCAGTCTTAAAGCAACTGAATATCCATTTTCTGAT
61890 ATTTTTAAATAAATAAATATCTTACTTTTATAAATT
131 ATTTTTAAATAAATAAATATCTTACTTTTATAAATT
61926 ATATCTATTTTT
1 ATATCTATTTTT
61938 AATTATTTTT
Statistics
Matches: 166, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
165 69 0.42
166 97 0.58
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.49
Consensus pattern (166 bp):
ATATCTATTTTTTATTCAAAACCTATTTATAAATTTAACCTTATACAAATTACTTTTAAATTATT
TTAATATTTGTTTTTCAATATTAAGAAAGGGCAGTCTTAAAGCAACTGAATATCCATTTTCTGAT
ATTTTTAAATAAATAAATATCTTACTTTTATAAATT
Found at i:62611 original size:26 final size:25
Alignment explanation
Indices: 62559--62613 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
62549 TAATTCTTTC
*
62559 TTTTCAAAATTTTATATACTTATTA
1 TTTTCAAAATTTTATATACTTAATA
*
62584 TTTTCATAATATTTATATA-TATAATA
1 TTTTCAAAAT-TTTATATACT-TAATA
62610 TTTT
1 TTTT
62614 TATTATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTTCAAAATTTTATATACTTAATA
Found at i:64689 original size:18 final size:18
Alignment explanation
Indices: 64668--64706 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
64658 GCATTTGATA
*
64668 CTCTGGAAGAGGTTGTTC
1 CTCTGGAAGAGCTTGTTC
* *
64686 CTCTGGAGGTGCTTGTTC
1 CTCTGGAAGAGCTTGTTC
64704 CTC
1 CTC
64707 GTGCTGCTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.10, C:0.23, G:0.31, T:0.36
Consensus pattern (18 bp):
CTCTGGAAGAGCTTGTTC
Found at i:66384 original size:22 final size:23
Alignment explanation
Indices: 66291--66398 Score: 182
Period size: 23 Copynumber: 4.7 Consensus size: 23
66281 ATTCCCCTAC
66291 AGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCGGTTCCCCTTCAA
66314 AGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCGGTTCCCCTTCAA
*
66337 AGGGGGAATCGATTCCCCTTCAA
1 AGGGGGAATCGGTTCCCCTTCAA
66360 AGGGGGAATCGGTTCCCCTTC-A
1 AGGGGGAATCGGTTCCCCTTCAA
* *
66382 AGGGGGTATCGATTCCC
1 AGGGGGAATCGGTTCCC
66399 TATGCACTAA
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
22 16 0.20
23 65 0.80
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (23 bp):
AGGGGGAATCGGTTCCCCTTCAA
Found at i:74276 original size:3 final size:3
Alignment explanation
Indices: 74256--74316 Score: 99
Period size: 3 Copynumber: 21.0 Consensus size: 3
74246 ATTTTTTGAT
*
74256 TTA TTA TAA TTA TT- TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
74302 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
74317 GTTAATAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 4 0.07
3 50 0.93
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:75763 original size:20 final size:20
Alignment explanation
Indices: 75740--75791 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
75730 AACGCGATCC
75740 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
75760 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
75780 CCAAAATCGCAA
1 CCAGAATCGCAA
75792 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:75808 original size:21 final size:20
Alignment explanation
Indices: 75781--75879 Score: 63
Period size: 21 Copynumber: 4.8 Consensus size: 20
75771 AATCAGTTTC
75781 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * *
75802 GAAAATCGCGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
75823 CAAATTCGCATTGCGATTTTT
1 CAAAATCGCAACGCGA-TTTT
* * *
75844 CATAATCGCAACGCGAATAT
1 CAAAATCGCAACGCGATTTT
*
75864 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
75880 ACACATAAAT
Statistics
Matches: 57, Mismatches: 19, Indels: 5
0.70 0.23 0.06
Matches are distributed among these distances:
20 16 0.28
21 40 0.70
22 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.23
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:75872 original size:20 final size:20
Alignment explanation
Indices: 75847--76040 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
75837 GATTTTTCAT
* *
75847 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
75867 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
75887 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
75907 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
75927 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
75947 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
75967 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
75987 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
76008 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
76028 AATCGCAACGCGA
1 AATCGCAACGCGA
76041 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:75892 original size:40 final size:39
Alignment explanation
Indices: 75847--76040 Score: 199
Period size: 40 Copynumber: 4.8 Consensus size: 39
75837 GATTTTTCAT
* ** *
75847 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAAC-CATA
* * *
75887 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCATA
** * * *
75927 AATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCATA
* ** *
75967 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAA-CCAT-A
76008 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
76041 TATTTAAAGC
Statistics
Matches: 128, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.73
41 33 0.26
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (39 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACCATA
Found at i:75930 original size:60 final size:60
Alignment explanation
Indices: 75847--76039 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
75837 GATTTTTCAT
* ** * *
75847 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
75907 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
75967 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
76028 AATCGCAACGCG
1 AATCGCAACGCG
76040 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:76460 original size:33 final size:33
Alignment explanation
Indices: 76421--76491 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
76411 TTCACTTAGA
*
76421 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
76454 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
76487 TTTCA
1 TTTCA
76492 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:76631 original size:14 final size:14
Alignment explanation
Indices: 76612--76666 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
76602 AGAATGACTG
76612 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
76626 TCGCAACGCGAAATGAAAA
1 TCGCAA--CG--A-GAGAA
76645 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
76659 TCGCAACG
1 TCGCAACG
76667 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.42, C:0.24, G:0.25, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:76649 original size:33 final size:33
Alignment explanation
Indices: 76612--76682 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
76602 AGAATGACTG
**
76612 TCGCAACGAGAGAATCGCAACGCGAAATGAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
76645 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
76678 TCGCA
1 TCGCA
76683 TTGCGATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:76700 original size:19 final size:19
Alignment explanation
Indices: 76678--76775 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
76668 GAAACCAAAA
*
76678 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
76697 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
76711 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
76730 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
76744 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
76763 TCGCGTTGCGATT
1 TCGCGTTGCGATT
76776 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:76719 original size:14 final size:14
Alignment explanation
Indices: 76700--76789 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
76690 TTTCATTTCG
76700 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
76714 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
76733 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
76747 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
76764 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
76780 CGTTGCGATT
1 CGTTGCGATT
76790 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:76725 original size:33 final size:33
Alignment explanation
Indices: 76683--76797 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
76673 CAAAATCGCA
76683 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
76716 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
76749 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
76782 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
76798 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:78781 original size:93 final size:93
Alignment explanation
Indices: 78493--78963 Score: 903
Period size: 93 Copynumber: 5.1 Consensus size: 93
78483 TAGATTGCTT
*
78493 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
78558 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
78586 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATA-TCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
78649 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
78677 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
78742 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
78770 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
78834 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
78862 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
78927 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
78955 AGTAAATTT
1 AGTAAATTT
78964 ATCCATTCAA
Statistics
Matches: 372, Mismatches: 3, Indels: 6
0.98 0.01 0.02
Matches are distributed among these distances:
91 71 0.19
92 130 0.35
93 171 0.46
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:78802 original size:184 final size:185
Alignment explanation
Indices: 78493--78963 Score: 917
Period size: 185 Copynumber: 2.6 Consensus size: 185
78483 TAGATTGCTT
*
78493 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
78558 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
78623 GTATA-TCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTATATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAA
78677 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
78742 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
*
78807 GTGTATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTATATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAA
78862 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
78927 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
78964 ATCCATTCAA
Statistics
Matches: 284, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
184 133 0.47
185 151 0.53
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (185 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTATATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:79032 original size:20 final size:20
Alignment explanation
Indices: 79007--79072 Score: 91
Period size: 19 Copynumber: 3.4 Consensus size: 20
78997 TAGTTTACTT
* *
79007 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAACTCAAAA
79027 TCGCAACGCGAAAC-CAAAA
1 TCGCAACGCGAAACTCAAAA
*
79046 TCGCAACGCGAAA-TGAAAA
1 TCGCAACGCGAAACTCAAAA
79065 TCGCAACG
1 TCGCAACG
79073 ACAGAATCGC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
19 29 0.69
20 13 0.31
ACGTcount: A:0.45, C:0.27, G:0.17, T:0.11
Consensus pattern (20 bp):
TCGCAACGCGAAACTCAAAA
Found at i:79082 original size:14 final size:13
Alignment explanation
Indices: 79062--79100 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 13
79052 CGCGAAATGA
79062 AAATCGCAACGAC
1 AAATCGCAACGAC
79075 AGAATCGCAACGAC
1 A-AATCGCAACGAC
79089 AAGATCGCAACG
1 AA-ATCGCAACG
79101 CGAAACCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 2 0.08
14 22 0.92
ACGTcount: A:0.44, C:0.28, G:0.21, T:0.08
Consensus pattern (13 bp):
AAATCGCAACGAC
Found at i:79134 original size:19 final size:19
Alignment explanation
Indices: 79112--79246 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
79102 GAAACCAAAA
*
79112 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
79131 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
79147 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
79164 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
79180 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
79197 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
79216 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
79236 TCGTGTTGCGA
1 TCGCGTTGCGA
79247 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:79153 original size:14 final size:14
Alignment explanation
Indices: 79134--79190 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
79124 TTTCATTTCG
79134 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
79148 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
79165 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
79181 CGTTGCGATT
1 CGTTGCGATT
79191 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:79159 original size:33 final size:33
Alignment explanation
Indices: 79117--79209 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
79107 CAAAATCGCA
*
79117 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
79150 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
79183 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
79210 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:81165 original size:14 final size:14
Alignment explanation
Indices: 81146--81181 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
81136 ATTGTTTAAT
81146 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
81160 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
81174 TGATTTGT
1 TGATTTGT
81182 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:81304 original size:19 final size:19
Alignment explanation
Indices: 81288--81389 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
81278 AAAAATGACT
81288 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
81307 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
81326 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
81340 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
81359 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
81379 ATCGCAATGCG
1 ATCGCAATGCG
81390 TTTATAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 40 0.53
20 19 0.25
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:81442 original size:19 final size:19
Alignment explanation
Indices: 81418--81690 Score: 345
Period size: 19 Copynumber: 15.4 Consensus size: 19
81408 GATTATCTCG
81418 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
81437 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
81456 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
81470 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
81489 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
81508 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
81527 TTGCGA-TTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
81545 TTGCGATTTTAATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
81564 TTGCGA--TTC-TGTCG--
1 TTGCGATTTTCATTTCGCA
81578 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
81597 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
81616 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
81630 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
81650 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
81664 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
81683 TTGCGATT
1 TTGCGATT
81691 GTATTTTCCG
Statistics
Matches: 224, Mismatches: 8, Indels: 44
0.81 0.03 0.16
Matches are distributed among these distances:
14 29 0.13
16 24 0.11
17 20 0.09
18 21 0.09
19 118 0.53
20 12 0.05
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:81458 original size:52 final size:52
Alignment explanation
Indices: 81396--81662 Score: 428
Period size: 52 Copynumber: 5.0 Consensus size: 52
81386 TGCGTTTATA
*
81396 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
*
81448 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
* *
81500 ATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTTCATTTCGCATTGCGATTTTA
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCATTGCGATTTTC
*
81556 ATTTCGCATTGCGATTCTGTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
81608 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
81661 AT
1 AT
81663 GTTGGGATTT
Statistics
Matches: 202, Mismatches: 6, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
51 6 0.03
52 122 0.60
53 21 0.10
54 6 0.03
55 5 0.02
56 36 0.18
57 6 0.03
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.46
Consensus pattern (52 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
Found at i:81553 original size:108 final size:102
Alignment explanation
Indices: 81418--81657 Score: 167
Period size: 108 Copynumber: 2.3 Consensus size: 102
81408 GATTATCTCG
81418 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TTTCG-TTGCGATTTT
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--TTGCGATTTCATTTCGATTGCGATTTT
*
81480 CATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCA
61 CATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCA
* *
81527 TTGCGA-TTTCATTTCGCATTGCGATTTTAATTTCGCATTGCGA-TTC-TGTCG-TTGCGATTTT
1 TTGCGATTTTCATTTCGCATTGCGA--TT-CTTTCG--TTGCGATTTCATTTCGATTGCGATTTT
* * * * *
81588 CATTTCGCATTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG
61 CATTTCGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCA
81630 TTGCGATTTTCATTTCCGCATTGCGATT
1 TTGCGATTTTCATTT-CGCATTGCGATT
81658 TTCATGTTGG
Statistics
Matches: 118, Mismatches: 7, Indels: 18
0.83 0.05 0.13
Matches are distributed among these distances:
101 7 0.06
102 4 0.03
103 13 0.11
104 9 0.08
105 10 0.08
106 2 0.02
108 67 0.57
109 6 0.05
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.47
Consensus pattern (102 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTCATTTCGATTGCGATTTTCATTT
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
Found at i:81653 original size:34 final size:33
Alignment explanation
Indices: 81396--81690 Score: 155
Period size: 33 Copynumber: 8.5 Consensus size: 33
81386 TGCGTTTATA
*
81396 ATTTCGCATTGCGATTATC-TCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCAT-GTTGCGATTTTC
*
81429 ATTTCGCATTGCGATTTTCAT-TT-CGCATTGCGATTC
1 ATTTCGCATTGCGATTCTCATGTTGCG-ATT----TTC
*
81465 -TTTCG--TTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCA--T-G--TTGCGATTTTC
*
81500 ATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTTC
1 ATTTCGCATTGCGATTCTCA--T-G--TTGCGATTTTC
* * *
81537 ATTTCGCATTGCGATTTTAAT-TT-CGCA-TTGC
1 ATTTCGCATTGCGATTCTCATGTTGCG-ATTTTC
* *
81568 GA-TTCTGTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 -ATTTC-G-CATTGCGATTCTCA--T-G--TTGCGATTTTC
81608 ATTTCGCATTGCGATTCTC-TCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCAT-GTTGCGATTTTC
* *
81641 ATTTCCGCATTGCGATTTTCATGTTGGGATTTTC
1 ATTT-CGCATTGCGATTCTCATGTTGCGATTTTC
*
81675 ATTTCGCGTTGCGATT
1 ATTTCGCATTGCGATT
81691 GTATTTTCCG
Statistics
Matches: 220, Mismatches: 11, Indels: 62
0.75 0.04 0.21
Matches are distributed among these distances:
30 2 0.01
31 11 0.05
32 7 0.03
33 68 0.31
34 30 0.14
35 15 0.07
36 8 0.04
37 23 0.10
38 36 0.16
39 10 0.05
40 10 0.05
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (33 bp):
ATTTCGCATTGCGATTCTCATGTTGCGATTTTC
Found at i:84201 original size:24 final size:24
Alignment explanation
Indices: 84167--84213 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
84157 CTGAAACATC
84167 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
84191 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
84214 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:84923 original size:20 final size:20
Alignment explanation
Indices: 84895--85263 Score: 451
Period size: 20 Copynumber: 18.4 Consensus size: 20
84885 AAATTTAAGT
* * * *
84895 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
84915 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
84935 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
84955 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
84975 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
84995 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
85015 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
85035 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
85055 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
85075 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
85095 GTTGC-AGTTTACGGATACGC
1 GTTGCGA-TTTACGGATACGC
85115 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
85135 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
85155 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
85175 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
85195 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
85215 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
85235 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
85255 GTTGCGATT
1 GTTGCGATT
85264 ATGGAAAATC
Statistics
Matches: 309, Mismatches: 30, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
19 6 0.02
20 297 0.96
21 6 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:85790 original size:21 final size:22
Alignment explanation
Indices: 85740--85792 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
85730 CATTTTCTGG
**
85740 TATTTTTAAATAAATAAATATC
1 TATTTTTTTATAAATAAATATC
**
85762 T-TACTTTTATAAAT-AATATC
1 TATTTTTTTATAAATAAATATC
85782 TATTTTTTTAT
1 TATTTTTTTAT
85793 TCAAATCCTA
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
20 7 0.29
21 16 0.67
22 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTTTTTTATAAATAAATATC
Found at i:85794 original size:167 final size:167
Alignment explanation
Indices: 85603--85955 Score: 607
Period size: 167 Copynumber: 2.1 Consensus size: 167
85593 AACATATATA
* * *
85603 ATAAAAAATATTTATTTTTTTATTCAAATCCTATTTATAAATTTAATCTTATATAAATTACTTTT
1 ATAAATAATATATATTTTTTTATTCAAATCCTATTTATAAATTTAATCTTATATAAATTAATTTT
* *
85668 AAATTATTTTAATATTTATTTTTCAATATTAAGAAAGGGAAGTCTTAAAGCAACTGGATGTTCAT
66 AAATTATTTTAATATTTATTTTTCAATATTAAGAAAGAGAAGTCTTAAAGCAACTGGATGTCCAT
*
85733 TTTCTGGTATTTTTAAATAAATAAATATCTTACTTTT
131 TTTCTGATATTTTTAAATAAATAAATATCTTACTTTT
*
85770 ATAAATAATATCTATTTTTTTATTCAAATCCTATTTATAAATTTAATCTTATATAAATTAATTTT
1 ATAAATAATATATATTTTTTTATTCAAATCCTATTTATAAATTTAATCTTATATAAATTAATTTT
*
85835 AAATTATTTTAATATTTATTTTTCAATATTAAGAAAGAGCAGTCTTAAAGCAACTGGATGTCCAT
66 AAATTATTTTAATATTTATTTTTCAATATTAAGAAAGAGAAGTCTTAAAGCAACTGGATGTCCAT
* *
85900 TTTTTGATATTTTTAAATAAATAAATATTTTACTTTT
131 TTTCTGATATTTTTAAATAAATAAATATCTTACTTTT
*
85937 ATAAATTATATATATTTTT
1 ATAAATAATATATATTTTT
85956 AATTATTTTT
Statistics
Matches: 175, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
167 175 1.00
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.49
Consensus pattern (167 bp):
ATAAATAATATATATTTTTTTATTCAAATCCTATTTATAAATTTAATCTTATATAAATTAATTTT
AAATTATTTTAATATTTATTTTTCAATATTAAGAAAGAGAAGTCTTAAAGCAACTGGATGTCCAT
TTTCTGATATTTTTAAATAAATAAATATCTTACTTTT
Found at i:85960 original size:131 final size:128
Alignment explanation
Indices: 85849--86084 Score: 294
Period size: 131 Copynumber: 1.8 Consensus size: 128
85839 TATTTTAATA
* * * * *
85849 TTTATTTTTCAATATT-AAGAAAGAGCAGTCTTAAAGCAACTGGATGTCCATTTTTTGATATTTT
1 TTTATTTTTCAATATTAAAAAAAAAGCAGTCTTAAAGCAACTAGAAG-CCATTTTTTGATATTTC
* * * *
85913 TAAATAAATAAATATTTTACTTTTATAAATTATATATATTTTTAATTATTTTTAGATAAATGTTT
65 TAAATAAATAAATATTTTACATATATAAATTA-ATA-ATTTTTAATTAATTTTAAATAAATGTTT
85978 T
128 T
* ** * *
85979 TTTATTTTTTAATATTAAAAAAAAAAGTTGTCTTAAAGCACCTAGAAGCCCTTTTTTGATATTTC
1 TTTATTTTTCAATATT-AAAAAAAAAGCAGTCTTAAAGCAACTAGAAGCCATTTTTTGATATTTC
*
86044 TAAATAAATAAATATTTTAGATATATAAATTAATAATTTTT
65 TAAATAAATAAATATTTTACATATATAAATTAATAATTTTT
86085 CTTAAAATTA
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
129 6 0.07
130 18 0.20
131 44 0.48
132 23 0.25
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.47
Consensus pattern (128 bp):
TTTATTTTTCAATATTAAAAAAAAAGCAGTCTTAAAGCAACTAGAAGCCATTTTTTGATATTTCT
AAATAAATAAATATTTTACATATATAAATTAATAATTTTTAATTAATTTTAAATAAATGTTTT
Found at i:86964 original size:14 final size:15
Alignment explanation
Indices: 86947--86976 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
86937 TTTATCTTAA
86947 TAATTTTTTA-TTAT
1 TAATTTTTTAGTTAT
86961 TAATTTTTTAGTTAT
1 TAATTTTTTAGTTAT
86976 T
1 T
86977 TTTTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (15 bp):
TAATTTTTTAGTTAT
Found at i:88622 original size:5 final size:5
Alignment explanation
Indices: 88601--88674 Score: 61
Period size: 5 Copynumber: 15.4 Consensus size: 5
88591 CATGGACATA
*
88601 AATAA AA-AA TAA-AA AATGA AAT-A AATAA AAT-A AAT-A AATAA AATAA
1 AATAA AATAA -AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
*
88647 AATAA AATAA TAAT-A TATAA TAATAA AA
1 AATAA AATAA -AATAA AATAA -AATAA AA
88675 ACTATATAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
4 18 0.31
5 34 0.58
6 7 0.12
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:88626 original size:9 final size:8
Alignment explanation
Indices: 88598--88673 Score: 61
Period size: 9 Copynumber: 9.1 Consensus size: 8
88588 GGACATGGAC
88598 ATAAATAA
1 ATAAATAA
88606 A-AAATAA
1 ATAAATAA
88613 A-AAATGAA
1 ATAAAT-AA
88621 ATAAATAAA
1 ATAAAT-AA
88630 ATAAATAA
1 ATAAATAA
88638 ATAAAATAAA
1 AT-AAAT-AA
88648 ATAAA-ATA
1 ATAAATA-A
88656 ATAATATATA
1 ATAA-ATA-A
88666 AT-AATAA
1 ATAAATAA
88673 A
1 A
88674 AACTATATAA
Statistics
Matches: 60, Mismatches: 1, Indels: 15
0.79 0.01 0.20
Matches are distributed among these distances:
7 14 0.23
8 16 0.27
9 21 0.35
10 9 0.15
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (8 bp):
ATAAATAA
Found at i:88644 original size:18 final size:18
Alignment explanation
Indices: 88598--88673 Score: 70
Period size: 18 Copynumber: 4.3 Consensus size: 18
88588 GGACATGGAC
*
88598 ATAAATAAAA-AATAAAAA
1 ATAAATAAAATAA-AATAA
88616 ATGAAAT-AAATAAAATAA
1 AT-AAATAAAATAAAATAA
88634 ATAAATAAAATAAAATAA
1 ATAAATAAAATAAAATAA
* *
88652 A-ATAATAATATATAAT-A
1 ATA-AATAAAATAAAATAA
88669 ATAAA
1 ATAAA
88674 AACTATATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
17 9 0.18
18 35 0.70
19 6 0.12
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (18 bp):
ATAAATAAAATAAAATAA
Found at i:88668 original size:13 final size:12
Alignment explanation
Indices: 88598--88673 Score: 72
Period size: 13 Copynumber: 6.4 Consensus size: 12
88588 GGACATGGAC
88598 ATAAATAAAA-A
1 ATAAATAAAATA
88609 AT-AA-AAAATGAA
1 ATAAATAAAAT--A
88621 ATAAATAAAATAA
1 ATAAATAAAAT-A
88634 ATAAATAAAAT-
1 ATAAATAAAATA
88645 A-AAATAAAATA
1 ATAAATAAAATA
*
88656 ATAATATATAATA
1 ATAA-ATAAAATA
88669 ATAAA
1 ATAAA
88674 AACTATATAA
Statistics
Matches: 56, Mismatches: 1, Indels: 15
0.78 0.01 0.21
Matches are distributed among these distances:
9 4 0.07
10 11 0.20
11 4 0.07
12 6 0.11
13 26 0.46
14 5 0.09
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (12 bp):
ATAAATAAAATA
Found at i:88682 original size:17 final size:16
Alignment explanation
Indices: 88648--88685 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
88638 ATAAAATAAA
*
88648 ATAA-AATAATAATAT
1 ATAATAATAAAAATAT
88663 ATAATAATAAAAACTAT
1 ATAATAATAAAAA-TAT
88680 ATAATA
1 ATAATA
88686 TTACGTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 7 0.35
17 9 0.45
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATAATAAAAATAT
Found at i:88769 original size:72 final size:70
Alignment explanation
Indices: 88692--89020 Score: 367
Period size: 72 Copynumber: 4.6 Consensus size: 70
88682 AATATTACGT
*
88692 GTTTTCAAAATTTATTTTTAAAATATATATTATATGTTTTCAAACCCTTTTTTAAAAAACCATAT
1 GTTTTCAAAA-TTATTTTAAAAATATATATTATATGTTTTCAAACCCTTTTTT-AAAAACCATAT
88757 ATTATAC
64 ATTATAC
* * ** *
88764 GTTTTCAAAATCATTTTAAAAAAATATATTATATATGTTTTCAAACCCTTTTTTTTAAATCATAT
1 GTTTTCAAAATTATTTTAAAAATATATA-T-TATATGTTTTCAAACCCTTTTTTAAAAACCATAT
88829 ATTATAC
64 ATTATAC
* * *
88836 GTTTTCAAAATCATTTTAAAAAAATATATTATATATGTTTTCAAACCCTTTATTTTTAAAAACTA
1 GTTTTCAAAATTATTTTAAAAATATATA-T-TATATGTTTTCAAACCC--T-TTTTTAAAAACCA
88901 TATATTATAC
61 TATATTATAC
* * * * *
88911 GTTTTCAAAACTATTTTAAAAAATTATATATTACAT-TTTTCAAAACC-ATTTTAAAAA-TATAT
1 GTTTTCAAAATTATTTT-AAAAA-TATATATTATATGTTTTCAAACCCTTTTTTAAAAACCATAT
88973 ATTATAC
64 ATTATAC
* * *
88980 ATTTTTAAAATTATTTTTAAAAGTTATATATTATATGTTTT
1 GTTTTCAAAATTA-TTTTAAAA-ATATATATTATATGTTTT
89021 TTAAAAATAA
Statistics
Matches: 226, Mismatches: 21, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
69 37 0.16
70 17 0.08
71 15 0.07
72 74 0.33
73 23 0.10
74 11 0.05
75 38 0.17
76 6 0.03
77 5 0.02
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.47
Consensus pattern (70 bp):
GTTTTCAAAATTATTTTAAAAATATATATTATATGTTTTCAAACCCTTTTTTAAAAACCATATAT
TATAC
Found at i:89021 original size:36 final size:36
Alignment explanation
Indices: 88691--89088 Score: 285
Period size: 36 Copynumber: 10.9 Consensus size: 36
88681 TAATATTACG
88691 TGTTTTCAAAATTTATTTTT-AAAA-TATATATTATA
1 TGTTTTCAAAA-TTATTTTTAAAAATTATATATTATA
* * **
88726 TGTTTTCAAACCCTT-TTTTAAAAAACCATATATTATA
1 TGTTTTCAAA--ATTATTTTTAAAAATTATATATTATA
* * * *
88763 CGTTTTCAAAATCATTTTAAAAAAATATAT-TATATA
1 TGTTTTCAAAATTATTTTTAAAAATTATATAT-TATA
* * *
88799 TGTTTTCAAACCCTT-TTTTT-TAAATCATATATTATA
1 TGTTTTCAAA--ATTATTTTTAAAAATTATATATTATA
* * * *
88835 CGTTTTCAAAATCATTTTAAAAAAATATAT-TATATA
1 TGTTTTCAAAATTATTTTTAAAAATTATATAT-TATA
* *
88871 TGTTTTCAAACCCTTTATTTTTAAAAACTATATATTATA
1 TGTTTTCAAA---ATTATTTTTAAAAATTATATATTATA
* * * *
88910 CGTTTTCAAAACTATTTTAAAAAATTATATATTACA
1 TGTTTTCAAAATTATTTTTAAAAATTATATATTATA
**
88946 T-TTTTCAAAACCA-TTTTAAAAA-TATATATTATA
1 TGTTTTCAAAATTATTTTTAAAAATTATATATTATA
** * *
88979 CATTTTTAAAATTATTTTTAAAAGTTATATATTATA
1 TGTTTTCAAAATTATTTTTAAAAATTATATATTATA
* *
89015 TGTTTTTTAAAAATAAATTTTTAAAAATTATATATTATA
1 TG--TTTTCAAAAT-TATTTTTAAAAATTATATATTATA
* * * *
89054 TATTTTTAAAAACTATATTTAAAATTATTATATAT
1 T-GTTTTCAAAATTATTTTTAAAA--ATTATATAT
89089 ACTATATTAT
Statistics
Matches: 287, Mismatches: 51, Indels: 46
0.75 0.13 0.12
Matches are distributed among these distances:
33 10 0.03
34 18 0.06
35 40 0.14
36 105 0.37
37 33 0.11
38 19 0.07
39 61 0.21
40 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (36 bp):
TGTTTTCAAAATTATTTTTAAAAATTATATATTATA
Found at i:91319 original size:23 final size:24
Alignment explanation
Indices: 91282--91329 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
91272 TGATTTATTT
*
91282 ATACTATTTTAAGAATAA-AAAAA
1 ATACTAATTTAAGAATAAGAAAAA
*
91305 ATACTAATTTCAGAATAAGAAAAA
1 ATACTAATTTAAGAATAAGAAAAA
91329 A
1 A
91330 AAAGACTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (24 bp):
ATACTAATTTAAGAATAAGAAAAA
Found at i:91550 original size:26 final size:28
Alignment explanation
Indices: 91507--91565 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 28
91497 GTTTCGATTA
*
91507 AAATTTAATTGATATTT-AATTTAA-AT
1 AAATTTAATTGATATTTAAAGTTAACAT
*
91533 AAATTTAATTTA-AGTTTAAAGTTAACAT
1 AAATTTAATTGATA-TTTAAAGTTAACAT
91561 AAATT
1 AAATT
91566 CTTAATAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 1 0.04
26 14 0.50
27 6 0.21
28 7 0.25
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (28 bp):
AAATTTAATTGATATTTAAAGTTAACAT
Found at i:92239 original size:2 final size:2
Alignment explanation
Indices: 92232--92265 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
92222 ATAGTTTTCC
92232 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92266 AAGTAGCCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97800 original size:46 final size:46
Alignment explanation
Indices: 97747--97838 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 46
97737 AATACAAAAA
97747 CATACTTACA-CCGATGTAAGTATATATTAATTGCTAAGATATTGAG
1 CATACTTACATCCG-TGTAAGTATATATTAATTGCTAAGATATTGAG
* ** * * *
97793 CATACTTATATTTGTGTAAGTATGTGTTAATTTCTAAGATATTGAG
1 CATACTTACATCCGTGTAAGTATATATTAATTGCTAAGATATTGAG
97839 AGATGTACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 38 0.97
47 1 0.03
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (46 bp):
CATACTTACATCCGTGTAAGTATATATTAATTGCTAAGATATTGAG
Found at i:97873 original size:53 final size:53
Alignment explanation
Indices: 97793--97983 Score: 231
Period size: 53 Copynumber: 3.6 Consensus size: 53
97783 AGATATTGAG
*
97793 CATACTTATATTTGTGTAAGTATGTGTTAATTTCTAAGATATTGAGAGATGTA
1 CATACTTATATTAGTGTAAGTATGTGTTAATTTCTAAGATATTGAGAGATGTA
* * *
97846 CATACTTATATTGGTGTAAGTTTGTGTTAATTTCTAATG-TATTGAGAGATCTA
1 CATACTTATATTAGTGTAAGTATGTGTTAATTTCTAA-GATATTGAGAGATGTA
* * * * * **
97899 TATACTTACATCAATATAAGCGTGTGTTAATTTCTAAGATATTGAGAGATGTA
1 CATACTTATATTAGTGTAAGTATGTGTTAATTTCTAAGATATTGAGAGATGTA
* ** *
97952 TATACTTATACCAGTGTAAGAATGTGTTAATT
1 CATACTTATATTAGTGTAAGTATGTGTTAATT
97984 GCTACATTTT
Statistics
Matches: 118, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
52 1 0.01
53 116 0.98
54 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (53 bp):
CATACTTATATTAGTGTAAGTATGTGTTAATTTCTAAGATATTGAGAGATGTA
Found at i:104277 original size:2 final size:2
Alignment explanation
Indices: 104270--104307 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
104260 TTTAAAAATA
104270 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104308 TATGTATCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105546 original size:110 final size:108
Alignment explanation
Indices: 105360--105598 Score: 322
Period size: 110 Copynumber: 2.2 Consensus size: 108
105350 ATCCTCTGTC
* * *
105360 GTGAAGTTGAAATTGGCTCTG--GAACTGGGAAATTGTTTGTTGACAGCCAGTTGCCCCTTCACT
1 GTGAAGTTGAAATTGGCTCTGAAGAACTGGAAAATTGTTTGTTGACAACCAGTCGCCCCTTCACT
* *
105423 GTGAAGTTGAGCTTGTGTTGTCTCAAGTTCAATATCCTTCGCT
66 ATGAAGTTGAGCTTGTGTTGTCTCAAGTTCAATATCCCTCGCT
* *
105466 GTGAAGTTGAAATTGACTCTGAATGAAACT-GAAAAGTTGTTTGTTGACAATCAGTCGCCCCTTC
1 GTGAAGTTGAAATTGGCTCTGAA-G-AACTGGAAAA-TTGTTTGTTGACAACCAGTCGCCCCTTC
** * **
105530 GTTATGAATTTGAGCTTGTGTTGTCTTGAGTTCAATATCCCTCGCT
63 ACTATGAAGTTGAGCTTGTGTTGTCTCAAGTTCAATATCCCTCGCT
105576 GTGAAGTTGAAATTGGCTCTGAA
1 GTGAAGTTGAAATTGGCTCTGAA
105599 ATTGGGAAGC
Statistics
Matches: 115, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
106 20 0.17
109 5 0.04
110 90 0.78
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (108 bp):
GTGAAGTTGAAATTGGCTCTGAAGAACTGGAAAATTGTTTGTTGACAACCAGTCGCCCCTTCACT
ATGAAGTTGAGCTTGTGTTGTCTCAAGTTCAATATCCCTCGCT
Found at i:106390 original size:36 final size:36
Alignment explanation
Indices: 106342--106633 Score: 177
Period size: 36 Copynumber: 8.4 Consensus size: 36
106332 GAAGATTTTG
*
106342 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* * **
106378 TGTTTTAGGAGAAA-----T--A-A-ATTCAAAGATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAA-AT-T
* * *
106407 TGTTTCAAGGGAAACTGTCTCAAGAGAAACGAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
*
106443 TGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* * * * *
106480 AGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* * * **
106516 TGTTTCAA-ATAAAACATAT-TC---A-A-A-TATTTT
1 TGTTTCAAGA-GAAAC-TGTCTCAAGAGAGACAAAATT
* *
106546 GTGTTTTAAGGGAAACTGTCTCAAGAGAGACAAAATT
1 -TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
106583 TGTTTCAAGGGAAACTGTCTCAAGAGAGACGAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
106619 TATTTTCAAGGGAAA
1 T-GTTTCAAGAGAAA
106634 TGTTTGCAAT
Statistics
Matches: 193, Mismatches: 39, Indels: 47
0.69 0.14 0.17
Matches are distributed among these distances:
27 5 0.03
28 2 0.01
29 13 0.07
30 5 0.03
31 15 0.08
32 1 0.01
34 2 0.01
35 2 0.01
36 94 0.49
37 50 0.26
38 4 0.02
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:106407 original size:67 final size:67
Alignment explanation
Indices: 106260--106589 Score: 235
Period size: 67 Copynumber: 4.8 Consensus size: 67
106250 GGAAACAATC
* * * * * *
106260 TCAAAGATATCTGTTGTTTCATGAAAAACGGTCTCAAGGGAAACAAAATTTTGTTTTAAGG-GAA
1 TCAAAGAT-TTTG-TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTG-TTTCAGGAGAA
106324 ATAAAT
62 ATAAAT
** *
106330 TTGAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAGGAGAAATAA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAGGAGAAATAA
106395 AT
66 AT
* * * * *
106397 TCAAAGA-TTT-TGTTTCAAGGGAAACTGTCTCAAGAGAAACGAAATTTGTTTCAAGAGAAACT-
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAGGAGAAA-TA
*
106459 -GT
65 AAT
* * * * * *
106461 CTCAAGAGAGATAAAACTT-AGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTCA-A
1 -TC-A-A-AGAT----TTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAGG
*
106524 ATAAA-ACATAT
58 AGAAATA-A-AT
* * * *
106535 TCAAATATTTTGTGTTTTAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCA
106590 AGGGAAACTG
Statistics
Matches: 208, Mismatches: 36, Indels: 35
0.75 0.13 0.13
Matches are distributed among these distances:
64 1 0.00
65 46 0.22
66 13 0.06
67 55 0.26
68 33 0.16
69 3 0.01
70 9 0.04
71 1 0.00
72 5 0.02
73 41 0.20
74 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (67 bp):
TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAGGAGAAATAA
AT
Found at i:106443 original size:65 final size:67
Alignment explanation
Indices: 106260--106456 Score: 229
Period size: 65 Copynumber: 2.9 Consensus size: 67
106250 GGAAACAATC
* * * *
106260 TCAAAGATATCTGTTGTTTCATGAAAAACGGTCTCAAGGGAAACAAAATTTTGTTTTAAGG-GAA
1 TCAAAGAT-TTTG-TGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAA-TTTGTTTT-AGGAGAA
106324 ATAAAT
62 ATAAAT
** *
106330 TTGAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAGGAGAAATAA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAGGAGAAATAA
106395 AT
66 AT
* * * * *
106397 TCAAAGA-TTT-TGTTTCAAGGGAAACTGTCTCAAGAGAAACGAAATTTGTTTCAAGAGAAA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAGGAGAAA
106457 CTGTCTCAAG
Statistics
Matches: 111, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
65 44 0.40
66 6 0.05
67 22 0.20
68 30 0.27
69 3 0.03
70 6 0.05
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (67 bp):
TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAGGAGAAATAA
AT
Found at i:106516 original size:138 final size:140
Alignment explanation
Indices: 106351--106611 Score: 395
Period size: 140 Copynumber: 1.9 Consensus size: 140
106341 GTGTTTCAAG
* *
106351 AGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAGGAGAAATA-A-ATTCAAAGA-TTT-TGTTT
1 AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCA-AAGAAA-ACATATTCAAAGATTTTGTGTTT
*
106412 CAAGGGAAACTGTCTCAAGAGAAACGAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAA
64 CAAGGGAAACTGTCTCAAGAGAAACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAA
106477 CTTAGTTCCAAA
129 CTTAGTTCCAAA
* * * *
106489 AGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAAATAAAACATATTCAAATATTTTGTGTTTTA
1 AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAAGAAAACATATTCAAAGATTTTGTGTTTCA
* *
106554 AGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGA
66 AGGGAAACTGTCTCAAGAGAAACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
106612 CGAAATTTAT
Statistics
Matches: 110, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
136 1 0.01
137 5 0.05
138 40 0.36
139 3 0.03
140 61 0.55
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (140 bp):
AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAAGAAAACATATTCAAAGATTTTGTGTTTCA
AGGGAAACTGTCTCAAGAGAAACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAACT
TAGTTCCAAA
Found at i:106617 original size:103 final size:103
Alignment explanation
Indices: 106443--106714 Score: 291
Period size: 103 Copynumber: 2.6 Consensus size: 103
106433 AAACGAAATT
* * * ** *
106443 TGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAGAGAG
* * *
106508 ACGAAATTT-GTTTCAAATAAAACATATT-CAAATATTTTG
66 ACGAAATTTAGTTTCAAAGAAAACAT-TTGC-AAT-GTTTA
* *
106547 TGTTTTAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGGGAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAGAGAG
* * * **
106611 ACGAAATTTATTTTCAAGGGAAATGTTTGCAATGTTTA
66 ACGAAATTTAGTTTCAAAGAAAACATTTGCAATGTTTA
* * * * *
106649 TGTTTCAAGAGAAACTGTCTCAATG-GAGGCAAAATTTTGTTTCAAGGGAAATTATCTCAAGCGA
1 TGTTTCAAGAGAAACTGTCTCAA-GAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAGAGA
106713 GA
65 GA
106715 TAAAATCTTC
Statistics
Matches: 142, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
102 32 0.23
103 68 0.48
104 42 0.30
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (103 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAGAGAG
ACGAAATTTAGTTTCAAAGAAAACATTTGCAATGTTTA
Found at i:106672 original size:29 final size:28
Alignment explanation
Indices: 106617--106673 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
106607 AGAGACGAAA
* *
106617 TTTATTTTCAAGGGAAATGTTTGCAATG
1 TTTATTTTCAAGAGAAATGTCTGCAATG
106645 TTTATGTTTCAAGAGAAACTGTCT-CAATG
1 TTTAT-TTTCAAGAGAAA-TGTCTGCAATG
106674 GAGGCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.20
29 16 0.64
30 4 0.16
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (28 bp):
TTTATTTTCAAGAGAAATGTCTGCAATG
Found at i:111397 original size:25 final size:24
Alignment explanation
Indices: 111340--111398 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
111330 CAAACGTGAG
*
111340 AATAATAAATAAAACAAGAAAAAAT
1 AATAAT-AACAAAACAAGAAAAAAT
* *
111365 AGAAAATAACAAAACACGTAAAAAAT
1 A-ATAATAACAAAACAAG-AAAAAAT
111391 AATAATAA
1 AATAATAA
111399 TAAATAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.15
Consensus pattern (24 bp):
AATAATAACAAAACAAGAAAAAAT
Found at i:111615 original size:47 final size:46
Alignment explanation
Indices: 111559--111658 Score: 114
Period size: 47 Copynumber: 2.2 Consensus size: 46
111549 AATACTAAGT
* *
111559 AAAACAAGTAAAAA-ATAA-AGATATACATGATATTAATGAAAAATAAA
1 AAAAAAAGTAAAAATATAATAGATATACAT-ATATAAAT-AAAAA-AAA
* * *
111606 AAAAAAAGTAAAAATATAATATATATATATATATAAATAAATAAAA
1 AAAAAAAGTAAAAATATAATAGATATACATATATAAATAAAAAAAA
111652 AAAAAAA
1 AAAAAAA
111659 TAGAATATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
46 10 0.22
47 17 0.37
48 11 0.24
49 8 0.17
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (46 bp):
AAAAAAAGTAAAAATATAATAGATATACATATATAAATAAAAAAAA
Found at i:111676 original size:18 final size:18
Alignment explanation
Indices: 111653--111719 Score: 80
Period size: 18 Copynumber: 3.6 Consensus size: 18
111643 TAAATAAAAA
*
111653 AAAAAATAGAATATTAAG
1 AAAAAATATAATATTAAG
* *
111671 AAAAAATATATATATAAAC
1 AAAAAATATA-ATATTAAG
111690 ATATAAAATATAATATTAAG
1 A-A-AAAATATAATATTAAG
111710 AAAAAATATA
1 AAAAAATATA
111720 TATACATAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
18 17 0.41
19 8 0.20
20 8 0.20
21 8 0.20
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.27
Consensus pattern (18 bp):
AAAAAATATAATATTAAG
Found at i:111676 original size:19 final size:18
Alignment explanation
Indices: 111640--111715 Score: 57
Period size: 19 Copynumber: 4.1 Consensus size: 18
111630 ATATATATAT
*
111640 AAATAAATA--AAAAAAA
1 AAATAAATATTAAGAAAA
111656 AAATAGAATATTAAGAAAA
1 AAATA-AATATTAAGAAAA
* * * *
111675 AATATATATATAAACATATA
1 AA-ATAAATATTAAGA-AAA
111695 AAATATAATATTAAGAAAA
1 AAATA-AATATTAAGAAAA
111714 AA
1 AA
111716 TATATATACA
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
16 5 0.11
17 4 0.09
19 22 0.49
20 14 0.31
ACGTcount: A:0.71, C:0.01, G:0.04, T:0.24
Consensus pattern (18 bp):
AAATAAATATTAAGAAAA
Found at i:111720 original size:20 final size:20
Alignment explanation
Indices: 111651--111721 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
111641 AATAAATAAA
* *
111651 AAAAAAAATAGAATATTAAG
1 AAAAAATATATAATATTAAG
* *
111671 AAAAAATATAT-ATATAAAC
1 AAAAAATATATAATATTAAG
*
111690 ATATAAA-ATATAATATTAAG
1 A-AAAAATATATAATATTAAG
111710 AAAAAATATATA
1 AAAAAATATATA
111722 TACATAGCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 15 0.38
20 25 0.62
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAAAATATATAATATTAAG
Found at i:111792 original size:19 final size:19
Alignment explanation
Indices: 111756--111807 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
111746 ATACATATAT
* *
111756 ATATATATAATGATATAAG
1 ATATATATAATAAAATAAG
*
111775 ATATATATAATAAAATAAT
1 ATATATATAATAAAATAAG
111794 ATA-ATATAAATAAA
1 ATATATAT-AATAAA
111808 TAAAAAAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 4 0.14
19 25 0.86
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
ATATATATAATAAAATAAG
Found at i:111809 original size:15 final size:15
Alignment explanation
Indices: 111768--111809 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
111758 ATATATAATG
*
111768 ATATAAGATATATATA
1 ATATAA-ATAAATATA
111784 ATA-AAAT-AATATA
1 ATATAAATAAATATA
111797 ATATAAATAAATA
1 ATATAAATAAATA
111810 AAAAAGAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 8 0.35
14 6 0.26
15 6 0.26
16 3 0.13
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (15 bp):
ATATAAATAAATATA
Found at i:111813 original size:24 final size:24
Alignment explanation
Indices: 111754--111812 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
111744 TAATACATAT
* * *
111754 ATATATATATAATGATATAAGATAT
1 ATATA-ATAAAATAATATAAGATAA
*
111779 ATATAATAAAATAATATAATATAA
1 ATATAATAAAATAATATAAGATAA
111803 ATA-AATAAAA
1 ATATAATAAAA
111813 AAGAGGAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 7 0.23
24 18 0.60
25 5 0.17
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (24 bp):
ATATAATAAAATAATATAAGATAA
Found at i:111853 original size:12 final size:12
Alignment explanation
Indices: 111779--111856 Score: 54
Period size: 12 Copynumber: 6.4 Consensus size: 12
111769 TATAAGATAT
111779 ATATAATAAAATA
1 ATATAATAAAA-A
*
111792 ATATAAT-ATAA
1 ATATAATAAAAA
111803 ATA-AATAAAAA
1 ATATAATAAAAA
* * *
111814 AGAGGAATATAGTAA
1 ATA-TAATA-A-AAA
111829 ATA-AATAAAAA
1 ATATAATAAAAA
*
111840 ATATAATTAAAA
1 ATATAATAAAAA
111852 ATATA
1 ATATA
111857 TATATAGGAG
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
10 3 0.06
11 14 0.27
12 15 0.29
13 15 0.29
14 1 0.02
15 4 0.08
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (12 bp):
ATATAATAAAAA
Found at i:113320 original size:3 final size:3
Alignment explanation
Indices: 113312--113353 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
113302 ATTCCATTGA
113312 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
113354 ACAATTTGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:119791 original size:3 final size:3
Alignment explanation
Indices: 119785--119834 Score: 68
Period size: 3 Copynumber: 16.7 Consensus size: 3
119775 TTTATTGGAA
119785 TAT TAT T-T ATAT TAT TAT TAT TAT TAT TA- TAT ATAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
119830 TAT TA
1 TAT TA
119835 AAAAAATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
2 3 0.07
3 36 0.84
4 4 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:119846 original size:21 final size:21
Alignment explanation
Indices: 119801--119846 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
119791 TTATATTATT
* * * *
119801 ATTATTATTATTATATATATT
1 ATTATTATTATTAAAAAAATA
119822 ATTATTATTATTAAAAAAATA
1 ATTATTATTATTAAAAAAATA
119843 ATTA
1 ATTA
119847 CAAGCCCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTATTATTATTAAAAAAATA
Found at i:121417 original size:20 final size:19
Alignment explanation
Indices: 121392--121431 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
121382 CTATTTTATA
121392 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
121412 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
121431 A
1 A
121432 TATCAGGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:123711 original size:14 final size:14
Alignment explanation
Indices: 123691--123726 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
123681 ATTTCAAATA
123691 ATTTACATTTACAT
1 ATTTACATTTACAT
* *
123705 TTTTACATTTGCAT
1 ATTTACATTTACAT
123719 ATTTACAT
1 ATTTACAT
123727 CTGGCATCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.14, G:0.03, T:0.53
Consensus pattern (14 bp):
ATTTACATTTACAT
Found at i:127049 original size:13 final size:13
Alignment explanation
Indices: 127031--127066 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
127021 AGAAGAAGGA
127031 AAAAAACAAAAAC
1 AAAAAACAAAAAC
127044 AAAAAAC-AAAAC
1 AAAAAACAAAAAC
*
127056 AAAAAAGAAAA
1 AAAAAACAAAA
127067 GGAAAAGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAAACAAAAAC
Found at i:127089 original size:17 final size:17
Alignment explanation
Indices: 127069--127103 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
127059 AAAGAAAAGG
127069 AAAAGGAAAAAAAGAAA
1 AAAAGGAAAAAAAGAAA
*
127086 AAAAGGAAAAAAGGAAA
1 AAAAGGAAAAAAAGAAA
127103 A
1 A
127104 TTGAATCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (17 bp):
AAAAGGAAAAAAAGAAA
Found at i:129531 original size:111 final size:111
Alignment explanation
Indices: 129332--129547 Score: 346
Period size: 111 Copynumber: 1.9 Consensus size: 111
129322 AAGTGCCACG
*
129332 TTCTCGTAGTAGAAATAAGAAGACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
1 TTCTCATAGTAGAAATAAGAAGACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
* * *
129397 GGTTTGGTATGAACCCTAAAACCAATCATT-GATTTGAAATGAATT
66 GGTTCGGTATGAACCCCAAAACCAATCATTGGAATTGAAATGAATT
*
129442 TTCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TTCTCATAGTAGAAATAAGAAGA-CCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
*
129507 TGGTTCGGTA-GAAACCCCAGAACCAATCATTGGAATTGAAA
65 TGGTTCGGTATG-AACCCCAAAACCAATCATTGGAATTGAAA
129548 GATGAACTGC
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
110 22 0.23
111 67 0.69
112 8 0.08
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (111 bp):
TTCTCATAGTAGAAATAAGAAGACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
GGTTCGGTATGAACCCCAAAACCAATCATTGGAATTGAAATGAATT
Found at i:132029 original size:20 final size:20
Alignment explanation
Indices: 132001--132039 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
131991 AAGATGATAG
*
132001 ATTCCCTTTTTAAAGATGAC
1 ATTCCCTTTTCAAAGATGAC
*
132021 ATTCTCTTTTCAAAGATGA
1 ATTCCCTTTTCAAAGATGA
132040 AAGCTTTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (20 bp):
ATTCCCTTTTCAAAGATGAC
Found at i:132676 original size:110 final size:110
Alignment explanation
Indices: 132434--132728 Score: 364
Period size: 111 Copynumber: 2.7 Consensus size: 110
132424 TTAGCAAGAT
* *
132434 TCAAATCCATCACTGATGGATCAGCTTTT-CAGAAAAAAGTTCATAATGAGAAGAACACATCTGA
1 TCAAATCCATCATTGATGGATCAGCTTTTCCAG-AAAAAGTTCATAATGAGAAGAACTCATCTGA
132498 A-AAGGAAGAAGAAATTCATATGAGAAGAATTTGTTCAACCTTTTC
65 AGAAGGAAGAAGAAATTCATATGAGAAGAATTTGTTCAACCTTTTC
* * * *
132543 TCAAATCCATCACTCGATAGATCAGCTTTTCCAGAGATAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCA-TTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
* * *
132608 AGAAAGAAGAAGAAGTTCATAATGAGAAGAATTT-TTCAACCTTTTT
65 AGAAGGAAGAAGAAATTCAT-ATGAGAAGAATTTGTTCAACCTTTTC
** * * * ** *
132654 TTGAATTCATCATTGATGGATCAACATCCCCAGTGAAAGAGTTCATAATGAGAA-AACTCATCTG
1 TCAAATCCATCATTGATGGATCAGCTTTTCCA--GAAAAAGTTCATAATGAGAAGAACTCATCTG
132718 AAGAAGGAAGA
64 AAGAAGGAAGA
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
109 12 0.08
110 57 0.36
111 59 0.37
112 31 0.19
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (110 bp):
TCAAATCCATCATTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAA
GAAGGAAGAAGAAATTCATATGAGAAGAATTTGTTCAACCTTTTC
Done.