genome.fa.s4431.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004431.1 Hibiscus syriacus cultivar Beakdansim tig00009713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71358

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82--149	36	1.9	35	90	3	109	47	19	4	29	1.69
5644--5709	33	2.0	34	93	3	116	50	16	6	27	1.69
7608--7653	20	2.3	19	89	10	74	54	10	17	17	1.70
7783--7824	19	2.3	19	92	8	70	50	11	16	21	1.77
11959--12006	19	2.6	19	93	3	80	31	2	10	56	1.45
12125--14679	198	12.9	198	96	1	4674	36	15	16	31	1.90
12125--14679	397	6.4	396	96	1	4674	36	15	16	31	1.90
12125--14679	596	4.3	595	98	0	4861	36	15	16	31	1.90
16132--16193	18	3.4	18	79	0	79	37	9	35	17	1.83
16132--16223	6	15.3	6	79	0	67	36	7	34	20	1.81
16147--16227	3	27.0	3	75	0	72	35	6	34	23	1.80
16135--16211	36	2.1	36	90	0	118	35	9	35	20	1.85
16135--16223	12	7.4	12	84	0	88	35	7	34	21	1.82
16132--16223	18	5.1	18	77	0	76	36	7	34	20	1.81
17686--18029	184	1.9	184	93	0	589	35	14	16	33	1.89
19921--19984	23	2.8	23	87	0	92	35	6	20	37	1.78
19921--19993	23	3.2	23	82	7	85	34	5	20	39	1.76
20352--20415	23	2.8	23	87	0	92	35	6	20	37	1.78
20352--20424	23	3.2	23	82	7	85	34	5	20	39	1.76
20693--20743	25	2.0	25	92	0	84	33	7	19	39	1.81
20992--21028	18	2.1	18	89	0	56	32	5	10	51	1.60
20984--21030	24	2.0	24	86	0	67	34	4	14	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21287--21373	39	2.2	39	95	0	156	48	20	13	17	1.81
21774--21837	23	2.8	23	87	0	92	35	6	20	37	1.78
21774--21846	23	3.2	23	82	7	85	34	5	20	39	1.76
22620--22650	5	6.2	5	100	0	62	19	0	80	0	0.71
31644--31734	44	2.1	44	91	0	146	46	5	6	41	1.53
31651--31723	22	3.3	22	67	7	67	45	5	8	41	1.57
31751--31816	32	2.1	32	85	2	89	48	1	1	48	1.20
32294--32359	30	2.2	30	88	0	96	43	24	0	31	1.54
33011--33057	2	23.5	2	100	0	94	51	0	0	48	1.00
49749--49830	16	5.1	16	90	0	128	20	26	12	40	1.88
50103--50149	14	3.7	14	71	26	50	44	0	4	51	1.21
50102--50151	23	2.1	24	96	3	93	48	0	4	48	1.20
50445--50481	15	2.4	15	95	4	65	40	2	5	51	1.39
50505--50531	13	2.1	13	100	0	54	55	0	0	44	0.99
50505--50547	13	3.1	14	86	6	52	55	0	2	41	1.12
50831--50900	14	5.1	14	75	5	54	20	0	30	50	1.49
50872--50900	7	4.3	7	91	8	51	13	0	37	48	1.43
50825--50900	20	3.8	20	70	5	55	22	0	27	50	1.50
50876--50900	13	1.9	13	100	0	50	12	0	40	48	1.40
50237--51476	530	2.3	532	88	7	1791	35	9	12	43	1.74
51030--51087	22	2.4	25	83	11	77	55	0	1	43	1.10
51374--51434	21	2.9	21	75	0	68	22	0	22	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51474--51503	2	15.0	2	100	0	60	50	0	0	50	1.00
51873--51970	48	2.1	45	85	11	119	44	14	4	36	1.64
53118--53160	22	2.0	22	81	9	52	48	4	16	30	1.66
55187--55275	32	2.8	32	78	0	97	24	15	23	35	1.94
55932--55998	31	2.2	31	83	5	82	19	11	26	41	1.86
60684--60768	35	2.5	33	78	14	91	27	8	10	54	1.63
64344--64472	49	2.5	51	83	7	147	27	27	23	22	1.99
64839--64881	16	2.6	17	82	10	54	34	2	0	62	1.08
68990--69019	15	2.0	15	93	0	51	30	13	30	26	1.94
71109--71139	3	10.7	3	93	6	55	67	0	0	32	0.91

Tables:   1

The End!