Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004432.1 Hibiscus syriacus cultivar Beakdansim tig00009716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81585
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1091 original size:17 final size:17
Alignment explanation
Indices: 1055--1102 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
1045 TGTTAGTATT
* *
1055 TTATTTAA-TTATTGTA
1 TTATTTAATTTTTTTTA
1071 TTATTTAATTTTTTTTA
1 TTATTTAATTTTTTTTA
*
1088 TTATTTTATTTTTTT
1 TTATTTAATTTTTTT
1103 GCAGTTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 8 0.29
17 20 0.71
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (17 bp):
TTATTTAATTTTTTTTA
Found at i:1099 original size:16 final size:16
Alignment explanation
Indices: 1055--1102 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
1045 TGTTAGTATT
* *
1055 TTATTTAATTATTGTA
1 TTATTTAATTTTTTTA
1071 TTATTTAATTTTTTTTA
1 TTATTTAA-TTTTTTTA
*
1088 TTATTTTATTTTTTT
1 TTATTTAATTTTTTT
1103 GCAGTTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 15 0.54
17 13 0.46
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (16 bp):
TTATTTAATTTTTTTA
Found at i:1383 original size:28 final size:27
Alignment explanation
Indices: 1349--1411 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
1339 TTATAACTGC
*
1349 AAAAAATAAAATAATTAAATTAAATAAT
1 AAAAAATAAAATAA-TAAAATAAATAAT
* *
1377 AAAAAATTAAATAATAAAATAATTAAT
1 AAAAAATAAAATAATAAAATAAATAAT
*
1404 ACAAAATA
1 AAAAAATA
1412 TGATTAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 17 0.57
28 13 0.43
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (27 bp):
AAAAAATAAAATAATAAAATAAATAAT
Found at i:1404 original size:15 final size:15
Alignment explanation
Indices: 1365--1402 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
1355 TAAAATAATT
1365 AAATTAAATAATAAA
1 AAATTAAATAATAAA
1380 AAATTAAATAATAAA
1 AAATTAAATAATAAA
1395 ATAATTAA
1 A-AATTAA
1403 TACAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATTAAATAATAAA
Found at i:4088 original size:42 final size:42
Alignment explanation
Indices: 3991--4089 Score: 117
Period size: 42 Copynumber: 2.4 Consensus size: 42
3981 CGACGTTTGG
* * * * *
3991 AAAAACGCCACTAAATATTATTACTTTTAACAGCGTTTGTAA
1 AAAAACGCCGCTAAATATCATTACATGTAACAGCGTTTATAA
** * *
4033 AAAAATACTGCTAAATATCATTACATGTAGCAGCGTTTATAA
1 AAAAACGCCGCTAAATATCATTACATGTAACAGCGTTTATAA
4075 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
4090 GAACATAACC
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.28
Consensus pattern (42 bp):
AAAAACGCCGCTAAATATCATTACATGTAACAGCGTTTATAA
Found at i:6412 original size:32 final size:33
Alignment explanation
Indices: 6374--6445 Score: 96
Period size: 32 Copynumber: 2.2 Consensus size: 33
6364 CTAACTAAAT
* *
6374 TTAATGACT-ATTTTATAATAATTTGTTA-AAA
1 TTAATGACTCATTTTATAATAATATGATAGAAA
6405 TTAAATGA-TCATTTTATAATAATATGATAGAAA
1 TT-AATGACTCATTTTATAATAATATGATAGAAA
6438 TTAATGAC
1 TTAATGAC
6446 CCTTTATAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
31 3 0.09
32 27 0.77
33 5 0.14
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.43
Consensus pattern (33 bp):
TTAATGACTCATTTTATAATAATATGATAGAAA
Found at i:20629 original size:21 final size:22
Alignment explanation
Indices: 20594--20635 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
20584 CTTCTGATTT
* *
20594 TAAAATTATATTAATTAAAATG
1 TAAAAATATATTAATCAAAATG
20616 TAAAAATAT-TTAATCAAAAT
1 TAAAAATATATTAATCAAAAT
20636 ATATTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
TAAAAATATATTAATCAAAATG
Found at i:22765 original size:12 final size:12
Alignment explanation
Indices: 22748--22774 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22738 ATTTGATCTT
22748 TAAAAAATTAAA
1 TAAAAAATTAAA
22760 TAAAAAATTAAA
1 TAAAAAATTAAA
22772 TAA
1 TAA
22775 TCCTTCAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
TAAAAAATTAAA
Found at i:25430 original size:36 final size:35
Alignment explanation
Indices: 25105--25430 Score: 261
Period size: 36 Copynumber: 9.4 Consensus size: 35
25095 TTCAAAAATT
* *
25105 TATATATTATATAGTTTTTGAAAATATTTTT-AAAA
1 TATATATTATATAG-TTTTAAAAACATTTTTGAAAA
25140 TATA-A-TATATAGTTTTAAAAACA-TTTTGAAAACA
1 TATATATTATATAGTTTTAAAAACATTTTTG-AAA-A
* *
25174 TTTATATATTGTATAGTTTTTAAAACA-TTTTGAAAA
1 --TATATATTATATAGTTTTAAAAACATTTTTGAAAA
*
25210 CTTATATAGTATATAGTTTT-AAAACATTTTTGAAATA
1 --TATATATTATATAGTTTTAAAAACATTTTTGAAA-A
* *
25247 TTATATAATATATAGTTTTAAAAACATTTTTAAAAAA
1 -TATATATTATATAGTTTTAAAAACATTTTT-GAAAA
* *
25284 TTATATAATATATAGTTTTAAAAA-A-CTTTGAAAA
1 -TATATATTATATAGTTTTAAAAACATTTTTGAAAA
* *
25318 -CT-T-TTATAATAATTTT-AAAACA-TTTTGAAAA
1 TATATATTAT-ATAGTTTTAAAAACATTTTTGAAAA
** * *
25349 CTATATAACATATAGTTTTGAAAAC-TTTTTTAAAA
1 -TATATATTATATAGTTTTAAAAACATTTTTGAAAA
* *
25384 TATA-A-TATATAGTTTAAAAAATATTTTTGAAATA
1 TATATATTATATAGTTTTAAAAACATTTTTGAAA-A
25418 TATATATTATATA
1 TATATATTATATA
25431 AATTATATTT
Statistics
Matches: 243, Mismatches: 25, Indels: 45
0.78 0.08 0.14
Matches are distributed among these distances:
30 7 0.03
31 21 0.09
32 23 0.09
33 20 0.08
34 23 0.09
35 29 0.12
36 55 0.23
37 41 0.17
38 24 0.10
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.45
Consensus pattern (35 bp):
TATATATTATATAGTTTTAAAAACATTTTTGAAAA
Found at i:25468 original size:15 final size:14
Alignment explanation
Indices: 25456--25504 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
25446 ATTATTATTA
*
25456 TTATTTATTTTATT
1 TTATTTATTTCATT
25470 TTATTT-TATTCATT
1 TTATTTAT-TTCATT
25484 TTAATTTATTTCATT
1 TT-ATTTATTTCATT
25499 TTATTT
1 TTATTT
25505 TTCTTTTCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
13 1 0.03
14 17 0.55
15 12 0.39
16 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTTATTTCATT
Found at i:25469 original size:5 final size:5
Alignment explanation
Indices: 25445--25505 Score: 63
Period size: 5 Copynumber: 12.2 Consensus size: 5
25435 ATATTTAGTA
* *
25445 TATTAT TATTAT TA-TT TATTT TATTT TATTT TA-TT CATTT TAATT TATTT
1 TATT-T TATT-T TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT
*
25495 CATTT TATTT T
1 TATTT TATTT T
25506 TCTTTTCCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
4 6 0.13
5 33 0.70
6 8 0.17
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (5 bp):
TATTT
Found at i:25484 original size:19 final size:19
Alignment explanation
Indices: 25445--25494 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
25435 ATATTTAGTA
*
25445 TATTATTATTATTATTTATTT
1 TATT-TTATT-TTATTCATTT
25466 TATTTTATTTTATTCATTT
1 TATTTTATTTTATTCATTT
*
25485 TAATTTATTT
1 TATTTTATTT
25495 CATTTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 18 0.67
20 5 0.19
21 4 0.15
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (19 bp):
TATTTTATTTTATTCATTT
Found at i:27637 original size:21 final size:21
Alignment explanation
Indices: 27611--27657 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
27601 TTTGAAATTA
27611 CTCCCCCTTACTTTAACACTT
1 CTCCCCCTTACTTTAACACTT
27632 CTCCCCCTTACTTTAACACTT
1 CTCCCCCTTACTTTAACACTT
27653 CTCCC
1 CTCCC
27658 ATTTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.17, C:0.47, G:0.00, T:0.36
Consensus pattern (21 bp):
CTCCCCCTTACTTTAACACTT
Found at i:29538 original size:24 final size:22
Alignment explanation
Indices: 29496--29550 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
29486 AAACACAATA
29496 ATTTGAAAATTAACATTTTTTT
1 ATTTGAAAATTAACATTTTTTT
29518 ATTTCGAAAATTTAA-ATTTTTTT
1 ATTT-GAAAA-TTAACATTTTTTT
*
29541 -TTGGAAAATT
1 ATTTGAAAATT
29551 CTTGTGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 2 0.07
21 5 0.17
22 6 0.20
23 13 0.43
24 4 0.13
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (22 bp):
ATTTGAAAATTAACATTTTTTT
Found at i:29934 original size:20 final size:21
Alignment explanation
Indices: 29904--29942 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
29894 CAGAACCACA
29904 GGGGGGTATCGATTCCCCTGT
1 GGGGGGTATCGATTCCCCTGT
*
29925 GGGGGG-ATCGCTTCCCCT
1 GGGGGGTATCGATTCCCCT
29943 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.08, C:0.28, G:0.38, T:0.26
Consensus pattern (21 bp):
GGGGGGTATCGATTCCCCTGT
Found at i:33691 original size:21 final size:21
Alignment explanation
Indices: 33649--33692 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
33639 TCAAAAGAAG
*
33649 TTTTAAGATCATCAATTTTCT
1 TTTTAAGATCATCAATTATCT
*
33670 TTTTATGATCATC-ATTGATCT
1 TTTTAAGATCATCAATT-ATCT
33691 TT
1 TT
33693 GAAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
TTTTAAGATCATCAATTATCT
Found at i:37496 original size:20 final size:20
Alignment explanation
Indices: 37467--37509 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
37457 TATATTGGGC
* * *
37467 TATTGTCTATTGTTTATGGT
1 TATTGCCTATGGTATATGGT
37487 TATTGCCTATGGTATATGGT
1 TATTGCCTATGGTATATGGT
37507 TAT
1 TAT
37510 GGAATAATGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.07, G:0.21, T:0.53
Consensus pattern (20 bp):
TATTGCCTATGGTATATGGT
Found at i:37575 original size:45 final size:44
Alignment explanation
Indices: 37506--37646 Score: 201
Period size: 46 Copynumber: 3.1 Consensus size: 44
37496 TGGTATATGG
* * * *
37506 TTATGGAATAATGGCAAGTGTATTGGTAAAATAAGCTTATGAGC
1 TTATGGAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
*
37550 TTATGGAACAAATGGTAAGTATATTGGTAAAATAAGCTTGCGAGC
1 TTATGGAA-AAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
*
37595 TTATGGTATTAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
1 TTATGG-A-AAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
37641 TTATGG
1 TTATGG
37647 GATACATGGT
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
44 8 0.09
45 37 0.43
46 42 0.48
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (44 bp):
TTATGGAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
Found at i:37626 original size:46 final size:44
Alignment explanation
Indices: 37506--37659 Score: 202
Period size: 45 Copynumber: 3.4 Consensus size: 44
37496 TGGTATATGG
* * *
37506 TTATGGA-ATAATGGCAAGTGTATTGGTAAAATAAGCTTATGAGC
1 TTATGGATA-AATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
* *
37550 TTATGGAACAAATGGTAAGTATATTGGTAAAATAAGCTTGCGAGC
1 TTATGG-ATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
37595 TTATGGTATTAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
1 TTATGG-A-TAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
*
37641 TTATGGGATACATGGTAAG
1 TTAT-GGATAAATGGTAAG
37660 AGATTTTATA
Statistics
Matches: 98, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
44 6 0.06
45 49 0.50
46 41 0.42
47 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (44 bp):
TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
Found at i:42482 original size:17 final size:17
Alignment explanation
Indices: 42460--42492 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
42450 TTCCCTCCTA
42460 AAAATAAGAGAAATGAT
1 AAAATAAGAGAAATGAT
42477 AAAATAAGAGAAATGA
1 AAAATAAGAGAAATGA
42493 CAAGACCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.15
Consensus pattern (17 bp):
AAAATAAGAGAAATGAT
Found at i:42886 original size:110 final size:110
Alignment explanation
Indices: 42693--43458 Score: 1164
Period size: 110 Copynumber: 7.0 Consensus size: 110
42683 GATGGTGGTT
* * *
42693 GCTCAACTTCACAGCGAAGGGGCGACTAACGGTCAACAAATAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
*
42758 AATTTTAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
* * * * *
42803 GCTCAACTTCACAGCAAAGAGGCGACTGATTGTCAACAAACAACTTTTCAGTTTCTTTCATAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
* *
42868 AATTTTAACTTCACAACGAAGGATATTGGACTCGAGACAACATAA
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
*
42913 GCTCAACTTCACAGCGAATGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
*
42978 AATTTAAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
* *
43023 GCTAAACTTCACAGCGAAGGGACGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
* * *
43088 AATTTCAACTTCAGAGCGAATGATATTGGACTCGAGACAACACAA
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
* *
43133 GCTCAACTTCACAGCAAAAGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
* * * * *
43198 AATTTCAACTTCATAGCAAAAGATATTGGACTCAAGACAACACAA
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
*
43243 GCTCAACTTCACATCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
* *
43308 AATTTCAACTTCACAGCGAAAGATATTGGACTCGAGACAACACAA
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
* * *
43353 GCTCAACTTCACAGCGAAGGGGAGGCT-AGCTGTCAACAAACAACTTTCCA--TT--TTCAGAGT
1 GCTCAACTTCACAGCGAAGGGGCGACTGA-CTGTCAACAAACAACTTTTCAGTTTCATTCAGAGT
* * * * *
43413 TAATTTCAACTTCACAACAAAGGATATTGGCCTCGAAATAACACAA
65 CAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
43459 ATTTTTGGAT
Statistics
Matches: 606, Mismatches: 49, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
106 47 0.08
108 2 0.00
109 1 0.00
110 556 0.92
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (110 bp):
GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
Found at i:43711 original size:84 final size:84
Alignment explanation
Indices: 43565--44018 Score: 479
Period size: 84 Copynumber: 5.4 Consensus size: 84
43555 AATCGTACCC
* * * **
43565 ACCAAAGGCCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAATATAACTTAAGT
1 ACCAAAGACCTTCGAGTTTCACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGT
43630 CGAGAAGGGTTATCTGCCA
66 CGAGAAGGGTTATCTGCCA
* * *
43649 ACCAAAGACCTTCGAGTTTCACTACACTCAGCTCCAAGACATATCATTTGCAGCATAGCTTAAGT
1 ACCAAAGACCTTCGAGTTTCACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGT
43714 CGAGAAGGGTTATCTGCCA
66 CGAGAAGGGTTATCTGCCA
* * * * * * * * *
43733 ACCGAATACCCTCGAG-TTCGATTACACTCAGCTTCGAGGCACATCATTTACAACATAACTCAAG
1 ACCAAAGACCTTCGAGTTTC-ACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAG
* * * *
43797 GCTAGAAGTGTTA-CATGTC-
65 TCGAGAAGGGTTATC-TGCCA
* ** *
43816 ACCAAAAAACCTTCGAGTTAGACTA-AGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAA
1 ACC-AAAGACCTTCGAGTTTCACTACA-CTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAA
43880 GTCGAGAAGGGTTATCTGCCA
64 GTCGAGAAGGGTTATCTGCCA
** * * *
43901 ACGGAAGACCTTCGAG-TTCGATTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAG
1 ACCAAAGACCTTCGAGTTTC-ACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAG
* *
43965 TCGATAA-GGTCTATTTGCCA
65 TCGAGAAGGGT-TATCTGCCA
* * * * *
43985 ACCGAAGACCTTTGAGTTTGATTACACTAAGCTC
1 ACCAAAGACCTTCGAGTTTCACTACACTCAGCTC
44019 ATATGCAAAC
Statistics
Matches: 303, Mismatches: 56, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
83 12 0.04
84 285 0.94
85 6 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (84 bp):
ACCAAAGACCTTCGAGTTTCACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGT
CGAGAAGGGTTATCTGCCA
Found at i:44102 original size:252 final size:251
Alignment explanation
Indices: 43573--44063 Score: 630
Period size: 252 Copynumber: 1.9 Consensus size: 251
43563 CCACCAAAGG
* * *
43573 CCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAATATAACTTAAGTCGAGAAGG
1 CCTTCGAGTTAGACTAAGCTCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCGAGAAGG
*
43638 GTTATCTGCCAACCAAAGACCTTCGAGTTTCACTACACTCAGCTCCAAGACATATCATTTGCAGC
66 GTTATCTGCCAACCAAAGACCTTCGAGTTTCACTACACTCAGCTCCAAGACACATCATTTGCAGC
* *
43703 ATAGCTTAAGTCGAGAAGGGTTATCTGCCAACCGAATACCCTCGAGTTCGATTACACTCAGCTTC
131 ATAGCTTAAGTCGAGAAGGGTTATCTGCCAACCGAAGACCCTCGAGTTCGATTACACTAAGCTTC
* * * * * * *
43768 GAGGCACATCATTTACAACATAACTCAAGGCTAGAAGTGTTACATGTCACCAAAAAA
196 GAGGCAAACCATTTACAACATAACCCAAGACAAGAAGGGCTACATGTCA-CAAAAAA
* *
43825 CCTTCGAGTTAGACTAAGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGG
1 CCTTCGAGTTAGACTAAGCTCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCGAGAAGG
** * * *
43890 GTTATCTGCCAACGGAAGACCTTCGAG-TTCGATTACGCTCAGCTCCAAGGCACATCATTTGCAG
66 GTTATCTGCCAACCAAAGACCTTCGAGTTTC-ACTACACTCAGCTCCAAGACACATCATTTGCAG
* * * * *
43954 CATAGCTTAAGTCGATAA-GGTCTATTTGCCAACCGAAGACCTTTGAGTTTGATTACACTAAGC-
130 CATAGCTTAAGTCGAGAAGGGT-TATCTGCCAACCGAAGACCCTCGAGTTCGATTACACTAAGCT
* * * *
44017 TCATATGCAAACCAAATTTACAGA-ATAACCCCAGACAATAAGGGCTA
194 TC-GAGGCAAACC--ATTTACA-ACATAACCCAAGACAAGAAGGGCTA
44064 TCTGTCAATA
Statistics
Matches: 204, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
251 8 0.04
252 172 0.84
254 23 0.11
255 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (251 bp):
CCTTCGAGTTAGACTAAGCTCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCGAGAAGG
GTTATCTGCCAACCAAAGACCTTCGAGTTTCACTACACTCAGCTCCAAGACACATCATTTGCAGC
ATAGCTTAAGTCGAGAAGGGTTATCTGCCAACCGAAGACCCTCGAGTTCGATTACACTAAGCTTC
GAGGCAAACCATTTACAACATAACCCAAGACAAGAAGGGCTACATGTCACAAAAAA
Found at i:44778 original size:33 final size:32
Alignment explanation
Indices: 44740--44801 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
44730 TCCGAAAATT
* * *
44740 TATATATTATATAGTTTTTGAAAATATTTTTAA
1 TATATAATATATAG-TGTTGAAAACATTTTTAA
44773 TATATAATATATAGTGTTGAAAACATTTT
1 TATATAATATATAGTGTTGAAAACATTTT
44802 GAAAACATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.50
33 13 0.50
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (32 bp):
TATATAATATATAGTGTTGAAAACATTTTTAA
Found at i:44805 original size:11 final size:11
Alignment explanation
Indices: 44789--44822 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
44779 ATATATAGTG
44789 TTGAAAACATT
1 TTGAAAACATT
44800 TTGAAAACATT
1 TTGAAAACATT
44811 TTGAAAACATT
1 TTGAAAACATT
44822 T
1 T
44823 ATATATTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (11 bp):
TTGAAAACATT
Found at i:45006 original size:39 final size:37
Alignment explanation
Indices: 44798--45158 Score: 324
Period size: 37 Copynumber: 10.0 Consensus size: 37
44788 GTTGAAAACA
* * *
44798 TTTTGAAAACA-TTTTGAAAACATTTATATATTGTATAG
1 TTTTAAAAACATTTTTGAAAA-A-TTATATAATATATAG
* * *
44836 TTTTTAAAACA-TTTTGAAAACTTATATAGTATATAG
1 TTTTAAAAACATTTTTGAAAAATTATATAATATATAG
* *
44872 TTTTTAAAATATTTTTGAAAAATTATATAATATATAG
1 TTTTAAAAACATTTTTGAAAAATTATATAATATATAG
* * *
44909 TTCTAAAAACATTTTTGAAAAATTATATAATAAATAA
1 TTTTAAAAACATTTTTGAAAAATTATATAATATATAG
*
44946 TTTTAAAAAAAACATTTTTTAAAAAATTATATAATATATAG
1 TTTT---AAAAACA-TTTTTGAAAAATTATATAATATATAG
**
44987 TTTTAAAAACATTTTTTTAAAATATATATAATATATAG
1 TTTTAAAAACATTTTTGAAAAAT-TATATAATATATAG
*
45025 TTTTAAAAAACAATTTTTGAAAACTTATAT-A-ATAT--
1 TTTT-AAAAAC-ATTTTTGAAAAATTATATAATATATAG
* *
45060 TTTT-AAAACA-TTTTG-AAAACTATAT-A-ACATAG
1 TTTTAAAAACATTTTTGAAAAATTATATAATATATAG
*
45092 TTTTGAAAAC-TTTTT--AAAA--ATATAATATATAG
1 TTTTAAAAACATTTTTGAAAAATTATATAATATATAG
* * * *
45124 TTTAAAAAATATTTTTGAAATA-TATATATTATATA
1 TTTTAAAAACATTTTTGAAAAATTATATAATATATA
45159 AATTATATTT
Statistics
Matches: 275, Mismatches: 30, Indels: 38
0.80 0.09 0.11
Matches are distributed among these distances:
30 16 0.06
31 6 0.02
32 21 0.08
33 19 0.07
35 7 0.03
36 34 0.12
37 72 0.26
38 45 0.16
39 11 0.04
40 17 0.06
41 27 0.10
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (37 bp):
TTTTAAAAACATTTTTGAAAAATTATATAATATATAG
Found at i:45086 original size:30 final size:29
Alignment explanation
Indices: 45039--45119 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 29
45029 AAAAAACAAT
*
45039 TTTTGAAAACTTATATAATATTTTTAAAAC
1 TTTTGAAAAC-TATATAATATTTTGAAAAC
45069 ATTTTGAAAACTATATAACATAGTTTTGAAAAC
1 -TTTTGAAAACTATAT-A-ATA-TTTTGAAAAC
*
45102 TTTTTAAAA--ATATAATAT
1 TTTTGAAAACTATATAATAT
45120 ATAGTTTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
27 1 0.02
28 3 0.07
29 1 0.02
30 9 0.20
31 11 0.24
32 11 0.24
33 9 0.20
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.43
Consensus pattern (29 bp):
TTTTGAAAACTATATAATATTTTGAAAAC
Found at i:45186 original size:5 final size:5
Alignment explanation
Indices: 45176--45231 Score: 57
Period size: 5 Copynumber: 11.8 Consensus size: 5
45166 TTTAGTATAT
* *
45176 TTTTA TTTTA TTTTA -TTCA TTTTA -TTTA TTTT- TATTTA TTTCA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA TTTTA
45224 TTTT- TTTT
1 TTTTA TTTT
45232 CCAGGTCCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
4 12 0.28
5 30 0.70
6 1 0.02
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:45191 original size:10 final size:10
Alignment explanation
Indices: 45176--45231 Score: 57
Period size: 9 Copynumber: 5.9 Consensus size: 10
45166 TTTAGTATAT
45176 TTTTATTTTA
1 TTTTATTTTA
*
45186 TTTTA-TTCA
1 TTTTATTTTA
45195 TTTTA-TTTA
1 TTTTATTTTA
45204 TTTT-TATTTA
1 TTTTAT-TTTA
*
45214 TTTCATTTTA
1 TTTTATTTTA
45224 TTTT-TTTT
1 TTTTATTTT
45232 CCAGGTCCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 19 0.49
10 19 0.49
11 1 0.03
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:45199 original size:14 final size:13
Alignment explanation
Indices: 45180--45226 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
45170 GTATATTTTT
45180 ATTTTATTTTATTC
1 ATTTTA-TTTATTC
45194 ATTTTATTTA-T-
1 ATTTTATTTATTC
45205 -TTTTATTTATTTC
1 ATTTTATTTA-TTC
45218 ATTTTATTT
1 ATTTTATTT
45227 TTTTTCCAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
10 9 0.31
12 2 0.07
13 4 0.14
14 14 0.48
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (13 bp):
ATTTTATTTATTC
Found at i:45200 original size:19 final size:19
Alignment explanation
Indices: 45176--45227 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
45166 TTTAGTATAT
45176 TTTTATTTTATTTTATTCA
1 TTTTATTTTATTTTATTCA
*
45195 TTTTA-TTTATTTTTATTTA
1 TTTTATTTTA-TTTTATTCA
*
45214 TTTCATTTTATTTT
1 TTTTATTTTATTTT
45228 TTTTCCAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 4 0.14
19 21 0.72
20 4 0.14
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTATTTTATTTTATTCA
Found at i:45218 original size:24 final size:24
Alignment explanation
Indices: 45177--45231 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
45167 TTAGTATATT
45177 TTTA-TTTTATTTTATTCATTTTA
1 TTTATTTTTATTTTATTCATTTTA
45200 TTTATTTTTA-TTTATTTCATTTTA
1 TTTATTTTTATTTTA-TTCATTTTA
45224 TTT-TTTTT
1 TTTATTTTT
45232 CCAGGTCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 13 0.43
24 17 0.57
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTATTTTTATTTTATTCATTTTA
Found at i:48290 original size:65 final size:67
Alignment explanation
Indices: 48194--48329 Score: 179
Period size: 65 Copynumber: 2.1 Consensus size: 67
48184 TAAGAGTCAT
* * * *
48194 ATATTTTACTAAAATAAAAATAATATAAATTATATTAATTGTTTATTAAAAT-A-AGTA-TATTA
1 ATATATTACTAAAATAAAAATAATATAAATTACATTAATTATTTATTAAAATGATAATATTATTA
48256 TA
66 TA
* * *
48258 ATATATTATTAAAATAATAAATATTATTAATTACATTAATTATTTATTAAAATGATAATATTATT
1 ATATATTACTAAAATAA-AAATAATATAAATTACATTAATTATTTATTAAAATGATAATATTATT
48323 ATA
65 ATA
48326 ATAT
1 ATAT
48330 TAAAAATTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
64 15 0.25
65 31 0.51
66 1 0.02
67 3 0.05
68 11 0.18
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (67 bp):
ATATATTACTAAAATAAAAATAATATAAATTACATTAATTATTTATTAAAATGATAATATTATTA
TA
Found at i:48340 original size:15 final size:15
Alignment explanation
Indices: 48320--48349 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
48310 TGATAATATT
48320 ATTATAATATTAAAA
1 ATTATAATATTAAAA
48335 ATTATAATATTAAAA
1 ATTATAATATTAAAA
48350 TACGAACCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTATAATATTAAAA
Found at i:48411 original size:21 final size:21
Alignment explanation
Indices: 48360--48411 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
48350 TACGAACCTT
48360 ATATTATATTTTGAAAATATCA
1 ATATTATATTTT-AAAATATCA
* *
48382 ATAAATATATTTT-AAATATGTA
1 AT-ATTATATTTTAAAATAT-CA
48404 ATATTATA
1 ATATTATA
48412 ATAATAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 11 0.44
22 5 0.20
23 9 0.36
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (21 bp):
ATATTATATTTTAAAATATCA
Found at i:49401 original size:15 final size:15
Alignment explanation
Indices: 49380--49499 Score: 195
Period size: 15 Copynumber: 8.0 Consensus size: 15
49370 TAATAAGGTT
*
49380 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
*
49395 GTTTATTATAAAATA
1 ATTTATTATAAAATA
49410 ATTTATTATAAAATA
1 ATTTATTATAAAATA
49425 ATTTATTATAAAATA
1 ATTTATTATAAAATA
*
49440 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
49455 ATTTATTATAAAATA
1 ATTTATTATAAAATA
*
49470 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
*
49485 AATTATTATAAAATA
1 ATTTATTATAAAATA
49500 TGGATTGATT
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 97 1.00
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (15 bp):
ATTTATTATAAAATA
Found at i:49416 original size:30 final size:30
Alignment explanation
Indices: 49380--49542 Score: 220
Period size: 30 Copynumber: 5.2 Consensus size: 30
49370 TAATAAGGTT
*
49380 ATTTATTTTAAAATAGTTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
*
49410 ATTTATTATAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
49440 ATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
*
49470 ATTTATTTTAAAATAAATTATTATAAAATATGGA
1 ATTTATTTTAAAATAATTTATTAT-AAA-AT--A
*
49504 TTGATTTATTTTAAAATAATTTATT-TTAAATA
1 ---ATTTATTTTAAAATAATTTATTATAAAATA
49536 ATTTATT
1 ATTTATT
49543 AGTATGTATT
Statistics
Matches: 120, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
29 7 0.06
30 80 0.67
31 3 0.03
32 3 0.03
34 3 0.03
35 2 0.02
36 1 0.01
37 21 0.17
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.50
Consensus pattern (30 bp):
ATTTATTTTAAAATAATTTATTATAAAATA
Found at i:49437 original size:45 final size:45
Alignment explanation
Indices: 49380--49543 Score: 213
Period size: 45 Copynumber: 3.5 Consensus size: 45
49370 TAATAAGGTT
*
49380 ATTTATTTTAAAATAGTTTATTATAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTATAAAATA
* *
49425 ATTTATTATAAAATAATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTATAAAATA
* *
49470 ATTTATTTTAAAATAAATTATTATAAAATATGGATTGATTTATTTTAAAATA
1 ATTTATTTTAAAATAATTTATTAT-AAA-AT--A---ATTTATTATAAAATA
49522 ATTTATTTT-AAATAATTTATTA
1 ATTTATTTTAAAATAATTTATTA
49544 GTATGTATTG
Statistics
Matches: 104, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
45 63 0.61
46 3 0.03
47 2 0.02
49 1 0.01
51 12 0.12
52 23 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (45 bp):
ATTTATTTTAAAATAATTTATTATAAAATAATTTATTATAAAATA
Found at i:49527 original size:15 final size:14
Alignment explanation
Indices: 49507--49542 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
49497 ATATGGATTG
49507 ATTTATTTTAAAATA
1 ATTTATTTT-AAATA
49522 ATTTATTTTAAATA
1 ATTTATTTTAAATA
49536 ATTTATT
1 ATTTATT
49543 AGTATGTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:49536 original size:14 final size:15
Alignment explanation
Indices: 49380--49542 Score: 193
Period size: 15 Copynumber: 10.5 Consensus size: 15
49370 TAATAAGGTT
49380 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
49395 GTTTATTATAAAATA
1 ATTTATTTTAAAATA
*
49410 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
49425 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
49440 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
49455 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
49470 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
49485 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
49504 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
49522 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
49536 ATTTATT
1 ATTTATT
49543 AGTATGTATT
Statistics
Matches: 131, Mismatches: 10, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
14 12 0.09
15 99 0.76
16 4 0.03
17 2 0.02
18 1 0.01
19 1 0.01
20 2 0.02
21 4 0.03
22 6 0.05
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:49560 original size:32 final size:32
Alignment explanation
Indices: 49522--49619 Score: 117
Period size: 32 Copynumber: 3.4 Consensus size: 32
49512 TTTTAAAATA
49522 ATTTATTTTAAATAATTTATTAGTATGTATTG
1 ATTTATTTTAAATAATTTATTAGTATGTATTG
49554 ATTTA-TTT---TAA---A--A-TATGTATTG
1 ATTTATTTTAAATAATTTATTAGTATGTATTG
*
49576 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGTATTG
49608 ATTTATTTTAAA
1 ATTTATTTTAAA
49620 ATATGGATTG
Statistics
Matches: 55, Mismatches: 1, Indels: 20
0.72 0.01 0.26
Matches are distributed among these distances:
22 14 0.25
23 4 0.07
25 1 0.02
26 3 0.05
28 3 0.05
29 1 0.02
31 4 0.07
32 25 0.45
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGTATTG
Found at i:49579 original size:69 final size:67
Alignment explanation
Indices: 49440--49597 Score: 203
Period size: 69 Copynumber: 2.3 Consensus size: 67
49430 TTATAAAATA
49440 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
49505 TG
66 TG
* ** * * * *
49507 ATTTATTTTAAAATAATTTATT-TTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATG
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATT--T-TAAAATAAATTATTATAAAATATG
*
49571 TATTG
63 GATTG
49576 ATTTATTTT-AAATAATTTATTA
1 ATTTATTTTAAAATAATTTATTA
49598 GTATGGATTG
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
66 13 0.16
67 22 0.28
68 13 0.16
69 31 0.39
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (67 bp):
ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
TG
Found at i:49587 original size:54 final size:54
Alignment explanation
Indices: 49522--49802 Score: 246
Period size: 54 Copynumber: 5.1 Consensus size: 54
49512 TTTTAAAATA
* *
49522 ATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATGTATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
49576 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
49630 ATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTT-AA-AA--TA-T-G----GATTG
* * * *
49688 ATTTATTTT-AA-AA--TA-TAG-ATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGA-TTT--AT--TTTA-AAATATGGATTG
*
49742 ATTTATTTTAAATAATTTATTAGTATGGATTGGTTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
49796 ATTTATT
1 ATTTATT
49803 ATTGTAGTTG
Statistics
Matches: 186, Mismatches: 12, Indels: 58
0.73 0.05 0.23
Matches are distributed among these distances:
48 22 0.12
49 4 0.02
50 4 0.02
52 4 0.02
53 1 0.01
54 89 0.48
55 6 0.03
56 2 0.01
57 2 0.01
58 21 0.11
59 11 0.06
60 12 0.06
61 3 0.02
62 2 0.01
63 3 0.02
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:49596 original size:22 final size:22
Alignment explanation
Indices: 49487--49587 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
49477 TTAAAATAAA
* *
49487 TTATTATAAAATATGGATTGAT
1 TTATTTTAAAATATGTATTGAT
* * *
49509 TTATTTTAAAATAATTTATTTTAA
1 TTATTTTAAAAT-ATGTA-TTGAT
* * * *
49533 ATAATTTATTAGTATGTATTGAT
1 TTATTTTA-AAATATGTATTGAT
49556 TTATTTTAAAATATGTATTGAT
1 TTATTTTAAAATATGTATTGAT
49578 TTATTTTAAA
1 TTATTTTAAA
49588 TAATTTATTA
Statistics
Matches: 60, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
22 33 0.55
23 12 0.20
24 13 0.22
25 2 0.03
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (22 bp):
TTATTTTAAAATATGTATTGAT
Found at i:49615 original size:22 final size:23
Alignment explanation
Indices: 49590--49663 Score: 71
Period size: 22 Copynumber: 3.2 Consensus size: 23
49580 ATTTTAAATA
49590 ATTTAT-TAGTATGGATTGATTT
1 ATTTATATAGTATGGATTGATTT
* *
49612 ATTT-TAAAATATGGATTGATTT
1 ATTTATATAGTATGGATTGATTT
* *
49634 ATTATTGTAGTTGTATGGATTGATTT
1 A-T-TTATA-TAGTATGGATTGATTT
49660 ATTT
1 ATTT
49664 TAAATAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
21 1 0.02
22 19 0.45
23 1 0.02
24 4 0.10
25 3 0.07
26 14 0.33
ACGTcount: A:0.28, C:0.00, G:0.18, T:0.54
Consensus pattern (23 bp):
ATTTATATAGTATGGATTGATTT
Found at i:49667 original size:80 final size:80
Alignment explanation
Indices: 49567--49860 Score: 455
Period size: 80 Copynumber: 3.6 Consensus size: 80
49557 TATTTTAAAA
* *
49567 TATGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGAT
49632 TTATTATTGTAGTTG
66 TTATTATTGTAGTTG
*
49647 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATAGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGAT
*
49712 TTATTTTAAATAATTTA-TTAG
66 TTA--TT--AT--TGTAGTT-G
* *
49733 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGGTTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGAT
49798 TTATTATTGTAGTTG
66 TTATTATTGTAGTTG
*
49813 TATGGATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTATT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATT
49861 ATTGTAGTTG
Statistics
Matches: 195, Mismatches: 11, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
80 114 0.58
81 2 0.01
82 4 0.02
84 4 0.02
85 2 0.01
86 69 0.35
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (80 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGAT
TTATTATTGTAGTTG
Found at i:49692 original size:32 final size:32
Alignment explanation
Indices: 49646--49785 Score: 192
Period size: 32 Copynumber: 4.7 Consensus size: 32
49636 TATTGTAGTT
49646 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
49678 GTATAGATTGATTTATTTT--A-AA---A-TA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
49703 -TA--GATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
49732 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
49764 GTATGGATTGGTTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
49786 ATATGGATTG
Statistics
Matches: 96, Mismatches: 2, Indels: 20
0.81 0.02 0.17
Matches are distributed among these distances:
22 14 0.15
24 3 0.03
25 4 0.04
26 1 0.01
28 1 0.01
29 4 0.04
30 3 0.03
32 66 0.69
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:49695 original size:166 final size:166
Alignment explanation
Indices: 49560--49923 Score: 550
Period size: 166 Copynumber: 2.2 Consensus size: 166
49550 ATTGATTTAT
*
49560 TTTA-AAATATGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATAT
1 TTTATAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATAT
49624 GGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGA
66 GGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGA
* *
49689 TTTATTTTAAAATATAGATTGATTTATTTTAAATAA
131 TTTATTTTAAAATATAGATTGATGTATTTGAAATAA
* * *
49725 TTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGGTTTATTTTAAAATAT
1 TTTATAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATAT
*
49790 GGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTTGTATAGATTGA
66 GGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGA
*** * * *
49855 TTTATTATTGTAGTTGTATCGATTGATTTATTTTAAATAA
131 TTTA-T-TT-TA-AAATATAGATTGATGTATTTGAAATAA
* *
49895 TTTATTAGTATGGATTGATTTATTTTAAA
1 TTTATAAATATGGATTGATTTATTTTAAA
49924 ATATGAATTG
Statistics
Matches: 185, Mismatches: 9, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
165 4 0.02
166 124 0.67
167 1 0.01
168 2 0.01
169 2 0.01
170 52 0.28
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (166 bp):
TTTATAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATAT
GGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGA
TTTATTTTAAAATATAGATTGATGTATTTGAAATAA
Found at i:49704 original size:22 final size:22
Alignment explanation
Indices: 49679--49721 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
49669 AATTTATTAG
49679 TATAGATTGATTTATTTTAAAA
1 TATAGATTGATTTATTTTAAAA
49701 TATAGATTGATTTATTTTAAA
1 TATAGATTGATTTATTTTAAA
49722 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (22 bp):
TATAGATTGATTTATTTTAAAA
Found at i:49853 original size:32 final size:32
Alignment explanation
Indices: 49810--49923 Score: 141
Period size: 32 Copynumber: 3.8 Consensus size: 32
49800 ATTATTGTAG
49810 TTGTATGGATTGATTTATTTTAAATAATTTAT
1 TTGTATGGATTGATTTATTTTAAATAATTTAT
* * *
49842 TTGTATAGATTGATTTA--TT--AT--TGTAG
1 TTGTATGGATTGATTTATTTTAAATAATTTAT
*
49868 TTGTATCGATTGATTTATTTTAAATAATTTAT
1 TTGTATGGATTGATTTATTTTAAATAATTTAT
*
49900 TAGTATGGATTGATTTATTTTAAA
1 TTGTATGGATTGATTTATTTTAAA
49924 ATATGAATTG
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 19 0.28
28 4 0.06
30 4 0.06
32 41 0.60
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (32 bp):
TTGTATGGATTGATTTATTTTAAATAATTTAT
Found at i:49878 original size:26 final size:26
Alignment explanation
Indices: 49791--49886 Score: 102
Period size: 26 Copynumber: 3.5 Consensus size: 26
49781 TTAAAATATG
*
49791 GATTGATTTATTATTGTAGTTGTATG
1 GATTGATTTATTATTGTAGTTGTATA
* *
49817 GATTGATTTATTTTAAATAATTTATTTGTATA
1 GATTGATTTA--TT--AT--TGTAGTTGTATA
*
49849 GATTGATTTATTATTGTAGTTGTATC
1 GATTGATTTATTATTGTAGTTGTATA
49875 GATTGATTTATT
1 GATTGATTTATT
49887 TTAAATAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
26 31 0.53
28 4 0.07
30 4 0.07
32 19 0.33
ACGTcount: A:0.27, C:0.01, G:0.17, T:0.55
Consensus pattern (26 bp):
GATTGATTTATTATTGTAGTTGTATA
Found at i:49928 original size:22 final size:22
Alignment explanation
Indices: 49903--49945 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
49893 AATTTATTAG
*
49903 TATGGATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
49925 TATGAATTGTTTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
49946 TAATTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:49945 original size:54 final size:54
Alignment explanation
Indices: 49647--49955 Score: 263
Period size: 54 Copynumber: 5.6 Consensus size: 54
49637 ATTGTAGTTG
* *
49647 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
49701 TAT-AGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAA
1 TATGA-ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
** ** * * * ***
49754 TAATTTATTAGTATGGATTGGTT---TATTTTA-AAATATGGATTGATTTATTATTGTAGTTG
1 T-ATGAATT-G-ATTTATT--TTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAA
* * * ** *
49813 TATGGATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTATTGTAG
1 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATT-TTAAAA
49868 T-TGTATCGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATG-A---ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
49925 TATGAATTGTTTTATTTTAAATAATTTATTA
1 TATGAATTGATTTATTTTAAATAATTTATTA
49956 TTGTAGTTGT
Statistics
Matches: 204, Mismatches: 29, Indels: 44
0.74 0.10 0.16
Matches are distributed among these distances:
53 4 0.02
54 96 0.47
55 11 0.05
56 14 0.07
57 15 0.07
58 63 0.31
59 1 0.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (54 bp):
TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:50005 original size:31 final size:31
Alignment explanation
Indices: 49970--50028 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
49960 AGTTGTATGG
*
49970 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGTAAAACTAAA
50001 ATTATTTAAATCTCAGTATTGTAAAACT
1 ATTATTTAAATCTCAGTATTGTAAAACT
50029 CTTTTAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGTAAAACTAAA
Found at i:57155 original size:110 final size:109
Alignment explanation
Indices: 56953--57161 Score: 319
Period size: 110 Copynumber: 1.9 Consensus size: 109
56943 TTCAAACAGA
* *
56953 GGCAACAAAGATCAAGTATTGAAGATCCCATATCCAGGCAACAAAGAAGTAAATCCCTTAGGTGC
1 GGCAACAAAGATCAAGCATTGAAGATCCCATAGCCAGGCAACAAAGAAGTAAATCCCTTAGGTGC
* *
57018 GGAAGCAGAAAAGTAATGAGGCAGACCCATAAGATACCAAATGG
66 AGAAGCAGAAAAGTAATGAGGCAGACCCAGAAGATACCAAATGG
* * * * *
57062 GGCACACAATGATCAAGCGTTGAAGATCCCATAGCCGGGCAGCAAAGAAGTAAATCCTTTAGGTG
1 GGCA-ACAAAGATCAAGCATTGAAGATCCCATAGCCAGGCAACAAAGAAGTAAATCCCTTAGGTG
*
57127 TAGAAGCAGAAAAGTAATGAGGCAGACCCAGAAGA
65 CAGAAGCAGAAAAGTAATGAGGCAGACCCAGAAGA
57162 CACCTCAACA
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
109 4 0.04
110 85 0.96
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.15
Consensus pattern (109 bp):
GGCAACAAAGATCAAGCATTGAAGATCCCATAGCCAGGCAACAAAGAAGTAAATCCCTTAGGTGC
AGAAGCAGAAAAGTAATGAGGCAGACCCAGAAGATACCAAATGG
Found at i:65097 original size:156 final size:156
Alignment explanation
Indices: 64822--65129 Score: 517
Period size: 156 Copynumber: 2.0 Consensus size: 156
64812 AGAAAGCTGA
* * *
64822 TCCCTCTCAAGCATAACTGATTGAAGGTCTGCCTCAAGACTAGATACTCTCTTTACTGATTCTTC
1 TCCCTCTCAAGAATAACTGATTGAAGGTCAGCCTCAAGACTAGATACTCTCTTTACTGACTCTTC
* *
64887 TAAATCAGTAGCTAGTAACCCACAATAATTTTCAAGATTATCAATCTTCTTCTGCAAAGAATTTC
66 CAAATCAGAAGCTAGTAACCCACAATAATTTTCAAGATTATCAATCTTCTTCTGCAAAGAATTTC
64952 TTTCATGATTAGCATCTGAAAGAGCG
131 TTTCATGATTAGCATCTGAAAGAGCG
* *
64978 TCCCTCTCCAGAATAACTGATTGAAGGTCAGCCTCAAGACTAGATACTCTCTTTTCTGACTCTTC
1 TCCCTCTCAAGAATAACTGATTGAAGGTCAGCCTCAAGACTAGATACTCTCTTTACTGACTCTTC
* * *
65043 CAAATCAGAAGCTAGTGACCCACAATAATTTTCCAGATTATCAATCTTCTTCTGCAAAGAATTTT
66 CAAATCAGAAGCTAGTAACCCACAATAATTTTCAAGATTATCAATCTTCTTCTGCAAAGAATTTC
*
65108 TTTCATGATTAGCTTCTGAAAG
131 TTTCATGATTAGCATCTGAAAG
65130 TGCCCCTCCT
Statistics
Matches: 141, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
156 141 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.33
Consensus pattern (156 bp):
TCCCTCTCAAGAATAACTGATTGAAGGTCAGCCTCAAGACTAGATACTCTCTTTACTGACTCTTC
CAAATCAGAAGCTAGTAACCCACAATAATTTTCAAGATTATCAATCTTCTTCTGCAAAGAATTTC
TTTCATGATTAGCATCTGAAAGAGCG
Found at i:68723 original size:24 final size:24
Alignment explanation
Indices: 68694--68749 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
68684 ACAAAGGAAG
*
68694 TTCACCATCAACTTCAGACGTTCT
1 TTCACCACCAACTTCAGACGTTCT
*
68718 TTCACCACCAACTTCAGATGTTCT
1 TTCACCACCAACTTCAGACGTTCT
68742 TTCACCAC
1 TTCACCAC
68750 TTCTATCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.25, C:0.36, G:0.07, T:0.32
Consensus pattern (24 bp):
TTCACCACCAACTTCAGACGTTCT
Found at i:74154 original size:32 final size:32
Alignment explanation
Indices: 74108--74185 Score: 95
Period size: 32 Copynumber: 2.4 Consensus size: 32
74098 GTATTAAATG
* * * *
74108 ATTTCTTTCTTTTTGTTTGTGTACATTAA-CT
1 ATTTATTTCCTTTTGTTTATGTACACTAACCT
74139 AATTTATTTCCTTTTGTTTATGTACACTAACCT
1 -ATTTATTTCCTTTTGTTTATGTACACTAACCT
*
74172 ATTTATTTTCTTTT
1 ATTTATTTCCTTTT
74186 AATTGTGTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
32 38 0.95
33 2 0.05
ACGTcount: A:0.19, C:0.14, G:0.06, T:0.60
Consensus pattern (32 bp):
ATTTATTTCCTTTTGTTTATGTACACTAACCT
Found at i:76478 original size:21 final size:20
Alignment explanation
Indices: 76440--76479 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
76430 GATCAATATT
*
76440 TTTGCATATGCATTTGCATA
1 TTTGCATATGCATCTGCATA
*
76460 TTTGCATTTTGCATCTGCAT
1 TTTGCA-TATGCATCTGCAT
76480 TTCATTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (20 bp):
TTTGCATATGCATCTGCATA
Done.