genome.fa.s4433.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004433.1 Hibiscus syriacus cultivar Beakdansim tig00009719_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137031

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26--171	39	3.6	39	76	12	127	45	11	5	36	1.64
42--132	37	2.4	39	83	3	114	40	13	4	41	1.64
292--574	57	4.9	59	83	6	312	42	14	7	36	1.73
321--574	116	2.2	115	84	2	321	41	14	7	36	1.73
359--610	57	4.4	58	79	10	135	42	13	6	36	1.70
736--834	44	2.2	44	83	3	137	42	14	8	35	1.75
3357--3391	18	1.9	18	88	11	54	60	2	8	28	1.41
8159--8250	30	3.1	29	76	7	96	43	4	15	36	1.66
14280--14321	18	2.3	19	80	12	52	33	2	0	64	1.07
14470--14738	136	1.9	138	87	6	393	26	11	4	58	1.51
14470--14756	139	2.1	139	85	7	386	26	11	4	57	1.51
17577--17619	2	21.5	2	95	0	77	51	2	0	46	1.13
19217--19246	6	5.0	6	91	0	51	33	3	0	63	1.11
25224--25438	43	5.0	43	81	1	225	29	29	18	21	1.97
25786--26022	66	3.5	66	73	13	210	29	21	10	37	1.87
25838--25952	37	3.1	36	72	3	113	26	23	11	38	1.89
25854--25961	36	3.0	36	71	12	96	26	22	12	38	1.89
26213--26344	40	3.2	39	76	12	140	24	31	17	26	1.97
26061--26322	131	2.0	131	87	0	380	24	29	18	27	1.98
26213--26362	40	3.7	40	74	11	133	25	30	18	26	1.98
26210--26405	83	2.4	84	85	1	270	25	29	18	26	1.98
31335--31379	10	4.6	10	78	15	58	33	2	0	64	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31335--31379	21	2.3	21	88	11	69	33	2	0	64	1.06
31354--31399	23	1.9	25	86	8	69	30	4	2	63	1.26
31346--31420	34	2.2	34	83	4	89	32	2	2	62	1.23
35935--36150	114	1.9	114	86	0	297	27	18	24	30	1.98
41228--41276	22	2.2	22	77	0	53	18	4	8	69	1.30
41610--41676	34	1.9	34	82	14	84	20	13	19	46	1.83
53925--53985	2	30.5	2	100	0	122	0	50	0	49	1.00
60741--60777	15	2.4	16	82	13	51	18	24	27	29	1.98
60741--60780	7	5.4	7	85	8	53	17	27	27	27	1.98
63232--63336	24	4.4	24	76	11	81	20	17	16	46	1.84
63269--63338	12	5.8	12	76	6	61	17	14	18	50	1.79
63232--63336	48	2.2	48	81	6	115	20	17	16	46	1.84
63269--63340	24	3.0	24	87	0	108	18	13	18	50	1.79
63501--63555	2	27.5	2	100	0	110	49	0	0	50	1.00
64613--64839	35	6.2	36	74	16	152	43	4	8	43	1.56
64920--64960	5	8.2	5	88	0	55	19	7	0	73	1.07
64920--64960	20	2.0	20	95	0	73	19	7	0	73	1.07
69630--69673	20	2.1	22	87	8	65	29	2	0	68	1.02
72735--72760	5	5.2	5	100	0	52	0	19	57	23	1.40
78068--78112	19	2.4	19	80	0	54	60	2	24	13	1.45
81327--81351	2	12.5	2	100	0	50	52	0	0	48	1.00
82375--82660	43	6.4	43	72	12	156	30	15	19	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82565--82655	46	2.0	46	83	10	107	25	15	20	38	1.92
86024--86145	31	3.9	31	86	1	154	23	31	23	20	1.98
99418--99460	19	2.3	19	88	8	61	11	23	27	37	1.89
106708--106748	10	4.3	9	85	11	55	14	29	29	26	1.95
106708--106748	19	2.2	19	86	8	57	14	29	29	26	1.95
108424--108493	7	10.3	7	71	20	51	67	1	31	0	1.00
108425--108476	20	2.6	20	96	0	95	67	0	32	0	0.91
108424--108477	10	5.4	10	72	24	51	68	0	31	0	0.90
108409--108491	27	2.9	28	76	16	82	65	1	33	0	1.01
108818--108856	17	2.2	18	86	4	53	38	2	7	51	1.44
111002--111038	18	2.1	17	90	5	56	35	0	0	64	0.94
111248--111618	121	3.0	120	79	10	460	47	4	10	37	1.60
111749--111794	24	2.0	22	91	8	74	56	4	0	39	1.19
114243--114283	12	3.6	12	74	12	50	48	19	12	19	1.80
114243--114285	22	2.0	22	95	0	77	46	18	13	20	1.83
114285--114325	21	2.0	21	90	0	64	26	26	19	26	1.99
114348--114387	21	1.9	21	89	0	62	25	27	20	27	1.99
116916--116946	15	2.1	15	100	0	62	32	19	6	41	1.77
118746--118811	29	2.3	29	89	0	96	31	15	19	33	1.93
127791--127903	24	4.7	24	89	0	172	43	15	10	30	1.80
127825--127903	12	6.6	12	79	0	86	41	15	11	31	1.82
136645--136730	34	2.4	34	94	5	145	25	20	26	26	1.99

Tables:   1

The End!