genome.fa.s4434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004434.1 Hibiscus syriacus cultivar Beakdansim tig00009725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62171

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3591--3732	54	2.6	54	84	3	180	29	19	21	28	1.98
4034--4088	21	2.6	19	78	21	56	27	7	0	65	1.19
4045--4099	21	2.4	23	82	14	69	29	7	1	61	1.33
4276--4324	21	2.4	21	79	3	55	24	12	26	36	1.91
15599--15668	33	2.1	33	89	0	104	25	17	21	35	1.95
19239--19405	90	1.9	90	88	0	253	44	7	13	34	1.73
21873--21967	45	2.1	45	82	3	111	28	5	12	53	1.60
28389--28508	51	2.3	52	88	1	188	36	19	21	22	1.95
29610--30624	249	4.1	249	90	2	1559	31	17	17	34	1.93
30637--30817	47	3.8	47	88	1	272	29	19	19	30	1.97
30628--30817	95	2.0	93	88	2	281	30	20	18	30	1.96
40750--40790	20	2.0	22	85	9	59	36	2	4	56	1.34
43759--43837	20	4.0	20	81	6	79	24	11	15	49	1.77
43822--43909	45	2.0	45	83	0	113	25	9	14	51	1.72
43873--43928	20	2.8	20	91	0	85	17	8	19	53	1.70
45134--45309	85	2.1	85	84	2	228	30	21	18	29	1.97
46877--46908	2	16.0	2	100	0	64	50	0	0	50	1.00
50257--50334	29	2.7	29	74	7	79	41	2	12	43	1.56
52217--52305	43	2.1	43	89	0	133	28	20	16	34	1.94
52541--52582	19	2.2	19	95	0	75	38	23	16	21	1.93
54404--54448	24	1.9	24	95	4	83	60	15	17	6	1.56
54404--54455	24	2.2	23	89	3	77	61	15	17	5	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55635--55677	23	1.9	21	81	13	50	32	18	13	34	1.90
60128--60170	21	2.0	21	86	0	59	51	0	9	39	1.34

Tables:   1

The End!