genome.fa.s4435.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004435.1 Hibiscus syriacus cultivar Beakdansim tig00009727_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157011

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369--435	21	3.2	21	68	4	55	19	20	35	23	1.95
4293--4362	21	3.3	21	69	0	59	22	40	20	17	1.92
4238--4362	41	3.0	41	77	4	99	22	39	16	21	1.92
5708--5743	14	2.6	14	90	0	54	36	0	19	44	1.51
5995--6059	24	2.8	24	83	2	60	38	20	16	24	1.93
10747--10792	21	2.2	20	82	14	58	21	2	0	76	0.90
21337--21362	2	13.0	2	100	0	52	50	0	0	50	1.00
23888--23989	30	3.5	30	86	10	149	26	17	14	41	1.88
34934--35024	20	4.6	20	80	0	92	46	23	12	18	1.82
34934--35024	40	2.3	40	92	0	146	46	23	12	18	1.82
34952--35028	20	3.8	20	84	0	109	41	24	15	18	1.89
35140--35190	22	2.3	22	93	0	84	19	43	15	21	1.88
39178--39290	59	1.9	59	94	3	201	30	1	16	51	1.55
39369--39418	20	2.5	20	96	0	91	40	26	16	18	1.90
51335--51368	12	2.8	12	90	0	50	14	0	29	55	1.40
51962--52001	16	2.6	15	84	4	53	67	0	5	27	1.11
52157--52290	39	3.5	39	82	10	168	29	10	22	38	1.87
52157--52306	58	2.6	58	95	2	264	28	11	22	37	1.89
52156--52440	20	14.4	20	77	8	147	22	12	23	40	1.89
52273--52461	40	4.7	41	77	12	169	19	14	24	41	1.89
52298--52440	60	2.4	59	80	13	191	17	14	25	42	1.87
60074--60108	15	2.3	15	90	0	52	80	0	8	11	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61100--61146	22	2.2	21	88	11	69	78	4	0	17	0.90
62029--62075	18	2.7	17	90	3	67	34	8	29	27	1.87
62735--62762	5	5.6	5	100	0	56	21	57	21	0	1.41
62479--62983	266	1.9	263	83	6	660	40	20	11	27	1.87
64696--64743	18	2.7	18	75	12	53	56	12	2	29	1.48
78950--79017	35	1.9	35	90	0	109	44	25	0	30	1.54
79020--79094	35	2.1	35	82	4	98	38	1	17	42	1.58
86411--86474	32	2.0	32	82	11	78	34	9	9	46	1.68
86659--86843	22	8.8	22	80	7	197	17	22	30	29	1.97
86656--86843	44	4.5	42	85	10	260	18	22	29	29	1.97
86658--86824	66	2.6	62	83	5	217	17	22	29	29	1.97
92895--93038	22	6.7	22	87	3	188	18	23	29	28	1.97
95603--95650	3	16.3	3	85	12	64	29	4	0	66	1.10
95910--95966	2	30.0	2	75	10	57	45	0	1	52	1.11
103930--103956	11	2.5	11	100	0	54	25	0	0	74	0.83
104792--104875	43	2.0	43	95	0	150	44	5	14	35	1.69
113571--113610	12	3.5	11	87	12	55	77	0	2	20	0.88
113665--113976	37	8.4	37	78	9	298	42	7	3	47	1.46
113665--113976	111	2.8	111	81	7	346	42	7	3	47	1.46
113665--113974	73	4.2	74	80	9	319	42	7	3	47	1.47
113656--113974	36	8.7	36	75	16	255	42	7	3	47	1.47
119619--119665	24	2.0	25	87	8	71	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122334--122396	33	1.9	33	90	0	99	20	22	34	22	1.96
131034--131074	22	1.9	21	85	14	57	58	19	17	4	1.56
132116--132349	120	2.0	120	99	0	459	28	24	13	34	1.93
135889--135920	17	1.9	17	93	6	57	40	0	6	53	1.26
142802--142840	17	2.4	17	95	4	71	51	5	0	43	1.24
146979--147074	37	2.5	39	84	3	133	45	4	7	42	1.51
147056--147110	21	2.5	21	88	5	74	47	3	9	40	1.53
147015--147110	23	4.6	21	72	20	69	46	4	8	40	1.53
146980--147189	97	2.1	97	83	8	257	47	5	7	40	1.55
147077--147197	38	3.2	36	80	15	131	47	5	7	38	1.56
147076--147244	37	4.6	35	70	21	98	46	5	7	40	1.55
147222--147277	25	2.2	25	81	15	71	44	1	3	50	1.29
147260--147302	13	2.9	15	80	16	54	34	0	0	65	0.93
147265--147311	21	2.1	22	85	14	62	31	0	0	68	0.90
148676--148706	16	2.0	16	93	6	55	12	3	6	77	1.08

Tables:   1

The End!