genome.fa.s4437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004437.1 Hibiscus syriacus cultivar Beakdansim tig00009733_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93990

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591--644	27	2.0	26	82	3	63	27	7	3	61	1.40
5618--5658	20	2.0	22	85	9	59	36	2	4	56	1.34
5987--6024	18	2.2	18	90	4	60	15	2	5	76	1.08
8624--8702	20	4.0	20	81	6	79	24	11	15	49	1.77
8687--8774	45	2.0	45	83	0	113	25	9	14	51	1.72
8738--8793	20	2.8	20	91	0	85	17	8	19	53	1.70
10003--10178	85	2.1	85	84	2	228	30	21	18	29	1.97
11749--11786	2	19.0	2	100	0	76	50	0	0	50	1.00
15171--15248	29	2.7	29	74	7	79	41	2	12	43	1.56
17145--17233	43	2.1	43	89	0	133	28	20	16	34	1.94
17469--17510	19	2.2	19	95	0	75	38	23	16	21	1.93
19342--19386	24	1.9	24	95	4	83	60	15	17	6	1.56
19342--19393	24	2.2	23	89	3	77	61	15	17	5	1.52
20580--20622	23	1.9	21	81	13	50	32	18	13	34	1.90
28124--28155	15	2.1	15	100	0	64	40	6	31	21	1.78
29972--30018	24	2.0	24	95	0	85	25	6	40	27	1.80
35215--35249	13	2.7	13	90	0	52	40	0	0	60	0.97
48119--48448	56	5.9	55	87	1	417	33	15	23	27	1.95
48123--48448	111	2.9	111	88	0	472	33	15	23	27	1.94
48092--48448	167	2.1	167	84	1	466	33	15	23	27	1.94
51629--51733	52	2.0	52	100	0	210	22	13	20	42	1.87
52105--52150	20	2.4	20	82	17	62	28	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55834--55892	29	2.0	30	86	3	84	50	15	13	20	1.77
56061--56150	36	2.4	37	90	3	137	24	8	18	47	1.77
57919--57955	17	2.2	17	100	0	74	10	18	16	54	1.71
58666--58748	41	2.0	41	95	0	148	31	24	9	34	1.87
60015--60108	6	15.8	6	72	9	68	38	1	1	59	1.11
60027--60079	9	5.9	9	89	6	81	39	1	1	56	1.21
60019--60108	27	3.5	26	77	11	87	38	1	1	58	1.12
60860--60940	25	3.0	27	82	15	80	38	1	1	59	1.13
64925--64956	15	2.1	15	94	0	55	25	18	9	46	1.79
68736--68764	9	3.3	9	90	9	51	20	20	0	58	1.39
72279--72344	16	4.0	16	80	11	71	78	1	18	1	0.90
72280--72343	22	2.9	22	79	9	67	79	1	17	1	0.89
72278--72362	33	2.5	33	83	7	100	75	1	16	7	1.08
72278--72371	34	2.8	32	81	10	100	74	1	17	7	1.10
72717--72751	18	1.9	18	100	0	70	31	5	5	57	1.46
74040--74402	124	3.0	123	93	2	599	41	15	17	25	1.89
74352--74467	58	2.0	58	93	0	196	34	13	20	31	1.92
74736--74830	3	32.0	3	72	6	77	36	1	1	61	1.10
80603--80675	39	1.9	36	81	13	85	52	2	0	45	1.15
80668--80711	17	2.4	18	81	11	54	45	0	0	54	0.99
80837--80876	19	2.1	19	86	9	55	47	0	0	52	1.00
81162--81228	30	2.2	30	83	0	80	35	11	10	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81179--81242	30	2.1	30	85	0	83	34	10	10	43	1.75
82067--82104	2	19.0	2	100	0	76	50	0	0	50	1.00
85653--85808	73	2.2	69	80	10	172	46	3	5	44	1.43
86001--86027	2	13.5	2	100	0	54	48	0	0	51	1.00
86058--86106	20	2.3	22	79	13	66	36	8	4	51	1.51
87022--87050	15	1.9	15	100	0	58	27	13	10	48	1.75
89936--90147	105	2.0	104	95	2	381	43	15	13	27	1.84
92058--92101	21	2.1	21	91	0	70	29	0	15	54	1.42
92078--92140	28	2.2	29	94	5	110	28	0	12	58	1.35

Tables:   1

The End!