genome.fa.s4438.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004438.1 Hibiscus syriacus cultivar Beakdansim tig00009735_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125276

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3094--3181	3	29.7	3	97	2	169	65	0	0	34	0.93
3362--3836	117	4.0	120	82	5	518	27	17	18	36	1.94
3362--3836	239	2.0	239	83	7	599	27	17	18	36	1.94
3813--3959	42	3.5	42	80	8	122	30	12	23	33	1.92
3808--3999	44	4.5	42	80	9	185	29	15	22	32	1.94
3857--3991	42	3.2	42	84	3	155	29	14	22	33	1.94
5018--5059	21	2.0	22	85	4	59	28	23	2	45	1.66
5263--5332	23	3.0	23	79	8	79	35	22	24	17	1.95
7389--7569	37	4.9	37	78	2	168	46	14	14	24	1.82
8487--9171	54	12.9	53	77	8	585	42	18	9	29	1.81
8517--9143	206	3.0	207	82	9	696	42	18	9	29	1.81
10136--10185	24	2.1	24	100	0	100	12	30	8	50	1.68
10909--10957	25	1.9	26	83	4	64	24	14	32	28	1.94
16329--16370	11	4.1	11	76	17	54	16	0	19	64	1.30
16557--16586	3	10.0	3	100	0	60	66	0	0	33	0.92
19097--19137	20	2.0	20	100	0	82	41	0	14	43	1.45
21349--21389	2	20.5	2	89	0	64	51	0	0	48	1.00
27696--27726	15	2.1	14	94	5	53	61	0	38	0	0.96
30371--30734	139	2.7	136	86	4	475	25	21	17	35	1.95
31796--31833	20	1.9	20	94	0	67	31	28	18	21	1.97
31795--31840	20	2.3	20	84	0	65	30	26	19	23	1.98
31897--31926	15	1.9	16	93	6	53	36	6	20	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31911--32070	85	1.9	85	89	0	248	33	16	25	25	1.95
32047--32155	42	2.6	42	97	0	200	31	23	20	24	1.98
32084--32154	20	3.5	20	70	14	72	33	21	21	23	1.97
32060--32134	22	3.5	22	66	14	66	34	24	18	22	1.96
32716--32774	28	2.1	29	87	3	84	23	3	33	38	1.72
33395--33455	29	2.1	28	82	8	70	9	13	0	77	1.00
33419--33458	14	2.9	14	84	0	62	7	10	0	82	0.84
33413--33452	7	5.9	7	88	2	55	7	12	0	80	0.91
33412--33494	6	12.0	7	73	22	52	6	14	0	79	0.91
33416--33517	27	3.8	26	74	11	73	4	13	1	79	0.98
33416--33500	36	2.4	34	82	7	100	5	14	0	80	0.90
33412--33517	17	6.1	17	73	12	74	4	14	1	79	0.98
33411--33519	16	6.8	16	75	16	73	4	14	2	77	1.03
37365--37429	23	2.8	23	83	0	94	20	21	24	33	1.97
47127--47165	18	2.2	18	86	9	53	56	0	0	43	0.99
48628--48671	2	22.0	2	100	0	88	50	0	0	50	1.00
49815--49904	41	2.2	41	82	6	101	32	16	24	26	1.96
49952--50031	41	1.9	41	82	12	101	32	13	17	36	1.89
51707--51992	143	2.0	145	90	2	461	33	16	17	32	1.92
52722--52746	11	2.3	11	100	0	50	32	8	20	40	1.81
54116--54245	46	2.8	46	95	0	224	34	13	15	36	1.87
55207--55276	36	1.9	37	94	2	124	42	18	10	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58874--59101	43	5.3	43	83	1	262	25	18	24	31	1.97
58885--59120	129	1.8	129	82	7	302	25	16	24	33	1.96
59522--59569	21	2.3	22	85	10	73	2	29	18	50	1.59
60644--60694	19	2.6	19	84	3	57	41	33	5	19	1.76
60740--60926	20	9.4	20	78	8	184	41	22	15	20	1.90
60728--60873	59	2.5	59	81	1	184	40	25	15	19	1.90
60710--60926	79	2.7	80	83	7	287	41	23	16	19	1.90
60710--60917	40	5.2	40	78	10	205	40	23	16	19	1.91
61403--61443	20	2.1	20	90	4	66	9	19	24	46	1.80
61406--61456	20	2.5	20	77	0	57	17	15	17	49	1.81
63393--63438	4	11.5	4	80	0	56	26	2	4	67	1.21
63582--63700	42	2.8	42	84	0	148	21	35	20	22	1.96
63582--63680	21	4.7	21	76	5	101	23	33	19	24	1.97
65113--65149	14	2.6	14	91	0	65	32	0	18	48	1.49
65063--65213	80	2.0	77	88	7	227	33	0	16	49	1.51
65319--65357	20	2.0	20	89	0	60	15	20	25	38	1.92
65572--65657	39	2.2	38	95	2	154	17	13	20	47	1.82
65933--65969	18	2.1	18	89	0	56	51	10	5	32	1.60
66391--66455	20	3.2	20	86	0	85	41	21	18	18	1.90
66467--66505	20	2.0	20	89	0	60	20	20	20	38	1.94
66824--66865	18	2.3	18	87	0	57	14	2	23	59	1.47
68925--68949	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69140--69191	24	2.2	24	82	0	59	36	21	19	23	1.95
69876--69913	16	2.5	15	84	12	51	65	0	5	28	1.14
70070--70142	19	3.7	20	83	10	96	26	15	23	35	1.94
70070--70164	40	2.4	41	82	10	117	25	15	23	35	1.94
70070--70162	20	4.7	19	85	6	89	24	15	23	36	1.93
79313--79344	15	2.1	15	94	0	55	53	12	25	9	1.68
83822--84126	135	2.3	134	85	3	373	36	15	15	32	1.89
87353--88204	422	2.0	420	86	5	1195	27	17	13	41	1.87
90498--90536	18	2.2	18	100	0	78	38	25	15	20	1.92
94838--94951	60	1.9	60	83	3	149	28	14	16	39	1.89
98771--98833	2	31.5	2	96	0	117	50	1	47	0	1.10
101276--101325	9	5.0	11	81	18	65	52	0	0	48	1.00
101265--101325	20	3.0	20	81	13	72	49	0	0	50	1.00
103210--103298	24	3.8	24	86	4	101	48	2	7	41	1.45
103266--103404	36	3.9	36	81	6	160	39	3	11	45	1.58
103266--103404	72	1.9	70	87	7	199	39	3	11	45	1.58
103374--103415	22	1.9	22	90	0	66	45	4	4	45	1.45
103469--103504	18	1.9	18	88	5	54	22	5	0	72	1.05
104446--104496	21	2.6	19	81	9	66	45	15	19	19	1.86
105519--105562	23	1.9	23	90	0	70	29	27	27	15	1.96
107457--107491	18	2.0	18	88	5	54	20	2	0	77	0.90
115595--115672	31	2.5	31	89	0	111	35	11	26	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120908--120943	19	1.9	18	88	5	54	58	5	5	30	1.44
122757--122815	27	2.1	28	84	3	75	47	6	13	32	1.69

Tables:   1

The End!