genome.fa.s4439.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004439.1 Hibiscus syriacus cultivar Beakdansim tig00009739_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55881

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179--1225	25	1.9	25	86	4	69	48	17	6	27	1.71
8317--8430	20	5.7	20	81	6	104	32	24	18	24	1.97
8314--8430	61	1.9	61	83	0	153	34	23	17	23	1.96
8987--9026	19	2.1	19	90	0	62	55	25	15	5	1.60
9022--9186	19	9.1	19	74	17	136	12	21	22	43	1.86
9074--9160	33	2.6	33	90	1	129	12	22	25	39	1.90
9129--9186	20	2.9	20	80	10	64	13	24	18	43	1.87
11211--11277	21	3.2	21	66	6	55	23	35	20	19	1.95
11168--11277	42	2.6	42	80	7	107	24	33	20	21	1.97
12559--12594	14	2.6	14	95	0	63	30	0	25	44	1.54
12777--12903	33	3.9	32	84	8	175	15	22	18	43	1.88
12777--12902	66	1.9	66	95	0	225	15	22	19	42	1.88
15186--15210	12	2.1	12	100	0	50	0	28	0	72	0.86
16414--16471	20	2.9	20	94	0	98	37	22	22	17	1.93
16494--16547	14	3.5	14	77	22	63	11	20	20	48	1.80
16489--16566	33	2.4	33	91	0	120	12	23	21	42	1.87
16654--16690	14	2.6	14	86	0	56	48	21	0	29	1.50
18551--18617	19	3.5	19	83	4	89	37	23	23	14	1.93
18606--18663	14	3.9	14	79	16	71	48	25	17	8	1.75
18590--18668	32	2.4	33	95	2	142	46	24	18	10	1.80
18683--18770	32	2.7	33	94	3	160	11	19	22	46	1.81
18687--18770	14	5.1	17	70	24	72	10	19	22	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18755--18809	20	2.8	19	83	8	65	16	23	23	36	1.94
19289--19333	18	2.5	18	88	0	72	13	15	44	26	1.83
20653--20726	20	3.8	20	81	1	69	43	22	17	16	1.88
21181--21294	20	5.7	20	82	6	122	24	18	26	30	1.98
21161--21296	41	3.3	41	79	6	159	24	17	25	33	1.97
21161--21316	41	3.8	41	76	3	109	23	19	24	33	1.97
29980--30055	35	2.2	35	87	0	107	36	25	2	35	1.70
30454--30701	130	1.9	130	90	0	397	36	15	12	35	1.85
30468--30732	130	2.0	129	79	4	282	39	13	12	33	1.83
31043--31093	27	1.9	27	88	4	77	43	1	1	52	1.23
31172--31205	16	2.0	18	88	11	54	64	5	2	26	1.30
43487--43929	229	1.9	227	94	1	771	45	7	6	39	1.59
43995--44040	20	2.3	19	89	10	74	54	10	17	17	1.70
44152--44211	29	2.1	29	100	0	120	53	11	15	20	1.72
44191--44237	20	2.4	19	89	10	76	55	10	17	17	1.69
44195--44242	20	2.6	18	84	15	62	56	10	14	18	1.66
46470--46534	21	3.1	21	80	6	69	40	15	29	15	1.88
46568--46633	33	2.0	33	90	0	105	28	0	48	22	1.51
48425--48473	19	2.6	19	93	0	80	30	2	10	57	1.43
48592--50205	198	8.1	198	99	0	3176	36	16	16	30	1.91
51803--51877	3	25.0	3	79	0	78	34	5	34	25	1.79
53131--53310	87	2.1	86	91	5	290	43	13	12	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53486--53528	22	1.9	23	90	4	70	30	11	13	44	1.80

Tables:   1

The End!