genome.fa.s444.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000444.1 Hibiscus syriacus cultivar Beakdansim tig00000810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122641

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178--298	59	2.0	60	81	13	144	29	28	11	30	1.92
196--309	20	5.8	19	70	20	65	28	27	11	33	1.91
282--395	40	2.9	39	81	2	129	30	24	10	34	1.89
282--436	20	7.9	19	70	15	77	30	23	10	36	1.88
562--599	16	2.5	15	84	12	51	28	5	0	65	1.14
1340--1385	24	1.9	24	86	0	65	21	19	21	36	1.95
1339--1392	24	2.2	24	80	0	63	20	16	20	42	1.89
3600--3635	18	2.0	18	94	0	63	55	25	2	16	1.55
3970--4032	20	3.2	20	88	0	90	19	12	23	44	1.85
5497--5586	42	2.1	42	87	0	126	22	17	36	23	1.95
5514--5586	21	3.5	20	79	7	83	21	21	34	21	1.97
5522--5612	42	2.2	42	83	0	110	28	15	36	19	1.92
5886--5927	21	2.0	21	86	9	59	33	26	16	23	1.96
5962--6059	21	4.7	21	72	7	83	32	34	13	19	1.90
5960--6059	42	2.4	41	77	8	112	32	35	13	20	1.90
6781--6824	20	2.2	20	87	0	61	18	22	20	38	1.93
6849--6888	20	2.0	20	90	0	62	27	17	17	37	1.92
8358--8470	21	5.4	21	82	0	118	23	17	36	22	1.95
8358--8476	42	2.8	42	90	0	175	24	16	36	22	1.94
8890--8930	21	2.0	21	90	0	64	34	36	14	14	1.87
10471--10529	20	3.0	20	84	0	82	18	10	16	54	1.70
10874--10924	22	2.3	22	82	0	66	21	19	39	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11052--11099	20	2.5	19	90	10	71	20	12	22	43	1.86
11090--11142	20	2.6	21	84	3	72	26	15	20	37	1.92
30676--30715	21	1.9	21	89	0	62	25	40	25	10	1.86
34217--34249	15	2.2	15	89	10	50	33	0	0	66	0.92
34289--34326	19	2.0	19	100	0	76	57	0	26	15	1.38
34484--34533	18	2.7	18	81	3	55	46	14	2	38	1.56
34523--34605	29	2.8	29	85	7	105	42	7	0	50	1.30
34584--34625	20	2.1	20	86	8	59	47	4	0	47	1.23
34663--34797	27	5.0	26	75	11	101	60	2	1	35	1.21
34702--34810	31	3.7	30	77	15	102	59	3	1	34	1.26
34668--34821	57	2.7	58	82	9	167	59	2	1	36	1.23
34668--35067	30	13.6	29	75	9	222	54	1	5	37	1.35
34704--35067	57	6.2	58	71	9	166	54	1	6	37	1.37
35299--35329	9	3.4	9	95	0	53	35	0	0	64	0.94
35602--35639	20	1.9	20	89	10	60	18	13	7	60	1.56
39440--39516	37	2.1	36	83	9	93	46	1	3	48	1.28
39656--39692	20	1.9	19	89	10	58	18	21	10	48	1.78
39662--39699	20	1.9	20	88	0	58	21	23	10	44	1.83
39913--39937	12	2.1	12	100	0	50	52	0	0	48	1.00
44511--44583	30	2.4	30	88	0	110	31	23	19	26	1.98
49560--49632	30	2.4	30	93	0	119	31	24	19	24	1.98
49563--49659	30	3.2	30	88	1	113	34	24	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49605--49682	31	2.5	31	83	2	86	34	23	17	24	1.96
50994--51023	7	4.4	7	95	4	53	73	0	26	0	0.84
54783--54830	19	2.5	19	100	0	96	20	33	25	20	1.97
56036--56078	21	2.1	21	86	4	61	48	9	13	27	1.73
56078--56150	23	3.2	23	82	7	94	39	21	4	34	1.73
56168--56212	22	2.0	22	83	8	56	40	11	8	40	1.72
56296--56361	29	2.2	29	82	12	73	43	0	4	51	1.22
56505--56577	23	3.2	23	80	7	85	41	20	4	34	1.72
56482--56577	46	2.1	45	81	7	106	42	18	5	33	1.73
56723--56788	29	2.2	29	82	12	73	43	0	4	51	1.22
56934--56985	23	2.3	22	90	6	77	44	19	1	34	1.62
56944--57006	23	2.7	23	90	0	90	38	19	4	38	1.73
55728--57638	429	4.5	429	97	0	3618	38	12	7	41	1.71
57373--57435	23	2.7	23	92	0	99	38	20	4	36	1.74
57858--57943	39	2.2	39	93	0	145	18	13	18	48	1.80
58202--58238	18	2.1	18	89	0	56	51	10	5	32	1.60
58676--58738	23	2.7	23	92	0	99	38	20	4	36	1.74
61594--62267	183	3.7	183	96	1	1192	33	17	14	33	1.90
63764--63844	3	27.0	3	75	5	74	23	34	4	37	1.77
63780--63856	36	2.1	36	88	4	111	20	35	7	36	1.82
63768--63859	6	15.3	6	81	0	76	20	34	6	38	1.79
65321--66487	199	5.9	199	97	0	2166	31	16	15	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65321--66487	594	2.0	595	96	1	2180	31	16	15	36	1.90
66607--66655	19	2.6	19	93	0	80	57	10	2	30	1.43
68443--68508	33	2.0	33	87	0	96	22	46	0	30	1.52
68542--68606	21	3.1	21	79	0	76	16	30	13	38	1.88
70823--70869	20	2.4	19	79	10	58	19	17	8	55	1.67
71004--71050	20	2.3	20	89	10	78	17	17	10	55	1.69
70790--71254	181	2.6	183	88	2	668	26	16	13	42	1.86
71309--71797	230	2.1	229	95	1	863	40	6	7	45	1.60
75862--75894	17	1.9	17	88	11	50	24	3	0	72	0.98
76729--76794	31	2.2	31	88	2	98	25	24	21	28	1.99
77885--77941	23	2.5	23	88	2	80	49	5	7	38	1.53
77900--77945	23	2.0	23	100	0	92	43	4	8	43	1.55
77906--77955	23	2.2	23	85	0	64	40	6	8	46	1.58
78731--78774	23	2.0	23	86	4	63	56	2	13	27	1.49
78796--78905	30	3.7	30	72	11	91	56	9	13	20	1.64
80347--80482	3	46.0	3	91	5	224	66	1	0	32	1.01
80668--81002	135	2.5	132	84	6	419	23	19	31	25	1.98
81104--81178	31	2.4	30	81	16	82	40	17	14	28	1.89
83363--83564	40	5.1	40	97	0	377	24	16	26	32	1.96
84556--84626	26	2.6	26	77	6	79	46	11	15	26	1.79
84842--84940	36	2.8	36	88	0	135	39	10	22	28	1.86
85019--85098	37	2.2	37	81	4	90	42	12	17	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85254--85322	33	2.1	33	94	0	120	30	21	14	33	1.93
86351--86433	14	5.8	14	78	17	66	1	13	7	78	1.01
86359--86517	31	5.4	28	75	18	119	1	14	7	76	1.06
86362--86517	15	10.3	14	76	13	125	1	14	7	76	1.05
86411--86497	34	2.6	34	82	8	92	1	13	8	77	1.05
86395--86517	47	2.7	47	85	9	148	0	14	8	76	1.05
86435--86517	23	3.4	25	77	14	93	1	15	7	75	1.07
90103--90195	30	3.1	29	70	18	75	59	10	10	19	1.60
90095--90210	29	3.9	29	72	11	83	56	12	12	18	1.65
91614--91683	3	24.0	3	80	11	83	64	1	0	34	1.03
91616--91682	22	3.0	23	75	18	79	64	1	0	34	1.03
92229--92267	17	2.4	16	82	4	51	20	0	2	76	0.90
92257--92301	3	15.0	3	90	0	72	35	0	2	62	1.08
99135--99174	13	3.0	13	88	3	62	87	0	12	0	0.54
99135--99180	23	2.0	23	91	8	76	86	0	13	0	0.56
99131--99178	14	3.5	14	86	13	73	85	0	14	0	0.60
99131--99186	7	8.1	7	79	15	55	83	0	16	0	0.64
103645--103795	54	2.9	54	85	4	202	37	15	22	24	1.93
104150--104209	22	2.7	22	86	0	84	35	16	13	35	1.88
104865--106447	76	20.8	76	95	1	2841	22	20	21	34	1.96
104865--106447	153	10.4	152	95	0	2841	22	20	21	34	1.96
106630--106680	3	17.0	3	87	0	75	35	1	1	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109122--109166	20	2.2	21	96	4	83	33	11	22	33	1.89
114706--114749	23	1.9	23	90	0	70	27	22	22	27	1.99
121638--121690	23	2.3	23	96	0	97	30	28	20	20	1.98

Tables:   1

The End!